Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10330

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS10325 and DDA3937_RS10330 are separated by 79 nucleotidesDDA3937_RS10330 and DDA3937_RS10335 are separated by 168 nucleotides DDA3937_RS10325: DDA3937_RS10325 - formyltetrahydrofolate deformylase, at 2,326,456 to 2,327,307 _RS10325 DDA3937_RS10330: DDA3937_RS10330 - YchJ family protein, at 2,327,387 to 2,327,854 _RS10330 DDA3937_RS10335: DDA3937_RS10335 - patatin-like phospholipase RssA, at 2,328,023 to 2,328,928 _RS10335 Position (kb) 2327 2328Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 2326.411 kb on + strandat 2326.425 kb on + strandat 2326.426 kb on - strandat 2326.426 kb on - strandat 2326.426 kb on - strandat 2326.431 kb on + strandat 2326.507 kb on + strandat 2326.507 kb on + strandat 2326.508 kb on - strandat 2326.508 kb on - strandat 2326.515 kb on - strandat 2326.580 kb on + strand, within DDA3937_RS10325at 2326.581 kb on - strand, within DDA3937_RS10325at 2326.581 kb on - strand, within DDA3937_RS10325at 2326.581 kb on - strand, within DDA3937_RS10325at 2326.581 kb on - strand, within DDA3937_RS10325at 2326.581 kb on - strand, within DDA3937_RS10325at 2326.581 kb on - strand, within DDA3937_RS10325at 2326.581 kb on - strand, within DDA3937_RS10325at 2326.581 kb on - strand, within DDA3937_RS10325at 2326.581 kb on - strand, within DDA3937_RS10325at 2326.584 kb on + strand, within DDA3937_RS10325at 2326.584 kb on + strand, within DDA3937_RS10325at 2326.585 kb on - strand, within DDA3937_RS10325at 2326.646 kb on + strand, within DDA3937_RS10325at 2326.646 kb on + strand, within DDA3937_RS10325at 2326.647 kb on - strand, within DDA3937_RS10325at 2326.686 kb on - strand, within DDA3937_RS10325at 2326.686 kb on - strand, within DDA3937_RS10325at 2326.747 kb on - strand, within DDA3937_RS10325at 2326.747 kb on - strand, within DDA3937_RS10325at 2326.761 kb on - strand, within DDA3937_RS10325at 2326.796 kb on + strand, within DDA3937_RS10325at 2326.796 kb on + strand, within DDA3937_RS10325at 2326.797 kb on - strand, within DDA3937_RS10325at 2326.797 kb on - strand, within DDA3937_RS10325at 2326.814 kb on + strand, within DDA3937_RS10325at 2326.815 kb on - strandat 2326.815 kb on - strand, within DDA3937_RS10325at 2326.815 kb on - strand, within DDA3937_RS10325at 2326.815 kb on - strand, within DDA3937_RS10325at 2326.815 kb on - strand, within DDA3937_RS10325at 2326.815 kb on - strand, within DDA3937_RS10325at 2326.824 kb on + strand, within DDA3937_RS10325at 2326.824 kb on + strand, within DDA3937_RS10325at 2326.825 kb on - strand, within DDA3937_RS10325at 2326.827 kb on - strand, within DDA3937_RS10325at 2326.918 kb on + strand, within DDA3937_RS10325at 2327.133 kb on + strand, within DDA3937_RS10325at 2327.133 kb on + strand, within DDA3937_RS10325at 2327.134 kb on - strand, within DDA3937_RS10325at 2327.134 kb on - strand, within DDA3937_RS10325at 2327.183 kb on + strand, within DDA3937_RS10325at 2327.183 kb on + strand, within DDA3937_RS10325at 2327.183 kb on + strand, within DDA3937_RS10325at 2327.184 kb on - strand, within DDA3937_RS10325at 2327.184 kb on - strand, within DDA3937_RS10325at 2327.184 kb on - strand, within DDA3937_RS10325at 2327.184 kb on - strand, within DDA3937_RS10325at 2327.184 kb on - strand, within DDA3937_RS10325at 2327.184 kb on - strand, within DDA3937_RS10325at 2327.202 kb on + strand, within DDA3937_RS10325at 2327.275 kb on + strandat 2327.385 kb on + strandat 2327.385 kb on + strandat 2327.385 kb on + strandat 2327.386 kb on - strandat 2327.386 kb on - strandat 2327.388 kb on + strandat 2327.388 kb on + strandat 2327.388 kb on + strandat 2327.388 kb on + strandat 2327.389 kb on - strandat 2327.475 kb on + strand, within DDA3937_RS10330at 2327.475 kb on + strand, within DDA3937_RS10330at 2327.475 kb on + strand, within DDA3937_RS10330at 2327.475 kb on + strand, within DDA3937_RS10330at 2327.476 kb on - strand, within DDA3937_RS10330at 2327.476 kb on - strand, within DDA3937_RS10330at 2327.476 kb on - strand, within DDA3937_RS10330at 2327.476 kb on - strand, within DDA3937_RS10330at 2327.476 kb on - strand, within DDA3937_RS10330at 2327.476 kb on - strandat 2327.476 kb on - strand, within DDA3937_RS10330at 2327.476 kb on - strand, within DDA3937_RS10330at 2327.476 kb on - strand, within DDA3937_RS10330at 2327.476 kb on - strand, within DDA3937_RS10330at 2327.478 kb on + strand, within DDA3937_RS10330at 2327.478 kb on + strand, within DDA3937_RS10330at 2327.479 kb on - strand, within DDA3937_RS10330at 2327.479 kb on - strand, within DDA3937_RS10330at 2327.479 kb on - strand, within DDA3937_RS10330at 2327.556 kb on + strandat 2327.577 kb on + strand, within DDA3937_RS10330at 2327.712 kb on + strandat 2327.857 kb on + strandat 2327.857 kb on + strandat 2327.858 kb on - strandat 2327.858 kb on - strandat 2327.858 kb on - strandat 2327.858 kb on - strandat 2327.880 kb on - strandat 2327.886 kb on - strandat 2327.889 kb on + strandat 2327.890 kb on - strandat 2327.890 kb on - strandat 2327.890 kb on - strandat 2327.920 kb on - strandat 2327.920 kb on - strandat 2327.951 kb on - strandat 2327.967 kb on + strandat 2327.967 kb on + strandat 2327.968 kb on - strandat 2327.968 kb on - strandat 2327.968 kb on - strandat 2327.968 kb on - strandat 2327.971 kb on + strandat 2327.972 kb on - strandat 2327.990 kb on - strandat 2327.994 kb on + strandat 2327.995 kb on - strandat 2327.995 kb on - strandat 2328.020 kb on - strandat 2328.020 kb on - strandat 2328.033 kb on + strandat 2328.034 kb on - strandat 2328.034 kb on - strandat 2328.038 kb on - strandat 2328.038 kb on - strandat 2328.038 kb on - strandat 2328.038 kb on - strandat 2328.170 kb on + strand, within DDA3937_RS10335at 2328.193 kb on + strand, within DDA3937_RS10335at 2328.194 kb on - strand, within DDA3937_RS10335at 2328.194 kb on - strand, within DDA3937_RS10335at 2328.300 kb on + strand, within DDA3937_RS10335at 2328.300 kb on + strand, within DDA3937_RS10335at 2328.300 kb on + strand, within DDA3937_RS10335at 2328.300 kb on + strand, within DDA3937_RS10335at 2328.300 kb on + strand, within DDA3937_RS10335at 2328.300 kb on + strand, within DDA3937_RS10335at 2328.300 kb on + strand, within DDA3937_RS10335at 2328.301 kb on - strand, within DDA3937_RS10335at 2328.301 kb on - strand, within DDA3937_RS10335at 2328.301 kb on - strand, within DDA3937_RS10335at 2328.301 kb on - strand, within DDA3937_RS10335at 2328.301 kb on - strand, within DDA3937_RS10335at 2328.313 kb on - strand, within DDA3937_RS10335at 2328.313 kb on - strand, within DDA3937_RS10335at 2328.316 kb on + strand, within DDA3937_RS10335at 2328.316 kb on + strand, within DDA3937_RS10335at 2328.316 kb on + strand, within DDA3937_RS10335at 2328.317 kb on - strand, within DDA3937_RS10335at 2328.317 kb on - strand, within DDA3937_RS10335at 2328.317 kb on - strandat 2328.317 kb on - strand, within DDA3937_RS10335at 2328.325 kb on + strand, within DDA3937_RS10335at 2328.325 kb on + strand, within DDA3937_RS10335at 2328.325 kb on + strand, within DDA3937_RS10335at 2328.326 kb on - strand, within DDA3937_RS10335at 2328.326 kb on - strand, within DDA3937_RS10335at 2328.326 kb on - strand, within DDA3937_RS10335at 2328.326 kb on - strand, within DDA3937_RS10335at 2328.347 kb on + strand, within DDA3937_RS10335at 2328.347 kb on + strand, within DDA3937_RS10335at 2328.348 kb on - strand, within DDA3937_RS10335at 2328.364 kb on + strand, within DDA3937_RS10335at 2328.364 kb on + strand, within DDA3937_RS10335at 2328.364 kb on + strand, within DDA3937_RS10335at 2328.365 kb on - strand, within DDA3937_RS10335at 2328.408 kb on + strand, within DDA3937_RS10335at 2328.408 kb on + strand, within DDA3937_RS10335at 2328.408 kb on + strand, within DDA3937_RS10335at 2328.408 kb on + strand, within DDA3937_RS10335at 2328.408 kb on + strand, within DDA3937_RS10335at 2328.408 kb on + strand, within DDA3937_RS10335at 2328.409 kb on - strand, within DDA3937_RS10335at 2328.409 kb on - strand, within DDA3937_RS10335at 2328.414 kb on + strand, within DDA3937_RS10335at 2328.414 kb on + strand, within DDA3937_RS10335at 2328.414 kb on + strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.415 kb on - strand, within DDA3937_RS10335at 2328.418 kb on + strand, within DDA3937_RS10335at 2328.419 kb on - strand, within DDA3937_RS10335at 2328.436 kb on + strand, within DDA3937_RS10335at 2328.602 kb on - strand, within DDA3937_RS10335at 2328.736 kb on + strandat 2328.736 kb on + strand, within DDA3937_RS10335at 2328.736 kb on + strand, within DDA3937_RS10335at 2328.736 kb on + strand, within DDA3937_RS10335at 2328.737 kb on - strand, within DDA3937_RS10335at 2328.737 kb on - strand, within DDA3937_RS10335at 2328.738 kb on + strand, within DDA3937_RS10335at 2328.739 kb on - strand, within DDA3937_RS10335at 2328.739 kb on - strand, within DDA3937_RS10335at 2328.772 kb on + strand, within DDA3937_RS10335at 2328.795 kb on + strand, within DDA3937_RS10335at 2328.795 kb on + strand, within DDA3937_RS10335at 2328.795 kb on + strand, within DDA3937_RS10335at 2328.795 kb on + strand, within DDA3937_RS10335at 2328.795 kb on + strand, within DDA3937_RS10335at 2328.795 kb on + strand, within DDA3937_RS10335at 2328.796 kb on - strand, within DDA3937_RS10335at 2328.796 kb on - strand, within DDA3937_RS10335at 2328.796 kb on - strand, within DDA3937_RS10335at 2328.796 kb on - strand, within DDA3937_RS10335at 2328.809 kb on + strand, within DDA3937_RS10335at 2328.809 kb on + strand, within DDA3937_RS10335at 2328.809 kb on + strand, within DDA3937_RS10335

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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2,326,411 + +0.2
2,326,425 + +1.1
2,326,426 - -0.3
2,326,426 - -1.0
2,326,426 - -0.0
2,326,431 + -0.5
2,326,507 + -0.0
2,326,507 + -0.8
2,326,508 - -0.6
2,326,508 - -2.5
2,326,515 - -1.1
2,326,580 + DDA3937_RS10325 0.15 -2.1
2,326,581 - DDA3937_RS10325 0.15 -2.0
2,326,581 - DDA3937_RS10325 0.15 -1.0
2,326,581 - DDA3937_RS10325 0.15 -0.0
2,326,581 - DDA3937_RS10325 0.15 +3.1
2,326,581 - DDA3937_RS10325 0.15 -1.0
2,326,581 - DDA3937_RS10325 0.15 -0.0
2,326,581 - DDA3937_RS10325 0.15 -1.4
2,326,581 - DDA3937_RS10325 0.15 -0.0
2,326,581 - DDA3937_RS10325 0.15 -1.7
2,326,584 + DDA3937_RS10325 0.15 -1.5
2,326,584 + DDA3937_RS10325 0.15 -1.6
2,326,585 - DDA3937_RS10325 0.15 -1.5
2,326,646 + DDA3937_RS10325 0.22 -3.0
2,326,646 + DDA3937_RS10325 0.22 -1.9
2,326,647 - DDA3937_RS10325 0.22 -2.4
2,326,686 - DDA3937_RS10325 0.27 -1.5
2,326,686 - DDA3937_RS10325 0.27 +1.4
2,326,747 - DDA3937_RS10325 0.34 -0.5
2,326,747 - DDA3937_RS10325 0.34 -0.3
2,326,761 - DDA3937_RS10325 0.36 -0.8
2,326,796 + DDA3937_RS10325 0.40 -0.9
2,326,796 + DDA3937_RS10325 0.40 -1.5
2,326,797 - DDA3937_RS10325 0.40 -1.0
2,326,797 - DDA3937_RS10325 0.40 +1.4
2,326,814 + DDA3937_RS10325 0.42 -1.9
2,326,815 - -0.8
2,326,815 - DDA3937_RS10325 0.42 -1.2
2,326,815 - DDA3937_RS10325 0.42 +0.3
2,326,815 - DDA3937_RS10325 0.42 -0.5
2,326,815 - DDA3937_RS10325 0.42 -3.4
2,326,815 - DDA3937_RS10325 0.42 -0.0
2,326,824 + DDA3937_RS10325 0.43 -3.2
2,326,824 + DDA3937_RS10325 0.43 -0.5
2,326,825 - DDA3937_RS10325 0.43 -0.6
2,326,827 - DDA3937_RS10325 0.44 -0.9
2,326,918 + DDA3937_RS10325 0.54 -1.3
2,327,133 + DDA3937_RS10325 0.79 -0.7
2,327,133 + DDA3937_RS10325 0.79 -0.7
2,327,134 - DDA3937_RS10325 0.80 +2.8
2,327,134 - DDA3937_RS10325 0.80 +1.2
2,327,183 + DDA3937_RS10325 0.85 +0.5
2,327,183 + DDA3937_RS10325 0.85 -1.4
2,327,183 + DDA3937_RS10325 0.85 -1.3
2,327,184 - DDA3937_RS10325 0.85 -2.2
2,327,184 - DDA3937_RS10325 0.85 -1.4
2,327,184 - DDA3937_RS10325 0.85 -1.3
2,327,184 - DDA3937_RS10325 0.85 +2.1
2,327,184 - DDA3937_RS10325 0.85 -2.3
2,327,184 - DDA3937_RS10325 0.85 -1.0
2,327,202 + DDA3937_RS10325 0.88 -1.3
2,327,275 + -2.2
2,327,385 + -1.3
2,327,385 + -1.5
2,327,385 + -2.5
2,327,386 - -1.5
2,327,386 - -0.5
2,327,388 + -0.5
2,327,388 + -1.0
2,327,388 + -1.7
2,327,388 + -0.0
2,327,389 - +0.5
2,327,475 + DDA3937_RS10330 0.19 -1.6
2,327,475 + DDA3937_RS10330 0.19 -1.3
2,327,475 + DDA3937_RS10330 0.19 -2.0
2,327,475 + DDA3937_RS10330 0.19 -0.9
2,327,476 - DDA3937_RS10330 0.19 -0.4
2,327,476 - DDA3937_RS10330 0.19 -0.7
2,327,476 - DDA3937_RS10330 0.19 -1.0
2,327,476 - DDA3937_RS10330 0.19 -1.6
2,327,476 - DDA3937_RS10330 0.19 -1.0
2,327,476 - +1.5
2,327,476 - DDA3937_RS10330 0.19 +2.1
2,327,476 - DDA3937_RS10330 0.19 -0.8
2,327,476 - DDA3937_RS10330 0.19 -1.9
2,327,476 - DDA3937_RS10330 0.19 -2.8
2,327,478 + DDA3937_RS10330 0.19 -2.3
2,327,478 + DDA3937_RS10330 0.19 -0.0
2,327,479 - DDA3937_RS10330 0.20 -0.8
2,327,479 - DDA3937_RS10330 0.20 -1.5
2,327,479 - DDA3937_RS10330 0.20 -0.0
2,327,556 + +1.5
2,327,577 + DDA3937_RS10330 0.41 -1.0
2,327,712 + +7.4
2,327,857 + -1.2
2,327,857 + -0.5
2,327,858 - +0.4
2,327,858 - -0.8
2,327,858 - +0.2
2,327,858 - -1.6
2,327,880 - -1.7
2,327,886 - +0.5
2,327,889 + -0.0
2,327,890 - +1.1
2,327,890 - -0.8
2,327,890 - -1.3
2,327,920 - -1.2
2,327,920 - -0.4
2,327,951 - -0.5
2,327,967 + -1.5
2,327,967 + +3.9
2,327,968 - -2.6
2,327,968 - -1.0
2,327,968 - -0.8
2,327,968 - -0.5
2,327,971 + -1.0
2,327,972 - -0.9
2,327,990 - -0.6
2,327,994 + +1.5
2,327,995 - +0.0
2,327,995 - -2.5
2,328,020 - -1.6
2,328,020 - +0.5
2,328,033 + -0.1
2,328,034 - -0.3
2,328,034 - -0.0
2,328,038 - -1.4
2,328,038 - -1.0
2,328,038 - +0.5
2,328,038 - +1.5
2,328,170 + DDA3937_RS10335 0.16 -0.2
2,328,193 + DDA3937_RS10335 0.19 -0.3
2,328,194 - DDA3937_RS10335 0.19 -1.0
2,328,194 - DDA3937_RS10335 0.19 -1.0
2,328,300 + DDA3937_RS10335 0.31 +0.2
2,328,300 + DDA3937_RS10335 0.31 +0.1
2,328,300 + DDA3937_RS10335 0.31 -0.4
2,328,300 + DDA3937_RS10335 0.31 -0.0
2,328,300 + DDA3937_RS10335 0.31 -1.1
2,328,300 + DDA3937_RS10335 0.31 +1.1
2,328,300 + DDA3937_RS10335 0.31 -1.7
2,328,301 - DDA3937_RS10335 0.31 -0.4
2,328,301 - DDA3937_RS10335 0.31 -0.1
2,328,301 - DDA3937_RS10335 0.31 -0.9
2,328,301 - DDA3937_RS10335 0.31 -0.4
2,328,301 - DDA3937_RS10335 0.31 +0.0
2,328,313 - DDA3937_RS10335 0.32 -1.8
2,328,313 - DDA3937_RS10335 0.32 +0.1
2,328,316 + DDA3937_RS10335 0.32 -0.7
2,328,316 + DDA3937_RS10335 0.32 -1.5
2,328,316 + DDA3937_RS10335 0.32 +1.1
2,328,317 - DDA3937_RS10335 0.32 -0.4
2,328,317 - DDA3937_RS10335 0.32 -1.1
2,328,317 - +2.6
2,328,317 - DDA3937_RS10335 0.32 -0.3
2,328,325 + DDA3937_RS10335 0.33 -0.4
2,328,325 + DDA3937_RS10335 0.33 +0.5
2,328,325 + DDA3937_RS10335 0.33 -0.0
2,328,326 - DDA3937_RS10335 0.33 -0.1
2,328,326 - DDA3937_RS10335 0.33 +1.6
2,328,326 - DDA3937_RS10335 0.33 -0.2
2,328,326 - DDA3937_RS10335 0.33 -2.7
2,328,347 + DDA3937_RS10335 0.36 -1.4
2,328,347 + DDA3937_RS10335 0.36 +1.6
2,328,348 - DDA3937_RS10335 0.36 +0.4
2,328,364 + DDA3937_RS10335 0.38 -2.1
2,328,364 + DDA3937_RS10335 0.38 +0.9
2,328,364 + DDA3937_RS10335 0.38 +0.7
2,328,365 - DDA3937_RS10335 0.38 +4.8
2,328,408 + DDA3937_RS10335 0.42 -1.6
2,328,408 + DDA3937_RS10335 0.42 +0.3
2,328,408 + DDA3937_RS10335 0.42 -1.6
2,328,408 + DDA3937_RS10335 0.42 +1.2
2,328,408 + DDA3937_RS10335 0.42 -0.3
2,328,408 + DDA3937_RS10335 0.42 -1.3
2,328,409 - DDA3937_RS10335 0.43 -0.8
2,328,409 - DDA3937_RS10335 0.43 -0.1
2,328,414 + DDA3937_RS10335 0.43 -0.2
2,328,414 + DDA3937_RS10335 0.43 +1.2
2,328,414 + DDA3937_RS10335 0.43 +0.2
2,328,415 - DDA3937_RS10335 0.43 +0.3
2,328,415 - DDA3937_RS10335 0.43 -2.1
2,328,415 - DDA3937_RS10335 0.43 -0.6
2,328,415 - DDA3937_RS10335 0.43 +3.8
2,328,415 - DDA3937_RS10335 0.43 +1.2
2,328,415 - DDA3937_RS10335 0.43 -1.3
2,328,415 - DDA3937_RS10335 0.43 -0.4
2,328,415 - DDA3937_RS10335 0.43 +0.6
2,328,415 - DDA3937_RS10335 0.43 +0.1
2,328,415 - DDA3937_RS10335 0.43 -0.6
2,328,418 + DDA3937_RS10335 0.44 -0.1
2,328,419 - DDA3937_RS10335 0.44 -1.5
2,328,436 + DDA3937_RS10335 0.46 -0.3
2,328,602 - DDA3937_RS10335 0.64 -0.5
2,328,736 + +0.2
2,328,736 + DDA3937_RS10335 0.79 -0.4
2,328,736 + DDA3937_RS10335 0.79 -0.4
2,328,736 + DDA3937_RS10335 0.79 -0.3
2,328,737 - DDA3937_RS10335 0.79 -1.5
2,328,737 - DDA3937_RS10335 0.79 -1.6
2,328,738 + DDA3937_RS10335 0.79 -0.4
2,328,739 - DDA3937_RS10335 0.79 -0.0
2,328,739 - DDA3937_RS10335 0.79 +0.3
2,328,772 + DDA3937_RS10335 0.83 +0.6
2,328,795 + DDA3937_RS10335 0.85 -0.4
2,328,795 + DDA3937_RS10335 0.85 +0.1
2,328,795 + DDA3937_RS10335 0.85 +0.0
2,328,795 + DDA3937_RS10335 0.85 +0.1
2,328,795 + DDA3937_RS10335 0.85 +1.3
2,328,795 + DDA3937_RS10335 0.85 -1.4
2,328,796 - DDA3937_RS10335 0.85 -1.6
2,328,796 - DDA3937_RS10335 0.85 +0.2
2,328,796 - DDA3937_RS10335 0.85 +0.5
2,328,796 - DDA3937_RS10335 0.85 +0.1
2,328,809 + DDA3937_RS10335 0.87 -2.0
2,328,809 + DDA3937_RS10335 0.87 +0.7
2,328,809 + DDA3937_RS10335 0.87 -0.3

Or see this region's nucleotide sequence