Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00180 and DDA3937_RS00185 are separated by 24 nucleotides DDA3937_RS00185 and DDA3937_RS00190 are separated by 54 nucleotides DDA3937_RS00190 and DDA3937_RS00195 are separated by 306 nucleotides
DDA3937_RS00180: DDA3937_RS00180 - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 43,241 to 45,343
_RS00180
DDA3937_RS00185: DDA3937_RS00185 - DNA-directed RNA polymerase subunit omega, at 45,368 to 45,643
_RS00185
DDA3937_RS00190: DDA3937_RS00190 - guanylate kinase, at 45,698 to 46,321
_RS00190
DDA3937_RS00195: DDA3937_RS00195 - NAD-dependent DNA ligase LigB, at 46,628 to 48,310
_RS00195
Position (kb) 45
46 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 45.340 kb on - strand at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.508 kb on - strand, within DDA3937_RS00185 at 45.615 kb on - strand, within DDA3937_RS00185 at 45.633 kb on - strand at 45.633 kb on - strand at 45.644 kb on - strand at 45.651 kb on - strand at 45.651 kb on - strand at 45.685 kb on - strand at 45.685 kb on - strand at 45.685 kb on - strand at 45.710 kb on + strand at 45.711 kb on - strand at 45.711 kb on - strand at 45.723 kb on - strand at 46.341 kb on - strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.386 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.388 kb on - strand at 46.491 kb on + strand at 46.492 kb on - strand at 46.493 kb on + strand at 46.558 kb on + strand at 46.558 kb on + strand at 46.558 kb on + strand at 46.558 kb on + strand at 46.559 kb on - strand at 46.577 kb on + strand at 46.577 kb on + strand at 46.578 kb on - strand at 46.578 kb on - strand at 46.578 kb on - strand at 46.580 kb on + strand at 46.580 kb on + strand at 46.580 kb on + strand at 46.580 kb on + strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand at 46.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 45,340 - +1.5 45,508 - DDA3937_RS00185 0.51 +0.1 45,508 - DDA3937_RS00185 0.51 -0.7 45,508 - DDA3937_RS00185 0.51 -0.4 45,508 - DDA3937_RS00185 0.51 -0.7 45,508 - DDA3937_RS00185 0.51 -0.1 45,508 - DDA3937_RS00185 0.51 -0.5 45,508 - DDA3937_RS00185 0.51 -1.5 45,615 - DDA3937_RS00185 0.89 -0.7 45,633 - +0.2 45,633 - -0.1 45,644 - -2.0 45,651 - +0.6 45,651 - -1.5 45,685 - -2.4 45,685 - +0.0 45,685 - -0.2 45,710 + +1.5 45,711 - -0.4 45,711 - -0.8 45,723 - -0.0 46,341 - -0.6 46,386 - -2.3 46,386 - -0.1 46,386 - -1.5 46,388 - -0.7 46,388 - +1.0 46,388 - -0.9 46,388 - -0.4 46,388 - -0.2 46,388 - -1.6 46,388 - -0.9 46,388 - +0.0 46,388 - +0.8 46,491 + +1.9 46,492 - +2.0 46,493 + +0.2 46,558 + -1.1 46,558 + -2.2 46,558 + +0.9 46,558 + +0.2 46,559 - +0.3 46,577 + -0.9 46,577 + +0.0 46,578 - -0.1 46,578 - -0.7 46,578 - -1.8 46,580 + -0.2 46,580 + -1.3 46,580 + +3.8 46,580 + -0.0 46,581 - +1.2 46,581 - -1.9 46,581 - +0.9 46,581 - -0.1 46,581 - +2.0 46,581 - -0.2 46,581 - -0.4
Or see this region's nucleotide sequence