Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08300

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS08295 and DDA3937_RS08300 are separated by 90 nucleotidesDDA3937_RS08300 and DDA3937_RS08305 are separated by 381 nucleotides DDA3937_RS08295: DDA3937_RS08295 - alpha/beta hydrolase, at 1,875,378 to 1,876,295 _RS08295 DDA3937_RS08300: DDA3937_RS08300 - ABATE domain-containing protein, at 1,876,386 to 1,876,961 _RS08300 DDA3937_RS08305: DDA3937_RS08305 - TetR/AcrR family transcriptional regulator, at 1,877,343 to 1,877,909 _RS08305 Position (kb) 1876 1877Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1875.429 kb on + strandat 1875.430 kb on - strandat 1875.430 kb on - strandat 1875.472 kb on + strand, within DDA3937_RS08295at 1875.472 kb on + strand, within DDA3937_RS08295at 1875.472 kb on + strand, within DDA3937_RS08295at 1875.472 kb on + strand, within DDA3937_RS08295at 1875.473 kb on - strand, within DDA3937_RS08295at 1875.473 kb on - strand, within DDA3937_RS08295at 1875.473 kb on - strand, within DDA3937_RS08295at 1875.481 kb on - strand, within DDA3937_RS08295at 1875.607 kb on + strand, within DDA3937_RS08295at 1875.607 kb on + strand, within DDA3937_RS08295at 1875.607 kb on + strand, within DDA3937_RS08295at 1875.607 kb on + strand, within DDA3937_RS08295at 1875.607 kb on + strand, within DDA3937_RS08295at 1875.608 kb on - strand, within DDA3937_RS08295at 1875.608 kb on - strand, within DDA3937_RS08295at 1875.608 kb on - strand, within DDA3937_RS08295at 1875.608 kb on - strand, within DDA3937_RS08295at 1875.608 kb on - strand, within DDA3937_RS08295at 1875.608 kb on - strand, within DDA3937_RS08295at 1875.672 kb on + strand, within DDA3937_RS08295at 1875.672 kb on + strand, within DDA3937_RS08295at 1875.672 kb on + strand, within DDA3937_RS08295at 1875.672 kb on + strand, within DDA3937_RS08295at 1875.673 kb on - strand, within DDA3937_RS08295at 1875.673 kb on - strand, within DDA3937_RS08295at 1875.673 kb on - strand, within DDA3937_RS08295at 1875.676 kb on - strand, within DDA3937_RS08295at 1875.730 kb on - strand, within DDA3937_RS08295at 1875.742 kb on + strand, within DDA3937_RS08295at 1875.817 kb on + strand, within DDA3937_RS08295at 1875.818 kb on - strand, within DDA3937_RS08295at 1875.818 kb on - strand, within DDA3937_RS08295at 1875.818 kb on - strand, within DDA3937_RS08295at 1875.818 kb on - strand, within DDA3937_RS08295at 1875.827 kb on + strand, within DDA3937_RS08295at 1875.940 kb on + strand, within DDA3937_RS08295at 1875.962 kb on - strand, within DDA3937_RS08295at 1875.962 kb on - strand, within DDA3937_RS08295at 1875.962 kb on - strand, within DDA3937_RS08295at 1876.022 kb on + strand, within DDA3937_RS08295at 1876.023 kb on - strand, within DDA3937_RS08295at 1876.023 kb on - strand, within DDA3937_RS08295at 1876.023 kb on - strand, within DDA3937_RS08295at 1876.024 kb on + strand, within DDA3937_RS08295at 1876.024 kb on + strand, within DDA3937_RS08295at 1876.024 kb on + strand, within DDA3937_RS08295at 1876.024 kb on + strand, within DDA3937_RS08295at 1876.024 kb on + strand, within DDA3937_RS08295at 1876.024 kb on + strand, within DDA3937_RS08295at 1876.024 kb on + strand, within DDA3937_RS08295at 1876.025 kb on - strand, within DDA3937_RS08295at 1876.025 kb on - strand, within DDA3937_RS08295at 1876.025 kb on - strand, within DDA3937_RS08295at 1876.025 kb on - strand, within DDA3937_RS08295at 1876.025 kb on - strand, within DDA3937_RS08295at 1876.030 kb on + strand, within DDA3937_RS08295at 1876.030 kb on + strand, within DDA3937_RS08295at 1876.030 kb on + strand, within DDA3937_RS08295at 1876.031 kb on - strand, within DDA3937_RS08295at 1876.084 kb on - strand, within DDA3937_RS08295at 1876.115 kb on + strand, within DDA3937_RS08295at 1876.116 kb on - strand, within DDA3937_RS08295at 1876.116 kb on - strand, within DDA3937_RS08295at 1876.130 kb on + strand, within DDA3937_RS08295at 1876.130 kb on + strand, within DDA3937_RS08295at 1876.130 kb on + strand, within DDA3937_RS08295at 1876.131 kb on - strand, within DDA3937_RS08295at 1876.131 kb on - strand, within DDA3937_RS08295at 1876.131 kb on - strand, within DDA3937_RS08295at 1876.226 kb on + strandat 1876.226 kb on + strandat 1876.227 kb on - strandat 1876.227 kb on - strandat 1876.259 kb on + strandat 1876.259 kb on + strandat 1876.259 kb on + strandat 1876.260 kb on - strandat 1876.260 kb on - strandat 1876.260 kb on - strandat 1876.272 kb on + strandat 1876.272 kb on + strandat 1876.273 kb on - strandat 1876.295 kb on + strandat 1876.295 kb on + strandat 1876.295 kb on + strandat 1876.296 kb on - strandat 1876.461 kb on + strand, within DDA3937_RS08300at 1876.625 kb on + strand, within DDA3937_RS08300at 1876.654 kb on + strand, within DDA3937_RS08300at 1876.654 kb on + strand, within DDA3937_RS08300at 1876.654 kb on + strand, within DDA3937_RS08300at 1876.658 kb on + strand, within DDA3937_RS08300at 1876.658 kb on + strand, within DDA3937_RS08300at 1876.666 kb on + strand, within DDA3937_RS08300at 1876.666 kb on + strand, within DDA3937_RS08300at 1876.666 kb on + strand, within DDA3937_RS08300at 1876.666 kb on + strand, within DDA3937_RS08300at 1876.666 kb on + strand, within DDA3937_RS08300at 1876.667 kb on - strand, within DDA3937_RS08300at 1876.667 kb on - strand, within DDA3937_RS08300at 1876.802 kb on + strand, within DDA3937_RS08300at 1876.802 kb on + strand, within DDA3937_RS08300at 1876.821 kb on + strand, within DDA3937_RS08300at 1876.822 kb on - strand, within DDA3937_RS08300at 1876.822 kb on - strand, within DDA3937_RS08300at 1876.822 kb on - strand, within DDA3937_RS08300at 1876.845 kb on - strand, within DDA3937_RS08300at 1876.845 kb on - strand, within DDA3937_RS08300at 1876.850 kb on + strand, within DDA3937_RS08300at 1876.850 kb on + strand, within DDA3937_RS08300at 1876.850 kb on + strand, within DDA3937_RS08300at 1876.851 kb on - strand, within DDA3937_RS08300at 1876.851 kb on - strand, within DDA3937_RS08300at 1876.875 kb on - strand, within DDA3937_RS08300at 1876.922 kb on + strandat 1876.923 kb on - strandat 1876.923 kb on - strandat 1877.059 kb on + strandat 1877.059 kb on + strandat 1877.060 kb on - strandat 1877.082 kb on + strandat 1877.091 kb on + strandat 1877.091 kb on + strandat 1877.160 kb on - strandat 1877.403 kb on + strand, within DDA3937_RS08305at 1877.403 kb on + strand, within DDA3937_RS08305at 1877.471 kb on + strand, within DDA3937_RS08305at 1877.471 kb on + strand, within DDA3937_RS08305at 1877.471 kb on + strand, within DDA3937_RS08305at 1877.475 kb on + strand, within DDA3937_RS08305at 1877.475 kb on + strand, within DDA3937_RS08305at 1877.475 kb on + strand, within DDA3937_RS08305at 1877.600 kb on + strand, within DDA3937_RS08305at 1877.600 kb on + strand, within DDA3937_RS08305at 1877.739 kb on + strand, within DDA3937_RS08305at 1877.739 kb on + strand, within DDA3937_RS08305at 1877.739 kb on + strand, within DDA3937_RS08305at 1877.739 kb on + strand, within DDA3937_RS08305at 1877.740 kb on - strand, within DDA3937_RS08305at 1877.768 kb on + strand, within DDA3937_RS08305at 1877.800 kb on + strand, within DDA3937_RS08305at 1877.800 kb on + strandat 1877.801 kb on - strand, within DDA3937_RS08305at 1877.806 kb on + strand, within DDA3937_RS08305at 1877.806 kb on + strand, within DDA3937_RS08305at 1877.806 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.828 kb on + strand, within DDA3937_RS08305at 1877.850 kb on + strand, within DDA3937_RS08305at 1877.890 kb on + strandat 1877.891 kb on - strandat 1877.930 kb on + strandat 1877.931 kb on - strandat 1877.931 kb on - strandat 1877.947 kb on + strandat 1877.948 kb on - strandat 1877.948 kb on - strandat 1877.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,875,429 + +0.1
1,875,430 - -0.5
1,875,430 - +0.6
1,875,472 + DDA3937_RS08295 0.10 +0.5
1,875,472 + DDA3937_RS08295 0.10 -1.7
1,875,472 + DDA3937_RS08295 0.10 +0.6
1,875,472 + DDA3937_RS08295 0.10 -1.2
1,875,473 - DDA3937_RS08295 0.10 +5.1
1,875,473 - DDA3937_RS08295 0.10 +0.0
1,875,473 - DDA3937_RS08295 0.10 -0.4
1,875,481 - DDA3937_RS08295 0.11 -0.2
1,875,607 + DDA3937_RS08295 0.25 +0.1
1,875,607 + DDA3937_RS08295 0.25 +0.8
1,875,607 + DDA3937_RS08295 0.25 -1.3
1,875,607 + DDA3937_RS08295 0.25 -0.7
1,875,607 + DDA3937_RS08295 0.25 -0.3
1,875,608 - DDA3937_RS08295 0.25 +0.8
1,875,608 - DDA3937_RS08295 0.25 -1.0
1,875,608 - DDA3937_RS08295 0.25 +0.4
1,875,608 - DDA3937_RS08295 0.25 +0.3
1,875,608 - DDA3937_RS08295 0.25 +1.1
1,875,608 - DDA3937_RS08295 0.25 -1.2
1,875,672 + DDA3937_RS08295 0.32 -2.2
1,875,672 + DDA3937_RS08295 0.32 +2.5
1,875,672 + DDA3937_RS08295 0.32 -0.9
1,875,672 + DDA3937_RS08295 0.32 +1.7
1,875,673 - DDA3937_RS08295 0.32 -1.5
1,875,673 - DDA3937_RS08295 0.32 +0.4
1,875,673 - DDA3937_RS08295 0.32 -0.5
1,875,676 - DDA3937_RS08295 0.32 +0.4
1,875,730 - DDA3937_RS08295 0.38 -0.9
1,875,742 + DDA3937_RS08295 0.40 +0.8
1,875,817 + DDA3937_RS08295 0.48 -0.6
1,875,818 - DDA3937_RS08295 0.48 +0.2
1,875,818 - DDA3937_RS08295 0.48 -0.8
1,875,818 - DDA3937_RS08295 0.48 -0.9
1,875,818 - DDA3937_RS08295 0.48 +0.6
1,875,827 + DDA3937_RS08295 0.49 +0.3
1,875,940 + DDA3937_RS08295 0.61 -0.9
1,875,962 - DDA3937_RS08295 0.64 -0.5
1,875,962 - DDA3937_RS08295 0.64 +0.4
1,875,962 - DDA3937_RS08295 0.64 -0.6
1,876,022 + DDA3937_RS08295 0.70 -0.8
1,876,023 - DDA3937_RS08295 0.70 +1.6
1,876,023 - DDA3937_RS08295 0.70 -0.1
1,876,023 - DDA3937_RS08295 0.70 -1.5
1,876,024 + DDA3937_RS08295 0.70 -0.4
1,876,024 + DDA3937_RS08295 0.70 +0.5
1,876,024 + DDA3937_RS08295 0.70 -1.5
1,876,024 + DDA3937_RS08295 0.70 +4.6
1,876,024 + DDA3937_RS08295 0.70 -1.4
1,876,024 + DDA3937_RS08295 0.70 -0.6
1,876,024 + DDA3937_RS08295 0.70 +3.4
1,876,025 - DDA3937_RS08295 0.70 +0.1
1,876,025 - DDA3937_RS08295 0.70 +3.3
1,876,025 - DDA3937_RS08295 0.70 -0.8
1,876,025 - DDA3937_RS08295 0.70 -1.5
1,876,025 - DDA3937_RS08295 0.70 -1.1
1,876,030 + DDA3937_RS08295 0.71 +0.4
1,876,030 + DDA3937_RS08295 0.71 -0.6
1,876,030 + DDA3937_RS08295 0.71 -1.0
1,876,031 - DDA3937_RS08295 0.71 -0.3
1,876,084 - DDA3937_RS08295 0.77 -0.3
1,876,115 + DDA3937_RS08295 0.80 +0.0
1,876,116 - DDA3937_RS08295 0.80 -1.0
1,876,116 - DDA3937_RS08295 0.80 -1.8
1,876,130 + DDA3937_RS08295 0.82 -1.1
1,876,130 + DDA3937_RS08295 0.82 -1.4
1,876,130 + DDA3937_RS08295 0.82 -0.2
1,876,131 - DDA3937_RS08295 0.82 +0.4
1,876,131 - DDA3937_RS08295 0.82 +0.4
1,876,131 - DDA3937_RS08295 0.82 -2.3
1,876,226 + +0.7
1,876,226 + -1.5
1,876,227 - -1.9
1,876,227 - +0.8
1,876,259 + -0.0
1,876,259 + -2.5
1,876,259 + -0.4
1,876,260 - +5.3
1,876,260 - -1.3
1,876,260 - +0.1
1,876,272 + +0.3
1,876,272 + -0.2
1,876,273 - -0.4
1,876,295 + -1.6
1,876,295 + -0.6
1,876,295 + +5.4
1,876,296 - -1.1
1,876,461 + DDA3937_RS08300 0.13 -0.5
1,876,625 + DDA3937_RS08300 0.41 +1.9
1,876,654 + DDA3937_RS08300 0.47 +5.0
1,876,654 + DDA3937_RS08300 0.47 -0.0
1,876,654 + DDA3937_RS08300 0.47 +1.7
1,876,658 + DDA3937_RS08300 0.47 +0.5
1,876,658 + DDA3937_RS08300 0.47 -0.5
1,876,666 + DDA3937_RS08300 0.49 +0.0
1,876,666 + DDA3937_RS08300 0.49 +1.2
1,876,666 + DDA3937_RS08300 0.49 -0.3
1,876,666 + DDA3937_RS08300 0.49 +0.3
1,876,666 + DDA3937_RS08300 0.49 +2.3
1,876,667 - DDA3937_RS08300 0.49 +1.9
1,876,667 - DDA3937_RS08300 0.49 -2.3
1,876,802 + DDA3937_RS08300 0.72 -0.2
1,876,802 + DDA3937_RS08300 0.72 +0.2
1,876,821 + DDA3937_RS08300 0.76 -1.2
1,876,822 - DDA3937_RS08300 0.76 -1.7
1,876,822 - DDA3937_RS08300 0.76 +3.3
1,876,822 - DDA3937_RS08300 0.76 +0.5
1,876,845 - DDA3937_RS08300 0.80 -0.1
1,876,845 - DDA3937_RS08300 0.80 +1.4
1,876,850 + DDA3937_RS08300 0.81 -2.8
1,876,850 + DDA3937_RS08300 0.81 -1.2
1,876,850 + DDA3937_RS08300 0.81 +3.3
1,876,851 - DDA3937_RS08300 0.81 -0.5
1,876,851 - DDA3937_RS08300 0.81 -0.1
1,876,875 - DDA3937_RS08300 0.85 +0.7
1,876,922 + -0.5
1,876,923 - +0.3
1,876,923 - +1.7
1,877,059 + +0.7
1,877,059 + +0.5
1,877,060 - -1.1
1,877,082 + -0.3
1,877,091 + -0.0
1,877,091 + +1.9
1,877,160 - -0.1
1,877,403 + DDA3937_RS08305 0.11 -0.3
1,877,403 + DDA3937_RS08305 0.11 +0.4
1,877,471 + DDA3937_RS08305 0.23 -0.2
1,877,471 + DDA3937_RS08305 0.23 +3.0
1,877,471 + DDA3937_RS08305 0.23 +0.1
1,877,475 + DDA3937_RS08305 0.23 -1.3
1,877,475 + DDA3937_RS08305 0.23 -0.0
1,877,475 + DDA3937_RS08305 0.23 +1.1
1,877,600 + DDA3937_RS08305 0.45 +0.1
1,877,600 + DDA3937_RS08305 0.45 +0.7
1,877,739 + DDA3937_RS08305 0.70 +2.9
1,877,739 + DDA3937_RS08305 0.70 -0.2
1,877,739 + DDA3937_RS08305 0.70 -0.6
1,877,739 + DDA3937_RS08305 0.70 +1.7
1,877,740 - DDA3937_RS08305 0.70 +0.1
1,877,768 + DDA3937_RS08305 0.75 -0.6
1,877,800 + DDA3937_RS08305 0.81 -0.3
1,877,800 + +0.7
1,877,801 - DDA3937_RS08305 0.81 +0.6
1,877,806 + DDA3937_RS08305 0.82 -1.8
1,877,806 + DDA3937_RS08305 0.82 +0.1
1,877,806 + DDA3937_RS08305 0.82 -0.6
1,877,828 + DDA3937_RS08305 0.86 -0.9
1,877,828 + DDA3937_RS08305 0.86 +0.9
1,877,828 + DDA3937_RS08305 0.86 +0.6
1,877,828 + DDA3937_RS08305 0.86 -0.6
1,877,828 + DDA3937_RS08305 0.86 +1.3
1,877,828 + DDA3937_RS08305 0.86 +0.7
1,877,828 + DDA3937_RS08305 0.86 +0.1
1,877,850 + DDA3937_RS08305 0.89 -1.3
1,877,890 + -0.1
1,877,891 - +0.4
1,877,930 + -0.5
1,877,931 - -0.3
1,877,931 - -0.6
1,877,947 + +0.4
1,877,948 - -1.5
1,877,948 - +3.1
1,877,955 + +0.1

Or see this region's nucleotide sequence