Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00735 and DDA3937_RS00740 overlap by 4 nucleotides DDA3937_RS00740 and DDA3937_RS00745 are separated by 205 nucleotides DDA3937_RS00745 and DDA3937_RS00750 are separated by 73 nucleotides DDA3937_RS00750 and DDA3937_RS00755 are separated by 169 nucleotides
DDA3937_RS00735: DDA3937_RS00735 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 174,312 to 175,388
_RS00735
DDA3937_RS00740: DDA3937_RS00740 - glycerophosphodiester phosphodiesterase, at 175,385 to 176,134
_RS00740
DDA3937_RS00745: DDA3937_RS00745 - AEC family transporter, at 176,340 to 177,296
_RS00745
DDA3937_RS00750: DDA3937_RS00750 - DUF2756 domain-containing protein, at 177,370 to 177,654
_RS00750
DDA3937_RS00755: DDA3937_RS00755 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 177,824 to 178,288
_RS00755
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 175.349 kb on + strand at 175.349 kb on + strand at 175.350 kb on - strand at 175.350 kb on - strand at 175.350 kb on - strand at 175.351 kb on + strand at 175.351 kb on + strand at 175.351 kb on + strand at 175.352 kb on - strand at 175.352 kb on - strand at 175.352 kb on - strand at 175.706 kb on + strand, within DDA3937_RS00740 at 175.706 kb on + strand, within DDA3937_RS00740 at 175.723 kb on + strand, within DDA3937_RS00740 at 175.724 kb on - strand, within DDA3937_RS00740 at 175.960 kb on + strand, within DDA3937_RS00740 at 175.960 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.028 kb on - strand, within DDA3937_RS00740 at 176.029 kb on + strand, within DDA3937_RS00740 at 176.030 kb on - strand, within DDA3937_RS00740 at 176.030 kb on - strand, within DDA3937_RS00740 at 176.122 kb on + strand at 176.123 kb on - strand at 176.138 kb on + strand at 176.138 kb on + strand at 176.138 kb on + strand at 176.144 kb on + strand at 176.144 kb on + strand at 176.148 kb on + strand at 176.235 kb on - strand at 176.329 kb on - strand at 176.510 kb on + strand, within DDA3937_RS00745 at 176.511 kb on - strand, within DDA3937_RS00745 at 176.511 kb on - strand, within DDA3937_RS00745 at 176.582 kb on + strand, within DDA3937_RS00745 at 176.798 kb on - strand, within DDA3937_RS00745 at 176.901 kb on + strand, within DDA3937_RS00745 at 176.902 kb on - strand, within DDA3937_RS00745 at 177.018 kb on - strand, within DDA3937_RS00745 at 177.018 kb on - strand, within DDA3937_RS00745 at 177.048 kb on - strand, within DDA3937_RS00745 at 177.170 kb on + strand, within DDA3937_RS00745 at 177.292 kb on + strand at 177.293 kb on - strand at 177.295 kb on - strand at 177.295 kb on - strand at 177.300 kb on - strand at 177.340 kb on + strand at 177.340 kb on + strand at 177.367 kb on - strand at 177.374 kb on + strand at 177.443 kb on - strand at 177.484 kb on - strand, within DDA3937_RS00750 at 177.583 kb on + strand, within DDA3937_RS00750 at 177.611 kb on - strand, within DDA3937_RS00750 at 177.644 kb on - strand at 177.646 kb on + strand at 177.646 kb on + strand at 177.646 kb on + strand at 177.647 kb on - strand at 177.647 kb on - strand at 177.647 kb on - strand at 177.647 kb on - strand at 177.691 kb on - strand at 177.691 kb on - strand at 177.783 kb on - strand at 177.783 kb on - strand at 177.788 kb on - strand at 177.788 kb on - strand at 177.789 kb on + strand at 177.790 kb on - strand at 177.820 kb on + strand at 177.820 kb on + strand at 177.832 kb on + strand at 177.842 kb on + strand at 177.843 kb on - strand at 177.843 kb on - strand at 177.874 kb on + strand, within DDA3937_RS00755 at 177.875 kb on - strand, within DDA3937_RS00755 at 177.875 kb on - strand, within DDA3937_RS00755 at 177.877 kb on + strand, within DDA3937_RS00755 at 178.010 kb on + strand, within DDA3937_RS00755 at 178.010 kb on + strand, within DDA3937_RS00755 at 178.011 kb on - strand, within DDA3937_RS00755 at 178.011 kb on - strand, within DDA3937_RS00755 at 178.079 kb on + strand, within DDA3937_RS00755 at 178.094 kb on + strand, within DDA3937_RS00755 at 178.150 kb on + strand at 178.151 kb on - strand, within DDA3937_RS00755 at 178.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 175,349 + -1.3 175,349 + +0.0 175,350 - +0.8 175,350 - +1.5 175,350 - -0.9 175,351 + +0.1 175,351 + -1.9 175,351 + +0.1 175,352 - +0.2 175,352 - -1.0 175,352 - +2.0 175,706 + DDA3937_RS00740 0.43 -0.9 175,706 + DDA3937_RS00740 0.43 +0.4 175,723 + DDA3937_RS00740 0.45 -0.4 175,724 - DDA3937_RS00740 0.45 -0.5 175,960 + DDA3937_RS00740 0.77 -0.1 175,960 + DDA3937_RS00740 0.77 +0.3 176,027 + DDA3937_RS00740 0.86 -1.5 176,027 + DDA3937_RS00740 0.86 -1.6 176,027 + DDA3937_RS00740 0.86 -1.3 176,027 + DDA3937_RS00740 0.86 +2.6 176,028 - DDA3937_RS00740 0.86 -0.6 176,029 + DDA3937_RS00740 0.86 -2.5 176,030 - DDA3937_RS00740 0.86 -0.4 176,030 - DDA3937_RS00740 0.86 +0.3 176,122 + -1.5 176,123 - +1.5 176,138 + +0.3 176,138 + -0.4 176,138 + -1.2 176,144 + -0.4 176,144 + +1.4 176,148 + -0.7 176,235 - -1.7 176,329 - +0.9 176,510 + DDA3937_RS00745 0.18 -1.5 176,511 - DDA3937_RS00745 0.18 -1.2 176,511 - DDA3937_RS00745 0.18 -1.0 176,582 + DDA3937_RS00745 0.25 -1.5 176,798 - DDA3937_RS00745 0.48 -1.1 176,901 + DDA3937_RS00745 0.59 -0.5 176,902 - DDA3937_RS00745 0.59 -0.2 177,018 - DDA3937_RS00745 0.71 -0.9 177,018 - DDA3937_RS00745 0.71 -0.8 177,048 - DDA3937_RS00745 0.74 -1.7 177,170 + DDA3937_RS00745 0.87 +1.0 177,292 + -1.5 177,293 - -1.9 177,295 - -0.2 177,295 - -0.6 177,300 - +0.2 177,340 + -0.5 177,340 + +0.3 177,367 - -0.2 177,374 + +0.3 177,443 - +0.9 177,484 - DDA3937_RS00750 0.40 -1.5 177,583 + DDA3937_RS00750 0.75 -0.5 177,611 - DDA3937_RS00750 0.85 -0.1 177,644 - -0.1 177,646 + +0.9 177,646 + +2.2 177,646 + -1.5 177,647 - -1.5 177,647 - -1.8 177,647 - +0.9 177,647 - +0.6 177,691 - +0.7 177,691 - +2.7 177,783 - -2.6 177,783 - -0.3 177,788 - -1.6 177,788 - +0.0 177,789 + -0.2 177,790 - +0.2 177,820 + -0.0 177,820 + -0.4 177,832 + -2.4 177,842 + -0.4 177,843 - -1.7 177,843 - +0.1 177,874 + DDA3937_RS00755 0.11 +0.9 177,875 - DDA3937_RS00755 0.11 +2.2 177,875 - DDA3937_RS00755 0.11 +0.6 177,877 + DDA3937_RS00755 0.11 +3.5 178,010 + DDA3937_RS00755 0.40 -0.7 178,010 + DDA3937_RS00755 0.40 +1.8 178,011 - DDA3937_RS00755 0.40 -0.5 178,011 - DDA3937_RS00755 0.40 -0.2 178,079 + DDA3937_RS00755 0.55 +0.6 178,094 + DDA3937_RS00755 0.58 -1.1 178,150 + +0.9 178,151 - DDA3937_RS00755 0.70 -0.0 178,247 + +0.2
Or see this region's nucleotide sequence