Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09770 and DDA3937_RS09775 are separated by 99 nucleotides DDA3937_RS09775 and DDA3937_RS09780 are separated by 32 nucleotides DDA3937_RS09780 and DDA3937_RS09785 overlap by 1 nucleotides
DDA3937_RS09770: DDA3937_RS09770 - fumarylacetoacetate hydrolase family protein, at 2,206,825 to 2,207,709
_RS09770
DDA3937_RS09775: DDA3937_RS09775 - [citrate (pro-3S)-lyase] ligase, at 2,207,809 to 2,208,852
_RS09775
DDA3937_RS09780: DDA3937_RS09780 - citrate lyase acyl carrier protein, at 2,208,885 to 2,209,175
_RS09780
DDA3937_RS09785: DDA3937_RS09785 - citrate (pro-3S)-lyase subunit beta, at 2,209,175 to 2,210,065
_RS09785
Position (kb)
2207
2208
2209 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2207.177 kb on - strand, within DDA3937_RS09770 at 2207.503 kb on - strand, within DDA3937_RS09770 at 2207.714 kb on + strand at 2207.757 kb on + strand at 2207.757 kb on + strand at 2207.757 kb on + strand at 2207.761 kb on - strand at 2207.761 kb on - strand at 2207.761 kb on - strand at 2207.950 kb on - strand, within DDA3937_RS09775 at 2207.988 kb on + strand, within DDA3937_RS09775 at 2209.661 kb on + strand, within DDA3937_RS09785 at 2209.661 kb on + strand at 2209.709 kb on + strand, within DDA3937_RS09785 at 2209.709 kb on + strand at 2209.710 kb on - strand, within DDA3937_RS09785 at 2209.710 kb on - strand, within DDA3937_RS09785 at 2209.773 kb on - strand, within DDA3937_RS09785
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 2,207,177 - DDA3937_RS09770 0.40 -1.0 2,207,503 - DDA3937_RS09770 0.77 -2.0 2,207,714 + -0.6 2,207,757 + -2.1 2,207,757 + -1.9 2,207,757 + -0.7 2,207,761 - -1.2 2,207,761 - -0.5 2,207,761 - -1.9 2,207,950 - DDA3937_RS09775 0.14 -3.5 2,207,988 + DDA3937_RS09775 0.17 -0.7 2,209,661 + DDA3937_RS09785 0.55 +0.8 2,209,661 + -0.7 2,209,709 + DDA3937_RS09785 0.60 -0.6 2,209,709 + +0.8 2,209,710 - DDA3937_RS09785 0.60 +2.3 2,209,710 - DDA3937_RS09785 0.60 -0.7 2,209,773 - DDA3937_RS09785 0.67 +0.4
Or see this region's nucleotide sequence