Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11180

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,541,833	-		DDA3937_RS11175	0.41	-0.4
2,541,848	+		DDA3937_RS11175	0.42	-0.0
2,541,943	+		DDA3937_RS11175	0.48	-3.7
2,541,944	-		DDA3937_RS11175	0.48	+0.8
2,542,081	+		DDA3937_RS11175	0.57	-0.3
2,542,081	+		DDA3937_RS11175	0.57	+1.0
2,542,082	-		DDA3937_RS11175	0.57	-0.6
2,542,102	+		DDA3937_RS11175	0.58	+0.4
2,542,102	+		DDA3937_RS11175	0.58	-1.6
2,542,103	-		DDA3937_RS11175	0.58	-0.0
2,542,103	-		DDA3937_RS11175	0.58	-1.0
2,542,180	+		DDA3937_RS11175	0.63	-1.3
2,542,180	+		DDA3937_RS11175	0.63	-0.9
2,542,181	-		DDA3937_RS11175	0.63	-2.5
2,542,181	-		DDA3937_RS11175	0.63	+0.3
2,542,192	+		DDA3937_RS11175	0.64	-1.0
2,542,192	+		DDA3937_RS11175	0.64	-0.3
2,542,193	-		DDA3937_RS11175	0.64	-0.8
2,542,193	-		DDA3937_RS11175	0.64	-0.6
2,542,195	+		DDA3937_RS11175	0.64	-0.6
2,542,195	+		DDA3937_RS11175	0.64	-2.1
2,542,195	+		DDA3937_RS11175	0.64	-0.8
2,542,195	+		DDA3937_RS11175	0.64	+1.2
2,542,195	+		DDA3937_RS11175	0.64	-0.4
2,542,195	+		DDA3937_RS11175	0.64	-1.0
2,542,196	-		DDA3937_RS11175	0.64	-0.4
2,542,196	-		DDA3937_RS11175	0.64	-2.2
2,542,196	-		DDA3937_RS11175	0.64	+2.0
2,542,196	-				+0.6
2,542,196	-		DDA3937_RS11175	0.64	+0.2
2,542,196	-		DDA3937_RS11175	0.64	-0.7
2,542,196	-		DDA3937_RS11175	0.64	+1.5
2,542,198	-		DDA3937_RS11175	0.64	+0.4
2,542,214	-		DDA3937_RS11175	0.65	+0.1
2,542,251	+		DDA3937_RS11175	0.68	+0.6
2,542,251	+		DDA3937_RS11175	0.68	-0.9
2,542,251	+		DDA3937_RS11175	0.68	-0.4
2,542,251	+		DDA3937_RS11175	0.68	-1.8
2,542,251	+		DDA3937_RS11175	0.68	-0.2
2,542,252	-		DDA3937_RS11175	0.68	-0.0
2,542,252	-		DDA3937_RS11175	0.68	-1.4
2,542,252	-		DDA3937_RS11175	0.68	-1.0
2,542,252	-		DDA3937_RS11175	0.68	-0.0
2,542,347	+		DDA3937_RS11175	0.74	+1.6
2,542,347	+		DDA3937_RS11175	0.74	+1.1
2,542,415	+		DDA3937_RS11175	0.79	-0.2
2,542,434	+		DDA3937_RS11175	0.80	+1.0
2,542,435	-		DDA3937_RS11175	0.80	-1.2
2,542,438	+		DDA3937_RS11175	0.80	-0.6
2,542,439	-		DDA3937_RS11175	0.80	-1.8
2,542,533	+		DDA3937_RS11175	0.86	-0.1
2,542,534	-		DDA3937_RS11175	0.86	-1.6
2,542,557	-		DDA3937_RS11175	0.88	-0.9
2,542,585	+		DDA3937_RS11175	0.90	+0.2
2,542,585	+		DDA3937_RS11175	0.90	-0.8
2,542,585	+		DDA3937_RS11175	0.90	+0.6
2,542,586	-		DDA3937_RS11175	0.90	-0.9
2,542,586	-		DDA3937_RS11175	0.90	-1.0
2,542,645	+				+0.1
2,542,646	-				-0.3
2,542,646	-				+0.9
2,542,653	-				+2.5
2,542,729	-				+0.1
2,542,739	+				+1.1
2,542,748	+				-2.1
2,542,748	+				-1.6
2,542,748	+				-0.9
2,542,748	+				-1.4
2,542,749	-				-0.9
2,542,749	-				+0.6
2,542,751	+				-0.2
2,542,751	+				+0.1
2,542,752	-				-1.6
2,542,752	-				-0.7
2,542,816	-				-0.2
2,542,816	-				-0.3
2,542,816	-				-0.8
2,542,822	+				+0.6
2,542,928	-				+2.6
2,542,928	-		DDA3937_RS11180	0.15	-1.1
2,542,964	-		DDA3937_RS11180	0.20	-1.3
2,543,005	+		DDA3937_RS11180	0.26	-1.0
2,543,006	-		DDA3937_RS11180	0.26	-1.8
2,543,027	-		DDA3937_RS11180	0.29	-1.4
2,543,027	-		DDA3937_RS11180	0.29	-0.7
2,543,060	-		DDA3937_RS11180	0.33	-0.4
2,543,104	+		DDA3937_RS11180	0.39	-0.7
2,543,156	+		DDA3937_RS11180	0.47	+0.6
2,543,385	+		DDA3937_RS11180	0.78	-0.8
2,543,386	-		DDA3937_RS11180	0.78	+0.6
2,543,493	-				+0.8
2,543,497	+				-0.8
2,543,498	-				-0.0
2,543,533	-				-1.6
2,543,534	+				-2.1
2,543,535	-				-1.3
2,543,540	+				-1.6
2,543,541	-				-0.8
2,543,541	-				+0.6
2,543,566	-				-0.3
2,543,590	-				+0.4
2,543,590	-				+0.6
2,543,604	-				-0.9
2,543,604	-				+1.4
2,543,612	+				+0.2
2,543,612	+				-1.3
2,543,613	-				-0.2
2,543,613	-				+0.6
2,543,613	-				-1.3
2,543,613	-				+0.1
2,543,613	-				-0.8
2,543,613	-				-2.6
2,543,613	-				+0.3
2,543,617	+				-1.0
2,543,617	+				+0.6
2,543,617	+				-0.8
2,543,617	+				-0.9
2,543,618	-				+0.1
2,543,618	-				-1.8
2,543,618	-				-0.3
2,543,618	-				-0.7
2,543,618	-				-2.1
2,543,637	-				-0.5
2,543,647	-				-1.3
2,543,689	+				-0.5
2,543,690	-				-0.0
2,543,734	+				-0.6
2,543,848	+		DDA3937_RS23190	0.41	+1.6
2,543,852	-		DDA3937_RS23190	0.44	-1.9
2,543,857	+		DDA3937_RS23190	0.46	+0.2
2,543,862	-		DDA3937_RS23190	0.49	-1.6
2,543,949	+				-1.6
2,543,950	-				-0.6
2,544,013	-				-1.0
2,544,021	+				-1.8
2,544,022	-				+0.8
2,544,041	-				-1.0
2,544,044	-				-2.6
2,544,044	-				+1.0
2,544,044	-				+0.6
2,544,044	-				-0.3
2,544,118	+				-1.0
2,544,119	-				+0.6
2,544,230	+				-1.0
2,544,231	-				-2.8
2,544,255	+				-0.3
2,544,256	-				-0.4
2,544,261	+				-0.7
2,544,262	-				-0.8
2,544,323	+				-1.9
2,544,323	+				-0.2
2,544,332	+				-1.3
2,544,332	+				+4.1
2,544,332	+				-0.4
2,544,333	-				-0.5
2,544,333	-				+0.6
2,544,333	-				-1.6
2,544,333	-				-1.7
2,544,333	-				-0.4
2,544,333	-				-1.7
2,544,334	+				-1.4
2,544,334	+				-0.6
2,544,334	+				-0.2
2,544,335	-				-0.4
2,544,335	-				-2.0
2,544,335	-				+0.4
2,544,335	-				-0.8
2,544,335	-				-0.8
2,544,335	-				-0.9
2,544,335	-				-0.4
2,544,337	+				-0.8
2,544,337	+				-0.3
2,544,399	+				-1.3
2,544,399	+				-1.3
2,544,399	+				-0.0
2,544,399	+				-0.0
2,544,400	-				-0.4
2,544,496	-				-0.8