Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18325 and DDA3937_RS18330 overlap by 20 nucleotides DDA3937_RS18330 and DDA3937_RS18335 are separated by 3 nucleotides DDA3937_RS18335 and DDA3937_RS18340 overlap by 1 nucleotides
DDA3937_RS18325: DDA3937_RS18325 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 4,185,705 to 4,186,655
_RS18325
DDA3937_RS18330: DDA3937_RS18330 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 4,186,636 to 4,187,109
_RS18330
DDA3937_RS18335: DDA3937_RS18335 - signal peptidase II, at 4,187,113 to 4,187,619
_RS18335
DDA3937_RS18340: DDA3937_RS18340 - isoleucine--tRNA ligase, at 4,187,619 to 4,190,444
_RS18340
Position (kb) 4186
4187
4188 Strain fitness (log2 ratio) -2
-1
0
1 at 4185.707 kb on - strand at 4185.729 kb on - strand at 4186.691 kb on - strand, within DDA3937_RS18330 at 4186.786 kb on - strand, within DDA3937_RS18330 at 4186.786 kb on - strand, within DDA3937_RS18330 at 4186.786 kb on - strand, within DDA3937_RS18330 at 4186.903 kb on - strand, within DDA3937_RS18330
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,185,707 - -0.6 4,185,729 - +0.3 4,186,691 - DDA3937_RS18330 0.12 +1.7 4,186,786 - DDA3937_RS18330 0.32 -0.4 4,186,786 - DDA3937_RS18330 0.32 -2.2 4,186,786 - DDA3937_RS18330 0.32 -1.3 4,186,903 - DDA3937_RS18330 0.56 -1.0
Or see this region's nucleotide sequence