Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00930

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00925 and DDA3937_RS00930 are separated by 51 nucleotidesDDA3937_RS00930 and DDA3937_RS00935 are separated by 435 nucleotides DDA3937_RS00925: DDA3937_RS00925 - cell division protein FtsN, at 211,902 to 212,831 _RS00925 DDA3937_RS00930: DDA3937_RS00930 - DNA-binding transcriptional regulator CytR, at 212,883 to 213,953 _RS00930 DDA3937_RS00935: DDA3937_RS00935 - primosomal protein N', at 214,389 to 216,587 _RS00935 Position (kb) 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 211.991 kb on - strandat 212.226 kb on + strand, within DDA3937_RS00925at 212.273 kb on + strand, within DDA3937_RS00925at 212.274 kb on - strand, within DDA3937_RS00925at 212.274 kb on - strand, within DDA3937_RS00925at 212.333 kb on + strand, within DDA3937_RS00925at 212.387 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.416 kb on + strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.417 kb on - strand, within DDA3937_RS00925at 212.496 kb on - strand, within DDA3937_RS00925at 212.496 kb on - strand, within DDA3937_RS00925at 212.816 kb on - strandat 212.816 kb on - strandat 212.816 kb on - strandat 212.816 kb on - strandat 212.858 kb on + strandat 212.858 kb on + strandat 212.859 kb on - strandat 212.885 kb on - strandat 212.957 kb on + strandat 212.957 kb on + strandat 213.027 kb on + strand, within DDA3937_RS00930at 213.027 kb on + strand, within DDA3937_RS00930at 213.027 kb on + strand, within DDA3937_RS00930at 213.027 kb on + strand, within DDA3937_RS00930at 213.028 kb on - strand, within DDA3937_RS00930at 213.028 kb on - strand, within DDA3937_RS00930at 213.028 kb on - strandat 213.028 kb on - strand, within DDA3937_RS00930at 213.028 kb on - strand, within DDA3937_RS00930at 213.052 kb on + strand, within DDA3937_RS00930at 213.269 kb on - strand, within DDA3937_RS00930at 213.292 kb on + strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.293 kb on - strand, within DDA3937_RS00930at 213.335 kb on + strand, within DDA3937_RS00930at 213.335 kb on + strand, within DDA3937_RS00930at 213.335 kb on + strand, within DDA3937_RS00930at 213.336 kb on - strand, within DDA3937_RS00930at 213.336 kb on - strand, within DDA3937_RS00930at 213.337 kb on + strand, within DDA3937_RS00930at 213.337 kb on + strand, within DDA3937_RS00930at 213.337 kb on + strand, within DDA3937_RS00930at 213.337 kb on + strand, within DDA3937_RS00930at 213.338 kb on - strand, within DDA3937_RS00930at 213.338 kb on - strand, within DDA3937_RS00930at 213.338 kb on - strand, within DDA3937_RS00930at 213.421 kb on + strand, within DDA3937_RS00930at 213.422 kb on - strand, within DDA3937_RS00930at 213.422 kb on - strand, within DDA3937_RS00930at 213.454 kb on + strand, within DDA3937_RS00930at 213.473 kb on + strand, within DDA3937_RS00930at 213.725 kb on + strand, within DDA3937_RS00930at 213.796 kb on + strand, within DDA3937_RS00930at 213.796 kb on + strand, within DDA3937_RS00930at 213.796 kb on + strand, within DDA3937_RS00930at 213.797 kb on - strand, within DDA3937_RS00930at 213.990 kb on + strandat 213.990 kb on + strandat 214.026 kb on + strandat 214.027 kb on - strandat 214.027 kb on - strandat 214.044 kb on - strandat 214.044 kb on - strandat 214.095 kb on + strandat 214.095 kb on + strandat 214.095 kb on + strandat 214.096 kb on - strandat 214.096 kb on - strandat 214.096 kb on - strandat 214.096 kb on - strandat 214.096 kb on - strandat 214.100 kb on + strandat 214.101 kb on - strandat 214.101 kb on - strandat 214.161 kb on + strandat 214.162 kb on - strandat 214.171 kb on + strandat 214.171 kb on + strandat 214.171 kb on + strandat 214.171 kb on + strandat 214.171 kb on + strandat 214.171 kb on + strandat 214.171 kb on + strandat 214.171 kb on + strandat 214.172 kb on - strandat 214.172 kb on - strandat 214.172 kb on - strandat 214.172 kb on - strandat 214.172 kb on - strandat 214.173 kb on + strandat 214.173 kb on + strandat 214.173 kb on + strandat 214.173 kb on + strandat 214.174 kb on - strandat 214.240 kb on + strandat 214.240 kb on + strandat 214.240 kb on + strandat 214.241 kb on - strandat 214.278 kb on + strandat 214.278 kb on + strandat 214.278 kb on + strandat 214.279 kb on - strandat 214.290 kb on - strandat 214.314 kb on + strandat 214.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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211,991 - +0.3
212,226 + DDA3937_RS00925 0.35 +0.2
212,273 + DDA3937_RS00925 0.40 +0.6
212,274 - DDA3937_RS00925 0.40 -1.0
212,274 - DDA3937_RS00925 0.40 -0.9
212,333 + DDA3937_RS00925 0.46 -3.2
212,387 + DDA3937_RS00925 0.52 -1.7
212,416 + DDA3937_RS00925 0.55 -2.8
212,416 + DDA3937_RS00925 0.55 -1.2
212,416 + DDA3937_RS00925 0.55 -0.3
212,416 + DDA3937_RS00925 0.55 -0.4
212,417 - DDA3937_RS00925 0.55 +0.2
212,417 - DDA3937_RS00925 0.55 -0.4
212,417 - DDA3937_RS00925 0.55 -1.3
212,417 - DDA3937_RS00925 0.55 -0.3
212,417 - DDA3937_RS00925 0.55 +0.9
212,496 - DDA3937_RS00925 0.64 -1.1
212,496 - DDA3937_RS00925 0.64 -1.0
212,816 - -1.8
212,816 - +3.5
212,816 - -2.0
212,816 - +0.9
212,858 + +0.0
212,858 + +0.6
212,859 - -0.8
212,885 - -0.2
212,957 + -0.1
212,957 + +0.9
213,027 + DDA3937_RS00930 0.13 -1.2
213,027 + DDA3937_RS00930 0.13 -1.3
213,027 + DDA3937_RS00930 0.13 -1.3
213,027 + DDA3937_RS00930 0.13 -1.2
213,028 - DDA3937_RS00930 0.14 -0.2
213,028 - DDA3937_RS00930 0.14 -1.2
213,028 - +0.9
213,028 - DDA3937_RS00930 0.14 -0.2
213,028 - DDA3937_RS00930 0.14 -1.4
213,052 + DDA3937_RS00930 0.16 -0.4
213,269 - DDA3937_RS00930 0.36 -1.5
213,292 + DDA3937_RS00930 0.38 -1.2
213,293 - DDA3937_RS00930 0.38 +0.1
213,293 - DDA3937_RS00930 0.38 -1.3
213,293 - DDA3937_RS00930 0.38 -1.4
213,293 - DDA3937_RS00930 0.38 -1.1
213,293 - DDA3937_RS00930 0.38 -1.4
213,335 + DDA3937_RS00930 0.42 -0.1
213,335 + DDA3937_RS00930 0.42 +0.9
213,335 + DDA3937_RS00930 0.42 -0.3
213,336 - DDA3937_RS00930 0.42 -2.0
213,336 - DDA3937_RS00930 0.42 -1.0
213,337 + DDA3937_RS00930 0.42 +1.1
213,337 + DDA3937_RS00930 0.42 +0.5
213,337 + DDA3937_RS00930 0.42 +1.5
213,337 + DDA3937_RS00930 0.42 +2.8
213,338 - DDA3937_RS00930 0.42 -0.9
213,338 - DDA3937_RS00930 0.42 -1.3
213,338 - DDA3937_RS00930 0.42 -0.2
213,421 + DDA3937_RS00930 0.50 +0.4
213,422 - DDA3937_RS00930 0.50 +0.1
213,422 - DDA3937_RS00930 0.50 -1.4
213,454 + DDA3937_RS00930 0.53 -0.6
213,473 + DDA3937_RS00930 0.55 +2.9
213,725 + DDA3937_RS00930 0.79 -2.1
213,796 + DDA3937_RS00930 0.85 -0.8
213,796 + DDA3937_RS00930 0.85 -1.1
213,796 + DDA3937_RS00930 0.85 -1.4
213,797 - DDA3937_RS00930 0.85 -1.3
213,990 + -1.0
213,990 + +2.5
214,026 + -1.3
214,027 - -0.4
214,027 - -0.7
214,044 - +0.3
214,044 - -1.3
214,095 + -0.8
214,095 + -0.4
214,095 + -1.2
214,096 - +1.1
214,096 - -0.0
214,096 - -1.9
214,096 - +1.5
214,096 - -2.8
214,100 + +0.4
214,101 - +2.5
214,101 - +1.6
214,161 + -0.1
214,162 - +0.8
214,171 + -1.5
214,171 + +0.9
214,171 + +2.6
214,171 + -2.1
214,171 + -0.2
214,171 + -1.8
214,171 + +0.3
214,171 + +0.2
214,172 - +5.6
214,172 - +3.3
214,172 - +1.6
214,172 - +0.4
214,172 - +0.3
214,173 + -0.2
214,173 + -1.0
214,173 + +0.1
214,173 + -0.9
214,174 - -1.0
214,240 + -2.5
214,240 + -0.8
214,240 + -0.2
214,241 - -0.6
214,278 + +2.5
214,278 + +0.6
214,278 + -1.9
214,279 - +0.5
214,290 - +1.6
214,314 + -1.6
214,315 - +0.3

Or see this region's nucleotide sequence