Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18580 and DDA3937_RS18585 are separated by 122 nucleotides DDA3937_RS18585 and DDA3937_RS18590 are separated by 99 nucleotides DDA3937_RS18590 and DDA3937_RS18595 are separated by 60 nucleotides
DDA3937_RS18580: DDA3937_RS18580 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 4,246,932 to 4,248,314
_RS18580
DDA3937_RS18585: DDA3937_RS18585 - adenylosuccinate synthase, at 4,248,437 to 4,249,735
_RS18585
DDA3937_RS18590: DDA3937_RS18590 - DUF2065 domain-containing protein, at 4,249,835 to 4,250,035
_RS18590
DDA3937_RS18595: DDA3937_RS18595 - protease modulator HflC, at 4,250,096 to 4,251,091
_RS18595
Position (kb) 4248
4249
4250 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 4247.458 kb on - strand, within DDA3937_RS18580 at 4247.458 kb on - strand, within DDA3937_RS18580 at 4247.473 kb on + strand, within DDA3937_RS18580 at 4247.473 kb on + strand, within DDA3937_RS18580 at 4247.473 kb on + strand, within DDA3937_RS18580 at 4247.473 kb on + strand, within DDA3937_RS18580 at 4247.483 kb on + strand, within DDA3937_RS18580 at 4247.617 kb on + strand, within DDA3937_RS18580 at 4247.617 kb on + strand, within DDA3937_RS18580 at 4247.618 kb on - strand, within DDA3937_RS18580 at 4247.618 kb on - strand, within DDA3937_RS18580 at 4247.618 kb on - strand, within DDA3937_RS18580 at 4247.715 kb on + strand, within DDA3937_RS18580 at 4247.715 kb on + strand, within DDA3937_RS18580 at 4247.716 kb on - strand, within DDA3937_RS18580 at 4247.716 kb on - strand, within DDA3937_RS18580 at 4247.962 kb on + strand, within DDA3937_RS18580 at 4247.962 kb on + strand, within DDA3937_RS18580 at 4247.963 kb on - strand, within DDA3937_RS18580 at 4247.969 kb on + strand, within DDA3937_RS18580 at 4248.052 kb on + strand, within DDA3937_RS18580 at 4248.104 kb on + strand, within DDA3937_RS18580 at 4248.104 kb on + strand, within DDA3937_RS18580 at 4248.104 kb on + strand, within DDA3937_RS18580 at 4248.104 kb on + strand, within DDA3937_RS18580 at 4248.105 kb on - strand, within DDA3937_RS18580 at 4248.105 kb on - strand, within DDA3937_RS18580 at 4248.153 kb on + strand, within DDA3937_RS18580 at 4248.218 kb on + strand at 4248.218 kb on + strand at 4248.218 kb on + strand at 4248.219 kb on - strand at 4248.219 kb on - strand at 4248.219 kb on - strand at 4248.219 kb on - strand at 4248.251 kb on + strand at 4248.251 kb on + strand at 4248.252 kb on - strand at 4248.323 kb on + strand at 4248.324 kb on - strand at 4248.324 kb on - strand at 4248.334 kb on + strand at 4248.335 kb on - strand at 4248.349 kb on + strand at 4248.350 kb on - strand at 4248.387 kb on - strand at 4248.770 kb on - strand, within DDA3937_RS18585 at 4248.960 kb on + strand, within DDA3937_RS18585 at 4249.024 kb on - strand, within DDA3937_RS18585 at 4249.445 kb on - strand, within DDA3937_RS18585 at 4249.770 kb on + strand at 4249.771 kb on - strand at 4249.771 kb on - strand at 4249.771 kb on - strand at 4249.863 kb on + strand, within DDA3937_RS18590 at 4249.863 kb on + strand, within DDA3937_RS18590 at 4249.864 kb on - strand, within DDA3937_RS18590 at 4249.864 kb on - strand, within DDA3937_RS18590 at 4249.864 kb on - strand, within DDA3937_RS18590 at 4249.866 kb on + strand, within DDA3937_RS18590 at 4249.866 kb on + strand, within DDA3937_RS18590 at 4249.866 kb on + strand, within DDA3937_RS18590 at 4249.866 kb on + strand at 4249.866 kb on + strand, within DDA3937_RS18590 at 4249.867 kb on - strand, within DDA3937_RS18590 at 4249.867 kb on - strand, within DDA3937_RS18590 at 4249.867 kb on - strand, within DDA3937_RS18590 at 4249.867 kb on - strand, within DDA3937_RS18590 at 4249.961 kb on - strand, within DDA3937_RS18590 at 4249.997 kb on + strand, within DDA3937_RS18590 at 4249.998 kb on - strand, within DDA3937_RS18590 at 4249.998 kb on - strand, within DDA3937_RS18590 at 4249.998 kb on - strand, within DDA3937_RS18590 at 4249.998 kb on - strand, within DDA3937_RS18590 at 4250.189 kb on - strand at 4250.194 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,247,458 - DDA3937_RS18580 0.38 -0.4 4,247,458 - DDA3937_RS18580 0.38 -1.4 4,247,473 + DDA3937_RS18580 0.39 +1.8 4,247,473 + DDA3937_RS18580 0.39 -0.9 4,247,473 + DDA3937_RS18580 0.39 -0.0 4,247,473 + DDA3937_RS18580 0.39 -0.2 4,247,483 + DDA3937_RS18580 0.40 +0.1 4,247,617 + DDA3937_RS18580 0.50 +0.4 4,247,617 + DDA3937_RS18580 0.50 +0.3 4,247,618 - DDA3937_RS18580 0.50 +0.9 4,247,618 - DDA3937_RS18580 0.50 -2.0 4,247,618 - DDA3937_RS18580 0.50 -0.2 4,247,715 + DDA3937_RS18580 0.57 -0.3 4,247,715 + DDA3937_RS18580 0.57 +2.4 4,247,716 - DDA3937_RS18580 0.57 -1.2 4,247,716 - DDA3937_RS18580 0.57 +3.8 4,247,962 + DDA3937_RS18580 0.74 -0.1 4,247,962 + DDA3937_RS18580 0.74 -1.0 4,247,963 - DDA3937_RS18580 0.75 -0.1 4,247,969 + DDA3937_RS18580 0.75 -1.2 4,248,052 + DDA3937_RS18580 0.81 +6.2 4,248,104 + DDA3937_RS18580 0.85 -1.0 4,248,104 + DDA3937_RS18580 0.85 +0.1 4,248,104 + DDA3937_RS18580 0.85 +0.3 4,248,104 + DDA3937_RS18580 0.85 -0.4 4,248,105 - DDA3937_RS18580 0.85 +0.3 4,248,105 - DDA3937_RS18580 0.85 +3.2 4,248,153 + DDA3937_RS18580 0.88 +1.0 4,248,218 + +0.4 4,248,218 + +7.6 4,248,218 + +0.9 4,248,219 - -0.5 4,248,219 - -0.4 4,248,219 - +0.6 4,248,219 - +2.3 4,248,251 + +1.9 4,248,251 + -0.3 4,248,252 - +1.3 4,248,323 + +1.0 4,248,324 - -0.2 4,248,324 - -0.4 4,248,334 + -0.9 4,248,335 - +0.6 4,248,349 + +0.2 4,248,350 - -0.5 4,248,387 - -0.2 4,248,770 - DDA3937_RS18585 0.26 -1.0 4,248,960 + DDA3937_RS18585 0.40 -2.3 4,249,024 - DDA3937_RS18585 0.45 -0.7 4,249,445 - DDA3937_RS18585 0.78 -0.3 4,249,770 + -0.0 4,249,771 - +1.3 4,249,771 - -0.4 4,249,771 - +0.7 4,249,863 + DDA3937_RS18590 0.14 -0.4 4,249,863 + DDA3937_RS18590 0.14 +0.0 4,249,864 - DDA3937_RS18590 0.14 +0.1 4,249,864 - DDA3937_RS18590 0.14 -0.5 4,249,864 - DDA3937_RS18590 0.14 -0.6 4,249,866 + DDA3937_RS18590 0.15 -1.3 4,249,866 + DDA3937_RS18590 0.15 +1.0 4,249,866 + DDA3937_RS18590 0.15 -0.1 4,249,866 + +1.3 4,249,866 + DDA3937_RS18590 0.15 -0.7 4,249,867 - DDA3937_RS18590 0.16 -2.5 4,249,867 - DDA3937_RS18590 0.16 -0.5 4,249,867 - DDA3937_RS18590 0.16 +0.6 4,249,867 - DDA3937_RS18590 0.16 +0.1 4,249,961 - DDA3937_RS18590 0.63 +1.1 4,249,997 + DDA3937_RS18590 0.81 +0.4 4,249,998 - DDA3937_RS18590 0.81 +0.2 4,249,998 - DDA3937_RS18590 0.81 -1.3 4,249,998 - DDA3937_RS18590 0.81 -1.7 4,249,998 - DDA3937_RS18590 0.81 -0.1 4,250,189 - +0.6 4,250,194 + +2.3
Or see this region's nucleotide sequence