Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09775

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS09770 and DDA3937_RS09775 are separated by 99 nucleotidesDDA3937_RS09775 and DDA3937_RS09780 are separated by 32 nucleotidesDDA3937_RS09780 and DDA3937_RS09785 overlap by 1 nucleotides DDA3937_RS09770: DDA3937_RS09770 - fumarylacetoacetate hydrolase family protein, at 2,206,825 to 2,207,709 _RS09770 DDA3937_RS09775: DDA3937_RS09775 - [citrate (pro-3S)-lyase] ligase, at 2,207,809 to 2,208,852 _RS09775 DDA3937_RS09780: DDA3937_RS09780 - citrate lyase acyl carrier protein, at 2,208,885 to 2,209,175 _RS09780 DDA3937_RS09785: DDA3937_RS09785 - citrate (pro-3S)-lyase subunit beta, at 2,209,175 to 2,210,065 _RS09785 Position (kb) 2207 2208 2209Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2207.177 kb on - strand, within DDA3937_RS09770at 2207.503 kb on - strand, within DDA3937_RS09770at 2207.714 kb on + strandat 2207.757 kb on + strandat 2207.757 kb on + strandat 2207.757 kb on + strandat 2207.761 kb on - strandat 2207.761 kb on - strandat 2207.761 kb on - strandat 2207.950 kb on - strand, within DDA3937_RS09775at 2207.988 kb on + strand, within DDA3937_RS09775at 2209.661 kb on + strand, within DDA3937_RS09785at 2209.661 kb on + strandat 2209.709 kb on + strand, within DDA3937_RS09785at 2209.709 kb on + strandat 2209.710 kb on - strand, within DDA3937_RS09785at 2209.710 kb on - strand, within DDA3937_RS09785at 2209.773 kb on - strand, within DDA3937_RS09785

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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2,207,177 - DDA3937_RS09770 0.40 -1.0
2,207,503 - DDA3937_RS09770 0.77 -2.0
2,207,714 + -0.6
2,207,757 + -2.1
2,207,757 + -1.9
2,207,757 + -0.7
2,207,761 - -1.2
2,207,761 - -0.5
2,207,761 - -1.9
2,207,950 - DDA3937_RS09775 0.14 -3.5
2,207,988 + DDA3937_RS09775 0.17 -0.7
2,209,661 + DDA3937_RS09785 0.55 +0.8
2,209,661 + -0.7
2,209,709 + DDA3937_RS09785 0.60 -0.6
2,209,709 + +0.8
2,209,710 - DDA3937_RS09785 0.60 +2.3
2,209,710 - DDA3937_RS09785 0.60 -0.7
2,209,773 - DDA3937_RS09785 0.67 +0.4

Or see this region's nucleotide sequence