Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21825 and DDA3937_RS22990 are separated by 11 nucleotides DDA3937_RS22990 and DDA3937_RS02640 are separated by 473 nucleotides
DDA3937_RS21825: DDA3937_RS21825 - type II toxin-antitoxin system toxin CcdB, at 584,740 to 585,034
_RS21825
DDA3937_RS22990: DDA3937_RS22990 - type II toxin-antitoxin system CcdA family antitoxin, at 585,046 to 585,147
_RS22990
DDA3937_RS02640: DDA3937_RS02640 - hypothetical protein, at 585,621 to 586,112
_RS02640
Position (kb) 585
586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 584.764 kb on - strand at 584.767 kb on - strand at 585.090 kb on + strand, within DDA3937_RS22990 at 585.150 kb on - strand at 585.230 kb on - strand at 585.249 kb on - strand at 585.264 kb on + strand at 585.265 kb on - strand at 585.299 kb on + strand at 585.432 kb on + strand at 585.545 kb on + strand at 585.546 kb on - strand at 585.569 kb on - strand at 585.599 kb on + strand at 585.600 kb on - strand at 585.600 kb on - strand at 585.604 kb on - strand at 585.620 kb on - strand at 585.620 kb on - strand at 585.677 kb on - strand, within DDA3937_RS02640 at 585.705 kb on - strand, within DDA3937_RS02640 at 585.761 kb on + strand, within DDA3937_RS02640 at 585.762 kb on - strand, within DDA3937_RS02640 at 585.782 kb on + strand, within DDA3937_RS02640 at 585.783 kb on - strand, within DDA3937_RS02640 at 585.806 kb on + strand, within DDA3937_RS02640 at 585.806 kb on + strand, within DDA3937_RS02640 at 585.807 kb on - strand, within DDA3937_RS02640 at 585.807 kb on - strand, within DDA3937_RS02640 at 585.807 kb on - strand, within DDA3937_RS02640 at 585.852 kb on - strand, within DDA3937_RS02640 at 585.982 kb on + strand, within DDA3937_RS02640 at 585.983 kb on - strand, within DDA3937_RS02640 at 586.101 kb on - strand at 586.115 kb on + strand at 586.129 kb on + strand at 586.130 kb on - strand at 586.131 kb on + strand at 586.132 kb on - strand at 586.132 kb on - strand at 586.132 kb on - strand at 586.135 kb on + strand at 586.135 kb on + strand at 586.135 kb on + strand at 586.139 kb on - strand at 586.223 kb on + strand at 586.239 kb on + strand at 586.251 kb on + strand at 586.392 kb on - strand at 586.394 kb on + strand at 586.395 kb on - strand at 586.480 kb on + strand at 586.564 kb on + strand at 586.593 kb on + strand at 586.598 kb on + strand at 586.598 kb on + strand at 586.629 kb on + strand at 586.687 kb on + strand at 586.688 kb on - strand at 586.692 kb on - strand at 586.692 kb on - strand at 586.692 kb on - strand at 586.693 kb on + strand at 586.693 kb on + strand at 586.694 kb on - strand at 586.752 kb on + strand at 586.752 kb on + strand at 586.786 kb on + strand at 586.786 kb on + strand at 586.786 kb on + strand at 586.786 kb on + strand at 586.787 kb on - strand at 586.787 kb on - strand at 586.787 kb on - strand at 586.834 kb on + strand at 586.835 kb on - strand at 586.835 kb on - strand at 586.835 kb on - strand at 586.835 kb on - strand at 586.933 kb on + strand at 586.933 kb on + strand at 586.933 kb on + strand at 586.934 kb on - strand at 586.934 kb on - strand at 586.934 kb on - strand at 586.992 kb on + strand at 586.996 kb on + strand at 586.997 kb on - strand at 587.031 kb on - strand at 587.031 kb on - strand at 587.033 kb on + strand at 587.033 kb on + strand at 587.045 kb on + strand at 587.067 kb on + strand at 587.067 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 584,764 - -0.3 584,767 - -1.9 585,090 + DDA3937_RS22990 0.43 -1.5 585,150 - -0.3 585,230 - -1.4 585,249 - -1.7 585,264 + -1.2 585,265 - -1.4 585,299 + -1.0 585,432 + -0.1 585,545 + -0.7 585,546 - -1.0 585,569 - -0.0 585,599 + +2.1 585,600 - -0.8 585,600 - +0.4 585,604 - +0.6 585,620 - -2.0 585,620 - -0.7 585,677 - DDA3937_RS02640 0.11 -0.4 585,705 - DDA3937_RS02640 0.17 -0.5 585,761 + DDA3937_RS02640 0.28 -0.7 585,762 - DDA3937_RS02640 0.29 -2.0 585,782 + DDA3937_RS02640 0.33 +1.5 585,783 - DDA3937_RS02640 0.33 -1.2 585,806 + DDA3937_RS02640 0.38 -1.1 585,806 + DDA3937_RS02640 0.38 -0.8 585,807 - DDA3937_RS02640 0.38 +1.0 585,807 - DDA3937_RS02640 0.38 -0.9 585,807 - DDA3937_RS02640 0.38 +0.8 585,852 - DDA3937_RS02640 0.47 -0.8 585,982 + DDA3937_RS02640 0.73 +0.2 585,983 - DDA3937_RS02640 0.74 -0.2 586,101 - +1.0 586,115 + -0.3 586,129 + +0.2 586,130 - -0.1 586,131 + -2.1 586,132 - +0.8 586,132 - -0.6 586,132 - -0.5 586,135 + +0.3 586,135 + +0.8 586,135 + +0.2 586,139 - -0.2 586,223 + +0.1 586,239 + -2.0 586,251 + +0.2 586,392 - -0.6 586,394 + +0.1 586,395 - -0.8 586,480 + -1.2 586,564 + -0.2 586,593 + -1.2 586,598 + -1.0 586,598 + +0.9 586,629 + -1.0 586,687 + -1.2 586,688 - +1.0 586,692 - +0.2 586,692 - +0.7 586,692 - +1.4 586,693 + +1.9 586,693 + +1.1 586,694 - -0.1 586,752 + -0.3 586,752 + -1.7 586,786 + -1.1 586,786 + -1.7 586,786 + -3.4 586,786 + -1.2 586,787 - +0.4 586,787 - +0.2 586,787 - +1.3 586,834 + -1.8 586,835 - +1.2 586,835 - -0.2 586,835 - -0.6 586,835 - +0.7 586,933 + -1.7 586,933 + +0.5 586,933 + +0.6 586,934 - -0.4 586,934 - -1.2 586,934 - -1.3 586,992 + -2.7 586,996 + +0.3 586,997 - +1.2 587,031 - -1.5 587,031 - +0.5 587,033 + +0.4 587,033 + -0.3 587,045 + -0.9 587,067 + -0.1 587,067 + -0.8
Or see this region's nucleotide sequence