Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18690

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18685 and DDA3937_RS18690 are separated by 51 nucleotidesDDA3937_RS18690 and DDA3937_RS18695 are separated by 65 nucleotides DDA3937_RS18685: DDA3937_RS18685 - WbeA, at 4,270,578 to 4,271,777 _RS18685 DDA3937_RS18690: DDA3937_RS18690 - glycosyltransferase, at 4,271,829 to 4,272,956 _RS18690 DDA3937_RS18695: DDA3937_RS18695 - D-2-hydroxyacid dehydrogenase, at 4,273,022 to 4,273,948 _RS18695 Position (kb) 4271 4272 4273Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4270.855 kb on + strand, within DDA3937_RS18685at 4270.943 kb on + strand, within DDA3937_RS18685at 4270.960 kb on + strand, within DDA3937_RS18685at 4270.960 kb on + strand, within DDA3937_RS18685at 4270.960 kb on + strand, within DDA3937_RS18685at 4270.960 kb on + strand, within DDA3937_RS18685at 4270.961 kb on - strand, within DDA3937_RS18685at 4270.965 kb on - strand, within DDA3937_RS18685at 4270.965 kb on - strand, within DDA3937_RS18685at 4270.987 kb on - strand, within DDA3937_RS18685at 4271.006 kb on + strand, within DDA3937_RS18685at 4271.006 kb on + strand, within DDA3937_RS18685at 4271.006 kb on + strand, within DDA3937_RS18685at 4271.007 kb on - strand, within DDA3937_RS18685at 4271.079 kb on - strand, within DDA3937_RS18685at 4271.115 kb on - strand, within DDA3937_RS18685at 4271.119 kb on - strand, within DDA3937_RS18685at 4271.134 kb on + strand, within DDA3937_RS18685at 4271.135 kb on - strand, within DDA3937_RS18685at 4271.135 kb on - strand, within DDA3937_RS18685at 4271.282 kb on + strand, within DDA3937_RS18685at 4271.310 kb on + strand, within DDA3937_RS18685at 4271.411 kb on + strand, within DDA3937_RS18685at 4271.445 kb on + strand, within DDA3937_RS18685at 4271.445 kb on + strand, within DDA3937_RS18685at 4271.446 kb on - strand, within DDA3937_RS18685at 4271.487 kb on + strand, within DDA3937_RS18685at 4271.502 kb on + strand, within DDA3937_RS18685at 4271.503 kb on - strand, within DDA3937_RS18685at 4271.503 kb on - strand, within DDA3937_RS18685at 4271.503 kb on - strand, within DDA3937_RS18685at 4271.546 kb on + strand, within DDA3937_RS18685at 4271.547 kb on - strand, within DDA3937_RS18685at 4271.600 kb on - strand, within DDA3937_RS18685at 4271.619 kb on + strand, within DDA3937_RS18685at 4271.643 kb on - strand, within DDA3937_RS18685at 4271.653 kb on - strand, within DDA3937_RS18685at 4271.653 kb on - strand, within DDA3937_RS18685at 4271.735 kb on - strandat 4271.754 kb on + strandat 4271.875 kb on - strandat 4271.949 kb on + strand, within DDA3937_RS18690at 4271.952 kb on - strand, within DDA3937_RS18690at 4271.975 kb on + strand, within DDA3937_RS18690at 4271.977 kb on + strand, within DDA3937_RS18690at 4271.996 kb on + strand, within DDA3937_RS18690at 4271.996 kb on + strand, within DDA3937_RS18690at 4271.997 kb on - strand, within DDA3937_RS18690at 4271.997 kb on - strand, within DDA3937_RS18690at 4272.028 kb on + strand, within DDA3937_RS18690at 4272.093 kb on - strandat 4272.262 kb on + strand, within DDA3937_RS18690at 4272.262 kb on + strand, within DDA3937_RS18690at 4272.262 kb on + strand, within DDA3937_RS18690at 4272.262 kb on + strand, within DDA3937_RS18690at 4272.263 kb on - strand, within DDA3937_RS18690at 4272.444 kb on + strand, within DDA3937_RS18690at 4272.445 kb on - strand, within DDA3937_RS18690at 4272.466 kb on + strand, within DDA3937_RS18690at 4272.467 kb on - strand, within DDA3937_RS18690at 4272.535 kb on + strand, within DDA3937_RS18690at 4272.596 kb on + strand, within DDA3937_RS18690at 4272.614 kb on - strand, within DDA3937_RS18690at 4272.614 kb on - strand, within DDA3937_RS18690at 4272.697 kb on - strand, within DDA3937_RS18690at 4272.701 kb on + strand, within DDA3937_RS18690at 4272.743 kb on + strand, within DDA3937_RS18690at 4272.816 kb on + strand, within DDA3937_RS18690at 4272.884 kb on - strandat 4272.925 kb on - strandat 4272.941 kb on + strandat 4272.955 kb on - strandat 4272.966 kb on + strandat 4272.966 kb on + strandat 4272.966 kb on + strandat 4272.967 kb on - strandat 4272.967 kb on - strandat 4272.967 kb on - strandat 4272.967 kb on - strandat 4272.987 kb on + strandat 4273.018 kb on - strandat 4273.294 kb on + strand, within DDA3937_RS18695at 4273.294 kb on + strand, within DDA3937_RS18695at 4273.295 kb on - strand, within DDA3937_RS18695at 4273.338 kb on + strandat 4273.338 kb on + strand, within DDA3937_RS18695at 4273.338 kb on + strand, within DDA3937_RS18695at 4273.338 kb on + strand, within DDA3937_RS18695at 4273.339 kb on - strand, within DDA3937_RS18695at 4273.339 kb on - strand, within DDA3937_RS18695at 4273.342 kb on + strand, within DDA3937_RS18695at 4273.352 kb on - strand, within DDA3937_RS18695at 4273.352 kb on - strand, within DDA3937_RS18695at 4273.352 kb on - strand, within DDA3937_RS18695at 4273.352 kb on - strand, within DDA3937_RS18695at 4273.383 kb on + strand, within DDA3937_RS18695at 4273.384 kb on - strand, within DDA3937_RS18695at 4273.384 kb on - strand, within DDA3937_RS18695at 4273.384 kb on - strand, within DDA3937_RS18695at 4273.408 kb on + strand, within DDA3937_RS18695at 4273.427 kb on + strand, within DDA3937_RS18695at 4273.427 kb on + strand, within DDA3937_RS18695at 4273.428 kb on - strand, within DDA3937_RS18695at 4273.461 kb on + strand, within DDA3937_RS18695at 4273.462 kb on - strand, within DDA3937_RS18695at 4273.462 kb on - strand, within DDA3937_RS18695at 4273.574 kb on + strand, within DDA3937_RS18695at 4273.574 kb on + strand, within DDA3937_RS18695at 4273.574 kb on + strand, within DDA3937_RS18695at 4273.644 kb on + strand, within DDA3937_RS18695at 4273.644 kb on + strand, within DDA3937_RS18695at 4273.656 kb on + strand, within DDA3937_RS18695at 4273.666 kb on + strand, within DDA3937_RS18695at 4273.761 kb on - strand, within DDA3937_RS18695at 4273.874 kb on + strandat 4273.874 kb on + strandat 4273.875 kb on - strandat 4273.934 kb on + strandat 4273.934 kb on + strandat 4273.939 kb on + strandat 4273.939 kb on + strandat 4273.939 kb on + strandat 4273.939 kb on + strandat 4273.939 kb on + strandat 4273.939 kb on + strandat 4273.939 kb on + strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strandat 4273.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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4,270,855 + DDA3937_RS18685 0.23 +0.0
4,270,943 + DDA3937_RS18685 0.30 -1.1
4,270,960 + DDA3937_RS18685 0.32 +0.3
4,270,960 + DDA3937_RS18685 0.32 +0.9
4,270,960 + DDA3937_RS18685 0.32 -0.8
4,270,960 + DDA3937_RS18685 0.32 +1.4
4,270,961 - DDA3937_RS18685 0.32 -1.0
4,270,965 - DDA3937_RS18685 0.32 +1.5
4,270,965 - DDA3937_RS18685 0.32 -0.8
4,270,987 - DDA3937_RS18685 0.34 -2.2
4,271,006 + DDA3937_RS18685 0.36 +0.4
4,271,006 + DDA3937_RS18685 0.36 -0.1
4,271,006 + DDA3937_RS18685 0.36 +1.1
4,271,007 - DDA3937_RS18685 0.36 -0.5
4,271,079 - DDA3937_RS18685 0.42 +0.4
4,271,115 - DDA3937_RS18685 0.45 -0.1
4,271,119 - DDA3937_RS18685 0.45 -0.7
4,271,134 + DDA3937_RS18685 0.46 -0.6
4,271,135 - DDA3937_RS18685 0.46 +0.6
4,271,135 - DDA3937_RS18685 0.46 -1.3
4,271,282 + DDA3937_RS18685 0.59 -0.1
4,271,310 + DDA3937_RS18685 0.61 +0.7
4,271,411 + DDA3937_RS18685 0.69 -0.3
4,271,445 + DDA3937_RS18685 0.72 -0.5
4,271,445 + DDA3937_RS18685 0.72 +0.6
4,271,446 - DDA3937_RS18685 0.72 -1.6
4,271,487 + DDA3937_RS18685 0.76 -1.2
4,271,502 + DDA3937_RS18685 0.77 -0.0
4,271,503 - DDA3937_RS18685 0.77 -0.4
4,271,503 - DDA3937_RS18685 0.77 -0.0
4,271,503 - DDA3937_RS18685 0.77 +0.4
4,271,546 + DDA3937_RS18685 0.81 +0.1
4,271,547 - DDA3937_RS18685 0.81 -0.0
4,271,600 - DDA3937_RS18685 0.85 -1.3
4,271,619 + DDA3937_RS18685 0.87 +1.5
4,271,643 - DDA3937_RS18685 0.89 -0.6
4,271,653 - DDA3937_RS18685 0.90 -0.8
4,271,653 - DDA3937_RS18685 0.90 +0.2
4,271,735 - -0.5
4,271,754 + -0.2
4,271,875 - -0.3
4,271,949 + DDA3937_RS18690 0.11 -1.0
4,271,952 - DDA3937_RS18690 0.11 -1.1
4,271,975 + DDA3937_RS18690 0.13 -1.4
4,271,977 + DDA3937_RS18690 0.13 +0.0
4,271,996 + DDA3937_RS18690 0.15 +0.0
4,271,996 + DDA3937_RS18690 0.15 -0.5
4,271,997 - DDA3937_RS18690 0.15 +0.5
4,271,997 - DDA3937_RS18690 0.15 -1.3
4,272,028 + DDA3937_RS18690 0.18 -2.0
4,272,093 - +0.7
4,272,262 + DDA3937_RS18690 0.38 -2.1
4,272,262 + DDA3937_RS18690 0.38 +0.0
4,272,262 + DDA3937_RS18690 0.38 +0.0
4,272,262 + DDA3937_RS18690 0.38 -0.8
4,272,263 - DDA3937_RS18690 0.38 -1.8
4,272,444 + DDA3937_RS18690 0.55 +0.0
4,272,445 - DDA3937_RS18690 0.55 -1.6
4,272,466 + DDA3937_RS18690 0.56 +0.3
4,272,467 - DDA3937_RS18690 0.57 -2.0
4,272,535 + DDA3937_RS18690 0.63 -2.3
4,272,596 + DDA3937_RS18690 0.68 -0.4
4,272,614 - DDA3937_RS18690 0.70 -0.7
4,272,614 - DDA3937_RS18690 0.70 -0.5
4,272,697 - DDA3937_RS18690 0.77 +0.7
4,272,701 + DDA3937_RS18690 0.77 -0.8
4,272,743 + DDA3937_RS18690 0.81 -1.1
4,272,816 + DDA3937_RS18690 0.88 -0.6
4,272,884 - -1.5
4,272,925 - +0.8
4,272,941 + -1.8
4,272,955 - -0.9
4,272,966 + +0.1
4,272,966 + +0.7
4,272,966 + -1.5
4,272,967 - -2.3
4,272,967 - +0.3
4,272,967 - -1.4
4,272,967 - -2.1
4,272,987 + +0.2
4,273,018 - +0.0
4,273,294 + DDA3937_RS18695 0.29 +0.4
4,273,294 + DDA3937_RS18695 0.29 -1.3
4,273,295 - DDA3937_RS18695 0.29 -1.8
4,273,338 + +1.3
4,273,338 + DDA3937_RS18695 0.34 -0.3
4,273,338 + DDA3937_RS18695 0.34 -2.7
4,273,338 + DDA3937_RS18695 0.34 -0.6
4,273,339 - DDA3937_RS18695 0.34 -0.6
4,273,339 - DDA3937_RS18695 0.34 +1.1
4,273,342 + DDA3937_RS18695 0.35 +0.7
4,273,352 - DDA3937_RS18695 0.36 -1.3
4,273,352 - DDA3937_RS18695 0.36 -0.4
4,273,352 - DDA3937_RS18695 0.36 +1.3
4,273,352 - DDA3937_RS18695 0.36 +0.8
4,273,383 + DDA3937_RS18695 0.39 -1.1
4,273,384 - DDA3937_RS18695 0.39 +0.4
4,273,384 - DDA3937_RS18695 0.39 -0.3
4,273,384 - DDA3937_RS18695 0.39 +0.0
4,273,408 + DDA3937_RS18695 0.42 -0.9
4,273,427 + DDA3937_RS18695 0.44 +0.7
4,273,427 + DDA3937_RS18695 0.44 +3.9
4,273,428 - DDA3937_RS18695 0.44 -0.6
4,273,461 + DDA3937_RS18695 0.47 -0.4
4,273,462 - DDA3937_RS18695 0.47 +1.0
4,273,462 - DDA3937_RS18695 0.47 +1.6
4,273,574 + DDA3937_RS18695 0.60 +0.5
4,273,574 + DDA3937_RS18695 0.60 -1.1
4,273,574 + DDA3937_RS18695 0.60 +0.4
4,273,644 + DDA3937_RS18695 0.67 -0.3
4,273,644 + DDA3937_RS18695 0.67 -1.0
4,273,656 + DDA3937_RS18695 0.68 -0.3
4,273,666 + DDA3937_RS18695 0.69 -2.0
4,273,761 - DDA3937_RS18695 0.80 -0.8
4,273,874 + +0.1
4,273,874 + +2.6
4,273,875 - +0.6
4,273,934 + -0.2
4,273,934 + +0.5
4,273,939 + -0.3
4,273,939 + +2.1
4,273,939 + -0.6
4,273,939 + -0.7
4,273,939 + +1.6
4,273,939 + -0.1
4,273,939 + +0.0
4,273,940 - -0.7
4,273,940 - +1.1
4,273,940 - -0.9
4,273,940 - -0.4
4,273,940 - -0.2
4,273,940 - -0.8
4,273,940 - -1.9
4,273,940 - -1.8
4,273,940 - +0.3
4,273,940 - -0.4
4,273,940 - +0.5
4,273,940 - -1.6
4,273,940 - +0.0
4,273,940 - -0.3
4,273,940 - +0.5
4,273,940 - +1.1

Or see this region's nucleotide sequence