Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00500

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
115,279	-		DDA3937_RS00485	0.58	-0.1
115,310	+		DDA3937_RS00485	0.64	+0.2
115,310	+		DDA3937_RS00485	0.64	+0.2
115,310	+		DDA3937_RS00485	0.64	+1.1
115,310	+		DDA3937_RS00485	0.64	-1.2
115,311	-		DDA3937_RS00485	0.64	+1.4
115,311	-		DDA3937_RS00485	0.64	-1.9
115,311	-		DDA3937_RS00485	0.64	+1.0
115,311	-		DDA3937_RS00485	0.64	-0.0
115,352	+		DDA3937_RS00485	0.72	-0.1
115,352	+		DDA3937_RS00485	0.72	-0.2
115,353	-		DDA3937_RS00485	0.72	+1.9
115,353	-		DDA3937_RS00485	0.72	+0.2
115,416	+		DDA3937_RS00485	0.84	+0.4
115,457	+				-0.5
115,457	+				+0.4
115,458	-				-0.2
115,458	-				-0.3
115,458	-				+1.0
115,493	-				-1.6
115,515	+				-0.6
115,515	+				-1.5
115,515	+				+3.8
115,515	+				-1.7
115,516	-				-1.4
115,516	-				+0.9
115,518	-				+1.1
115,529	-				-1.5
115,529	-				-1.8
115,538	-				+2.4
115,628	+		DDA3937_RS00490	0.29	-1.5
115,628	+		DDA3937_RS00490	0.29	-0.3
115,628	+		DDA3937_RS00490	0.29	-1.9
115,629	-		DDA3937_RS00490	0.29	+1.4
115,629	-		DDA3937_RS00490	0.29	-3.5
115,674	+		DDA3937_RS00490	0.49	+0.0
115,674	+		DDA3937_RS00490	0.49	-0.4
115,716	-		DDA3937_RS00490	0.68	-0.1
115,751	+		DDA3937_RS00490	0.83	+0.9
115,751	+		DDA3937_RS00490	0.83	+1.2
115,752	-		DDA3937_RS00490	0.83	-1.8
115,757	-		DDA3937_RS00490	0.86	+0.1
115,757	-		DDA3937_RS00490	0.86	+0.3
115,789	+				-1.8
115,789	+				+0.0
115,789	+				-1.4
115,789	+				-0.9
115,790	-				-1.1
115,790	-				-3.5
115,790	-				+2.3
115,790	-				+0.9
115,790	-				-0.7
115,790	-				-0.3
115,815	+				-1.4
115,815	+				+0.0
115,815	+				-2.3
115,816	-				+0.3
115,827	+				+0.1
115,827	+				+1.4
115,827	+				-1.9
115,827	+				+0.2
115,828	-				-0.9
115,828	-				+0.9
115,828	-				+0.5
115,879	-				-0.9
115,887	+				-1.0
115,888	-				-0.1
115,888	-				-1.2
115,907	+				-0.3
115,907	+				-0.1
115,908	-				-2.4
115,944	+		DDA3937_RS00495	0.14	+1.7
115,997	+		DDA3937_RS00495	0.33	-0.3
115,997	+		DDA3937_RS00495	0.33	+0.2
115,997	+		DDA3937_RS00495	0.33	-1.3
115,997	+		DDA3937_RS00495	0.33	-1.3
115,997	+		DDA3937_RS00495	0.33	+0.5
115,997	+		DDA3937_RS00495	0.33	+0.2
115,997	+		DDA3937_RS00495	0.33	+0.4
115,997	+		DDA3937_RS00495	0.33	-1.0
115,997	+				-0.1
115,998	-		DDA3937_RS00495	0.34	-1.7
116,028	+		DDA3937_RS00495	0.45	+1.7
116,028	+		DDA3937_RS00495	0.45	+0.2
116,029	-		DDA3937_RS00495	0.45	+0.9
116,029	-		DDA3937_RS00495	0.45	+1.5
116,035	-		DDA3937_RS00495	0.47	-0.7
116,035	-		DDA3937_RS00495	0.47	+1.2
116,035	-		DDA3937_RS00495	0.47	-1.7
116,156	+				+1.5
116,167	+				-1.0
116,167	+				-0.1
116,167	+				-0.9
116,178	+				-1.2
116,178	+				+0.2
116,178	+				+1.1
116,178	+				-0.5
116,178	+				+1.1
116,178	+				+0.0
116,202	-				+0.2
116,211	+				+0.0
116,211	+				-0.1
116,211	+				-2.1
116,212	-				-1.8
116,212	-				+0.7
116,212	-				-0.3
116,224	-				+0.1
116,243	-				-0.1
116,249	+				+0.7
116,249	+				-1.4
116,254	+				-0.1
116,254	+				-1.2
116,254	+				-1.0
116,254	+				+1.5
116,255	-				-0.1
116,255	-				+2.1
116,257	+				-1.2
116,257	+				-0.6
116,264	+				-1.4
116,264	+				+0.3
116,265	-				-2.1
116,265	-				+0.0
116,265	-				+0.9
116,265	-				+0.6
116,265	-				-1.5
116,277	+				-0.7
116,277	+				+0.5
116,341	+				-0.3
116,351	+				-0.3
116,351	+				-0.2
116,352	-				-1.2
116,422	+		DDA3937_RS00500	0.10	+0.6
116,422	+		DDA3937_RS00500	0.10	+0.4
116,423	-		DDA3937_RS00500	0.10	+2.0
116,559	+		DDA3937_RS00500	0.20	+0.8
116,559	+		DDA3937_RS00500	0.20	+1.6
116,560	-		DDA3937_RS00500	0.20	-0.9
116,560	-		DDA3937_RS00500	0.20	-0.1
116,651	+		DDA3937_RS00500	0.26	+0.1
116,652	-		DDA3937_RS00500	0.26	+0.6
116,926	-		DDA3937_RS00500	0.45	-0.1
116,926	-		DDA3937_RS00500	0.45	-1.5
116,926	-		DDA3937_RS00500	0.45	-0.2
116,926	-		DDA3937_RS00500	0.45	+1.0
116,926	-		DDA3937_RS00500	0.45	+2.4
116,926	-		DDA3937_RS00500	0.45	+0.7
116,926	-		DDA3937_RS00500	0.45	+0.8
116,926	-		DDA3937_RS00500	0.45	+0.7
116,926	-		DDA3937_RS00500	0.45	-0.4
117,106	-		DDA3937_RS00500	0.58	+1.0
117,106	-		DDA3937_RS00500	0.58	-0.3
117,225	+		DDA3937_RS00500	0.66	-2.2
117,226	-		DDA3937_RS00500	0.66	-0.8
117,226	-		DDA3937_RS00500	0.66	-0.2
117,312	+		DDA3937_RS00500	0.72	-0.7
117,312	+		DDA3937_RS00500	0.72	-0.4
117,312	+		DDA3937_RS00500	0.72	-1.7
117,313	-		DDA3937_RS00500	0.72	-0.5
117,313	-		DDA3937_RS00500	0.72	-1.9
117,313	-		DDA3937_RS00500	0.72	+0.2
117,313	-		DDA3937_RS00500	0.72	+0.3
117,313	-		DDA3937_RS00500	0.72	-2.0
117,422	+		DDA3937_RS00500	0.80	+0.0
117,422	+		DDA3937_RS00500	0.80	-2.0
117,422	+		DDA3937_RS00500	0.80	-0.5
117,422	+		DDA3937_RS00500	0.80	-0.7
117,422	+		DDA3937_RS00500	0.80	-0.6
117,423	-		DDA3937_RS00500	0.80	+0.5
117,423	-		DDA3937_RS00500	0.80	-0.3
117,747	+				+0.3
117,748	-				-0.1
117,748	-				-1.2
117,748	-				-2.0
117,886	-		DDA3937_RS00505	0.15	-0.9
117,891	+		DDA3937_RS00505	0.17	+0.0
117,891	+		DDA3937_RS00505	0.17	+0.1
117,891	+		DDA3937_RS00505	0.17	+0.1
117,891	+		DDA3937_RS00505	0.17	-0.1
117,891	+		DDA3937_RS00505	0.17	-0.1
117,891	+		DDA3937_RS00505	0.17	+0.1
117,892	-		DDA3937_RS00505	0.17	-1.2
117,892	-		DDA3937_RS00505	0.17	-0.8
117,892	-		DDA3937_RS00505	0.17	+0.1
117,892	-				+1.9
117,893	+		DDA3937_RS00505	0.17	-0.1
117,893	+		DDA3937_RS00505	0.17	-2.6
117,893	+		DDA3937_RS00505	0.17	+0.0
117,894	-		DDA3937_RS00505	0.17	-1.7
117,894	-		DDA3937_RS00505	0.17	-0.2
117,956	+		DDA3937_RS00505	0.34	-1.9
117,957	-		DDA3937_RS00505	0.34	+0.1
118,140	-		DDA3937_RS00505	0.84	-1.0
118,172	+				+1.1
118,172	+				+0.4
118,173	-				-1.3
118,184	+				+0.9
118,184	+				-1.8
118,185	-				-1.1
118,287	-				-0.2
118,287	-				-0.9
118,292	+				+0.1
118,292	+				-0.7
118,292	+				-1.4
118,292	+				-0.6
118,293	-				-1.2
118,297	+				+0.7
118,297	+				+1.2
118,298	-				+0.6
118,298	-				+1.2
118,298	-				-0.0
118,298	-				-0.0
118,298	-				-1.2
118,298	-				+0.1
118,561	-		DDA3937_RS00510	0.34	+0.2