Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02425 and DDA3937_RS02430 are separated by 129 nucleotides DDA3937_RS02430 and DDA3937_RS02435 are separated by 14 nucleotides DDA3937_RS02435 and DDA3937_RS02440 are separated by 150 nucleotides
DDA3937_RS02425: DDA3937_RS02425 - phosphoserine phosphatase, at 537,113 to 538,090
_RS02425
DDA3937_RS02430: DDA3937_RS02430 - YtjB family periplasmic protein, at 538,220 to 538,900
_RS02430
DDA3937_RS02435: DDA3937_RS02435 - trans-aconitate 2-methyltransferase, at 538,915 to 539,691
_RS02435
DDA3937_RS02440: DDA3937_RS02440 - hypothetical protein, at 539,842 to 540,714
_RS02440
Position (kb) 538
539
540 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 537.939 kb on + strand, within DDA3937_RS02425 at 537.940 kb on - strand, within DDA3937_RS02425 at 537.940 kb on - strand, within DDA3937_RS02425 at 537.960 kb on + strand, within DDA3937_RS02425 at 537.961 kb on - strand, within DDA3937_RS02425 at 538.003 kb on + strand at 538.004 kb on - strand at 538.070 kb on - strand at 538.070 kb on - strand at 538.071 kb on + strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.072 kb on - strand at 538.095 kb on + strand at 538.096 kb on - strand at 538.096 kb on - strand at 538.099 kb on + strand at 538.099 kb on + strand at 538.099 kb on + strand at 538.099 kb on + strand at 538.099 kb on + strand at 538.100 kb on - strand at 538.100 kb on - strand at 538.100 kb on - strand at 538.162 kb on + strand at 538.162 kb on + strand at 538.162 kb on + strand at 538.163 kb on - strand at 538.163 kb on - strand at 538.163 kb on - strand at 538.163 kb on - strand at 538.168 kb on - strand at 538.197 kb on - strand at 538.213 kb on + strand at 538.213 kb on + strand at 538.214 kb on - strand at 538.214 kb on - strand at 538.214 kb on - strand at 538.214 kb on - strand at 538.248 kb on + strand at 538.248 kb on + strand at 538.248 kb on + strand at 538.248 kb on + strand at 538.249 kb on - strand at 538.249 kb on - strand at 538.249 kb on - strand at 538.255 kb on + strand at 538.256 kb on - strand at 538.313 kb on + strand, within DDA3937_RS02430 at 538.313 kb on + strand, within DDA3937_RS02430 at 538.314 kb on - strand, within DDA3937_RS02430 at 538.369 kb on + strand, within DDA3937_RS02430 at 538.370 kb on - strand, within DDA3937_RS02430 at 538.472 kb on - strand, within DDA3937_RS02430 at 538.477 kb on + strand, within DDA3937_RS02430 at 538.477 kb on + strand, within DDA3937_RS02430 at 538.478 kb on - strand, within DDA3937_RS02430 at 538.494 kb on + strand, within DDA3937_RS02430 at 538.495 kb on - strand, within DDA3937_RS02430 at 538.495 kb on - strand, within DDA3937_RS02430 at 538.495 kb on - strand, within DDA3937_RS02430 at 538.496 kb on + strand, within DDA3937_RS02430 at 538.496 kb on + strand, within DDA3937_RS02430 at 538.496 kb on + strand, within DDA3937_RS02430 at 538.497 kb on - strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand, within DDA3937_RS02430 at 538.586 kb on + strand at 538.587 kb on - strand, within DDA3937_RS02430 at 538.621 kb on + strand, within DDA3937_RS02430 at 538.651 kb on + strand, within DDA3937_RS02430 at 538.651 kb on + strand, within DDA3937_RS02430 at 538.652 kb on - strand, within DDA3937_RS02430 at 538.652 kb on - strand, within DDA3937_RS02430 at 538.652 kb on - strand, within DDA3937_RS02430 at 538.750 kb on + strand, within DDA3937_RS02430 at 538.751 kb on - strand, within DDA3937_RS02430 at 538.805 kb on + strand, within DDA3937_RS02430 at 538.805 kb on + strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 538.806 kb on - strand, within DDA3937_RS02430 at 539.013 kb on - strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.124 kb on - strand, within DDA3937_RS02435 at 539.124 kb on - strand, within DDA3937_RS02435 at 539.124 kb on - strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.142 kb on + strand, within DDA3937_RS02435 at 539.177 kb on + strand, within DDA3937_RS02435 at 539.177 kb on + strand, within DDA3937_RS02435 at 539.177 kb on + strand, within DDA3937_RS02435 at 539.178 kb on - strand, within DDA3937_RS02435 at 539.178 kb on - strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.181 kb on - strand, within DDA3937_RS02435 at 539.181 kb on - strand, within DDA3937_RS02435 at 539.349 kb on + strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.399 kb on + strand, within DDA3937_RS02435 at 539.399 kb on + strand, within DDA3937_RS02435 at 539.400 kb on - strand, within DDA3937_RS02435 at 539.613 kb on + strand, within DDA3937_RS02435 at 539.644 kb on - strand at 539.666 kb on + strand at 539.666 kb on + strand at 539.691 kb on + strand at 539.691 kb on + strand at 539.691 kb on + strand at 539.692 kb on - strand at 539.712 kb on - strand at 539.732 kb on + strand at 539.741 kb on + strand at 539.741 kb on + strand at 539.741 kb on + strand at 539.742 kb on - strand at 539.936 kb on + strand, within DDA3937_RS02440 at 539.936 kb on + strand, within DDA3937_RS02440 at 539.937 kb on - strand, within DDA3937_RS02440 at 539.949 kb on + strand, within DDA3937_RS02440 at 539.949 kb on + strand, within DDA3937_RS02440 at 539.950 kb on - strand, within DDA3937_RS02440 at 540.035 kb on + strand, within DDA3937_RS02440 at 540.035 kb on + strand at 540.043 kb on + strand, within DDA3937_RS02440 at 540.083 kb on - strand, within DDA3937_RS02440 at 540.161 kb on + strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.270 kb on + strand, within DDA3937_RS02440 at 540.271 kb on - strand, within DDA3937_RS02440 at 540.296 kb on + strand, within DDA3937_RS02440 at 540.297 kb on - strand, within DDA3937_RS02440 at 540.364 kb on - strand, within DDA3937_RS02440 at 540.589 kb on + strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.684 kb on + strand at 540.684 kb on + strand at 540.684 kb on + strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 537,939 + DDA3937_RS02425 0.84 -2.2 537,940 - DDA3937_RS02425 0.85 -1.2 537,940 - DDA3937_RS02425 0.85 -1.2 537,960 + DDA3937_RS02425 0.87 -0.8 537,961 - DDA3937_RS02425 0.87 -2.8 538,003 + -1.9 538,004 - -3.9 538,070 - -1.3 538,070 - -3.2 538,071 + +0.2 538,072 - -0.6 538,072 - -2.1 538,072 - +0.2 538,072 - +0.2 538,072 - -3.7 538,072 - -1.4 538,095 + -1.8 538,096 - -2.0 538,096 - -0.8 538,099 + -1.0 538,099 + -1.5 538,099 + -0.8 538,099 + -1.2 538,099 + -1.6 538,100 - -2.8 538,100 - -1.6 538,100 - -0.5 538,162 + -2.4 538,162 + -2.2 538,162 + +0.0 538,163 - +1.4 538,163 - -0.2 538,163 - -1.5 538,163 - +0.7 538,168 - +1.1 538,197 - -1.4 538,213 + +1.0 538,213 + -1.2 538,214 - +0.6 538,214 - +2.0 538,214 - -1.6 538,214 - +2.3 538,248 + -0.6 538,248 + -2.1 538,248 + -0.6 538,248 + -0.2 538,249 - +1.1 538,249 - -0.3 538,249 - -0.2 538,255 + -1.3 538,256 - +0.2 538,313 + DDA3937_RS02430 0.14 +0.4 538,313 + DDA3937_RS02430 0.14 -1.0 538,314 - DDA3937_RS02430 0.14 +4.8 538,369 + DDA3937_RS02430 0.22 -0.4 538,370 - DDA3937_RS02430 0.22 +0.0 538,472 - DDA3937_RS02430 0.37 +2.1 538,477 + DDA3937_RS02430 0.38 -0.8 538,477 + DDA3937_RS02430 0.38 -3.0 538,478 - DDA3937_RS02430 0.38 -0.1 538,494 + DDA3937_RS02430 0.40 +0.4 538,495 - DDA3937_RS02430 0.40 +0.6 538,495 - DDA3937_RS02430 0.40 -0.2 538,495 - DDA3937_RS02430 0.40 +0.1 538,496 + DDA3937_RS02430 0.41 +3.9 538,496 + DDA3937_RS02430 0.41 +1.8 538,496 + DDA3937_RS02430 0.41 -1.8 538,497 - DDA3937_RS02430 0.41 -1.0 538,586 + DDA3937_RS02430 0.54 -1.1 538,586 + DDA3937_RS02430 0.54 -1.8 538,586 + DDA3937_RS02430 0.54 -0.3 538,586 + DDA3937_RS02430 0.54 -0.2 538,586 + DDA3937_RS02430 0.54 -1.7 538,586 + +1.2 538,587 - DDA3937_RS02430 0.54 -1.4 538,621 + DDA3937_RS02430 0.59 -1.0 538,651 + DDA3937_RS02430 0.63 +0.1 538,651 + DDA3937_RS02430 0.63 -0.5 538,652 - DDA3937_RS02430 0.63 +1.6 538,652 - DDA3937_RS02430 0.63 +0.8 538,652 - DDA3937_RS02430 0.63 +0.8 538,750 + DDA3937_RS02430 0.78 -0.1 538,751 - DDA3937_RS02430 0.78 -0.3 538,805 + DDA3937_RS02430 0.86 -1.1 538,805 + DDA3937_RS02430 0.86 -0.2 538,806 - DDA3937_RS02430 0.86 +0.9 538,806 - DDA3937_RS02430 0.86 -1.9 538,806 - DDA3937_RS02430 0.86 +2.0 538,806 - DDA3937_RS02430 0.86 +0.4 538,806 - DDA3937_RS02430 0.86 -1.0 539,013 - DDA3937_RS02435 0.13 -1.6 539,123 + DDA3937_RS02435 0.27 -1.5 539,123 + DDA3937_RS02435 0.27 -0.7 539,123 + DDA3937_RS02435 0.27 -0.2 539,123 + DDA3937_RS02435 0.27 -1.4 539,124 - DDA3937_RS02435 0.27 -0.2 539,124 - DDA3937_RS02435 0.27 +0.3 539,124 - DDA3937_RS02435 0.27 -1.8 539,126 + DDA3937_RS02435 0.27 -0.4 539,126 + DDA3937_RS02435 0.27 +1.6 539,126 + DDA3937_RS02435 0.27 -0.2 539,126 + DDA3937_RS02435 0.27 -0.4 539,126 + DDA3937_RS02435 0.27 -0.8 539,126 + DDA3937_RS02435 0.27 -0.2 539,126 + DDA3937_RS02435 0.27 +0.8 539,126 + DDA3937_RS02435 0.27 -0.1 539,126 + DDA3937_RS02435 0.27 -2.0 539,127 - DDA3937_RS02435 0.27 +2.6 539,127 - DDA3937_RS02435 0.27 +0.9 539,127 - DDA3937_RS02435 0.27 -0.5 539,127 - DDA3937_RS02435 0.27 -1.0 539,127 - DDA3937_RS02435 0.27 -0.2 539,127 - DDA3937_RS02435 0.27 -0.7 539,127 - DDA3937_RS02435 0.27 +0.7 539,142 + DDA3937_RS02435 0.29 -1.0 539,177 + DDA3937_RS02435 0.34 -2.2 539,177 + DDA3937_RS02435 0.34 +0.4 539,177 + DDA3937_RS02435 0.34 +1.1 539,178 - DDA3937_RS02435 0.34 +0.2 539,178 - DDA3937_RS02435 0.34 -1.4 539,180 + DDA3937_RS02435 0.34 -1.0 539,180 + DDA3937_RS02435 0.34 -1.5 539,180 + DDA3937_RS02435 0.34 -0.5 539,180 + DDA3937_RS02435 0.34 -2.2 539,180 + DDA3937_RS02435 0.34 -1.0 539,180 + DDA3937_RS02435 0.34 -0.4 539,181 - DDA3937_RS02435 0.34 -0.2 539,181 - DDA3937_RS02435 0.34 +0.8 539,349 + DDA3937_RS02435 0.56 -0.2 539,350 - DDA3937_RS02435 0.56 +0.0 539,350 - DDA3937_RS02435 0.56 -1.6 539,350 - DDA3937_RS02435 0.56 -0.9 539,350 - DDA3937_RS02435 0.56 -1.4 539,399 + DDA3937_RS02435 0.62 +0.4 539,399 + DDA3937_RS02435 0.62 +0.2 539,400 - DDA3937_RS02435 0.62 -0.8 539,613 + DDA3937_RS02435 0.90 -1.2 539,644 - +0.2 539,666 + -0.7 539,666 + -1.6 539,691 + +0.6 539,691 + -1.4 539,691 + -1.0 539,692 - -3.1 539,712 - +1.2 539,732 + -1.2 539,741 + +0.3 539,741 + +0.0 539,741 + +0.1 539,742 - -2.8 539,936 + DDA3937_RS02440 0.11 -0.4 539,936 + DDA3937_RS02440 0.11 -1.2 539,937 - DDA3937_RS02440 0.11 -1.5 539,949 + DDA3937_RS02440 0.12 -1.1 539,949 + DDA3937_RS02440 0.12 -1.1 539,950 - DDA3937_RS02440 0.12 -0.2 540,035 + DDA3937_RS02440 0.22 -1.8 540,035 + -0.8 540,043 + DDA3937_RS02440 0.23 -0.4 540,083 - DDA3937_RS02440 0.28 -0.4 540,161 + DDA3937_RS02440 0.37 -2.5 540,162 - DDA3937_RS02440 0.37 +0.5 540,162 - DDA3937_RS02440 0.37 +0.1 540,162 - DDA3937_RS02440 0.37 +1.2 540,194 + DDA3937_RS02440 0.40 -1.3 540,194 + DDA3937_RS02440 0.40 +1.8 540,195 - DDA3937_RS02440 0.40 -1.1 540,195 - DDA3937_RS02440 0.40 +0.4 540,209 + DDA3937_RS02440 0.42 -0.2 540,209 + DDA3937_RS02440 0.42 -0.3 540,209 + DDA3937_RS02440 0.42 -1.0 540,209 + DDA3937_RS02440 0.42 -1.3 540,209 + DDA3937_RS02440 0.42 -1.5 540,209 + DDA3937_RS02440 0.42 -0.6 540,209 + DDA3937_RS02440 0.42 -0.8 540,210 - DDA3937_RS02440 0.42 -0.9 540,210 - DDA3937_RS02440 0.42 +1.2 540,210 - DDA3937_RS02440 0.42 -0.5 540,210 - DDA3937_RS02440 0.42 -0.4 540,210 - DDA3937_RS02440 0.42 +0.6 540,210 - DDA3937_RS02440 0.42 +0.7 540,210 - DDA3937_RS02440 0.42 +2.6 540,210 - DDA3937_RS02440 0.42 +1.9 540,210 - DDA3937_RS02440 0.42 +0.5 540,270 + DDA3937_RS02440 0.49 -0.3 540,271 - DDA3937_RS02440 0.49 +2.7 540,296 + DDA3937_RS02440 0.52 +0.3 540,297 - DDA3937_RS02440 0.52 -2.3 540,364 - DDA3937_RS02440 0.60 +0.3 540,589 + DDA3937_RS02440 0.86 +1.2 540,590 - DDA3937_RS02440 0.86 -0.6 540,590 - DDA3937_RS02440 0.86 -0.7 540,590 - DDA3937_RS02440 0.86 +0.2 540,684 + -0.3 540,684 + +0.8 540,684 + -0.5 540,685 - -1.2 540,685 - +0.8 540,685 - -0.2 540,685 - +0.1
Or see this region's nucleotide sequence