Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12845

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,926,831	-		DDA3937_RS12840	0.67	-0.3
2,926,943	-				-0.9
2,927,107	-		DDA3937_RS12840	0.80	-0.1
2,927,107	-		DDA3937_RS12840	0.80	+0.8
2,927,107	-		DDA3937_RS12840	0.80	-1.1
2,927,306	+		DDA3937_RS12840	0.90	-1.9
2,927,307	-		DDA3937_RS12840	0.90	-0.2
2,927,307	-		DDA3937_RS12840	0.90	-1.5
2,927,307	-		DDA3937_RS12840	0.90	-0.9
2,927,307	-		DDA3937_RS12840	0.90	+1.1
2,927,307	-		DDA3937_RS12840	0.90	+0.3
2,927,325	-				-0.6
2,927,390	+				+0.7
2,927,390	+				-0.6
2,927,391	-				+0.0
2,927,392	+				-0.3
2,927,392	+				-0.5
2,927,393	-				-1.0
2,927,393	-				-1.2
2,927,393	-				-0.9
2,927,532	+				-1.6
2,927,532	+				-0.2
2,927,532	+				-0.6
2,927,533	-				-0.3
2,927,535	+				-0.9
2,927,535	+				-0.6
2,927,536	-				-0.9
2,927,540	+				+1.1
2,927,555	+				-0.3
2,927,555	+				+0.7
2,927,555	+				-0.1
2,927,555	+				+0.0
2,927,556	-				+0.1
2,927,558	+				-1.2
2,927,558	+				-0.6
2,927,559	-				-0.5
2,927,601	+				-1.0
2,927,646	-				-0.9
2,927,665	+				+0.1
2,927,665	+				-1.9
2,927,665	+				-1.5
2,927,665	+				+0.7
2,927,665	+				-0.7
2,927,667	+				-0.2
2,927,667	+				-1.5
2,927,667	+				-0.8
2,927,667	+				+0.1
2,927,667	+				-1.1
2,927,667	+				-1.3
2,927,667	+				+0.2
2,927,667	+				-2.3
2,927,667	+				-0.8
2,927,667	+				-2.1
2,927,668	-				-0.3
2,927,668	-				-0.9
2,927,668	-				-0.3
2,927,668	-				-1.0
2,927,668	-				-1.1
2,927,671	+				+1.8
2,927,671	+				+0.7
2,927,671	+				-0.4
2,927,671	+				+0.1
2,927,671	+				-1.1
2,927,671	+				-1.4
2,927,672	-				+0.1
2,927,672	-				-1.6
2,927,672	-				-0.6
2,927,672	-				+0.6
2,927,672	-				-1.5
2,927,672	-				-1.1
2,927,691	-				+1.7
2,927,705	-				+0.6
2,927,705	-				-0.2
2,927,705	-				-1.1
2,927,738	+				-0.9
2,927,738	+				-0.6
2,927,738	+				-1.6
2,927,739	-				-0.0
2,927,953	+		DDA3937_RS12845	0.20	+0.7
2,927,953	+		DDA3937_RS12845	0.20	-1.1
2,927,954	-		DDA3937_RS12845	0.20	-0.3
2,927,954	-		DDA3937_RS12845	0.20	+3.7
2,927,954	-		DDA3937_RS12845	0.20	+2.1
2,927,954	-		DDA3937_RS12845	0.20	+3.9
2,927,954	-		DDA3937_RS12845	0.20	+0.1
2,927,954	-		DDA3937_RS12845	0.20	-1.5
2,928,065	-		DDA3937_RS12845	0.31	-0.6
2,928,274	+		DDA3937_RS12845	0.49	+0.1
2,928,339	+		DDA3937_RS12845	0.55	+0.2
2,928,368	+		DDA3937_RS12845	0.58	-0.8
2,928,369	-		DDA3937_RS12845	0.58	+0.6
2,928,369	-		DDA3937_RS12845	0.58	-0.4
2,928,447	-		DDA3937_RS12845	0.65	-0.4
2,928,447	-		DDA3937_RS12845	0.65	+0.2
2,928,447	-		DDA3937_RS12845	0.65	+1.8
2,928,555	+		DDA3937_RS12845	0.75	-0.9
2,928,555	+		DDA3937_RS12845	0.75	-0.5
2,928,556	-		DDA3937_RS12845	0.75	+0.4
2,928,556	-		DDA3937_RS12845	0.75	-0.9
2,928,855	+				-0.1
2,928,855	+				+0.1
2,928,856	-				-1.5
2,928,871	+				-1.6
2,928,878	-				+1.7
2,928,887	+				-1.4
2,928,887	+				-1.1
2,928,887	+				-0.3
2,928,895	+				-0.1
2,928,895	+				+0.5
2,928,896	-				+0.8
2,928,896	-				+0.2
2,928,907	+				-1.4
2,928,907	+				-1.1
2,928,907	+				-1.1
2,928,907	+				-0.0
2,928,907	+				-2.1
2,928,907	+				-0.4
2,928,907	+				-2.3
2,928,908	-				-0.6
2,928,908	-				-1.3
2,928,908	-				+0.5
2,928,908	-				+0.4
2,928,908	-				+0.7
2,928,908	-				+0.4
2,928,908	-				+0.3
2,928,909	+				-1.2
2,928,910	-				-0.3
2,928,942	+				-0.3
2,928,943	-				+0.3
2,929,079	-		DDA3937_RS12850	0.28	-0.6
2,929,302	+		DDA3937_RS12850	0.68	-0.9
2,929,302	+		DDA3937_RS12850	0.68	+0.5
2,929,303	-		DDA3937_RS12850	0.68	-0.1
2,929,348	+		DDA3937_RS12850	0.76	-1.1
2,929,349	-		DDA3937_RS12850	0.76	-0.1
2,929,349	-		DDA3937_RS12850	0.76	+0.3
2,929,460	-				-0.7
2,929,472	+				-0.0
2,929,473	-				+0.4
2,929,487	-				-0.1
2,929,487	-				-0.2
2,929,492	+				-0.9
2,929,492	+				+1.5
2,929,492	+				+0.1
2,929,492	+				-1.4
2,929,493	-				+0.8
2,929,493	-				+0.3
2,929,493	-				-0.9
2,929,493	-				-0.1
2,929,496	+				-0.8
2,929,496	+				-0.3
2,929,496	+				-1.2
2,929,497	-				-0.6
2,929,497	-				-1.6
2,929,497	-				+1.1
2,929,497	-				+0.7
2,929,497	-				+0.2
2,929,497	-				-0.8
2,929,497	-				-1.5
2,929,497	-				-0.5
2,929,497	-				-1.6
2,929,510	+				-0.5
2,929,553	-				-0.4
2,929,577	+				-1.8
2,929,577	+				-0.9
2,929,619	+				+0.4
2,929,619	+				+0.3
2,929,620	-				-0.3
2,929,621	+				-0.3
2,929,621	+				+1.0
2,929,621	+				-0.6
2,929,621	+				-0.1
2,929,621	+				-0.1
2,929,621	+				+5.6
2,929,621	+				+0.1
2,929,621	+				-0.3
2,929,622	-				+0.4
2,929,622	-				-0.3
2,929,622	-				-1.9
2,929,622	-				-0.7
2,929,622	-				+1.0
2,929,623	+				-0.1
2,929,623	+				-0.3
2,929,623	+				-2.0
2,929,623	+				+1.7
2,929,624	-				-1.3
2,929,624	-				-0.6
2,929,624	-				-0.3
2,929,624	-				-0.6
2,929,624	-				-0.1
2,929,624	-				+0.5
2,929,624	-				-1.4
2,929,624	-				+0.2
2,929,624	-				-0.7
2,929,624	-				+0.4
2,929,624	-				-1.0
2,929,634	+				-0.3
2,929,634	+				-0.4
2,929,658	-				-2.3
2,929,662	+				+0.4
2,929,694	-				-0.4
2,929,710	+				-0.3
2,929,711	-				-0.1
2,929,734	-				-0.5
2,929,734	-				-1.1
2,929,734	-				-0.4
2,929,751	-				-1.1
2,929,753	-				-2.0
2,929,753	-				-0.6
2,929,762	-				+0.7
2,929,762	-				-1.3
2,929,762	-				-1.3