Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08190

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,853,460	+		DDA3937_RS08185	0.28	+0.1
1,853,461	-				+2.7
1,853,461	-		DDA3937_RS08185	0.28	-0.5
1,853,573	+		DDA3937_RS08185	0.39	+0.6
1,853,574	-		DDA3937_RS08185	0.39	+7.7
1,853,619	+		DDA3937_RS08185	0.43	-0.4
1,853,619	+		DDA3937_RS08185	0.43	-1.3
1,853,619	+		DDA3937_RS08185	0.43	+1.0
1,853,619	+		DDA3937_RS08185	0.43	-1.4
1,853,619	+		DDA3937_RS08185	0.43	+0.7
1,853,620	-		DDA3937_RS08185	0.43	+0.1
1,853,620	-		DDA3937_RS08185	0.43	+0.3
1,853,620	-		DDA3937_RS08185	0.43	-2.3
1,853,620	-		DDA3937_RS08185	0.43	+1.1
1,853,620	-		DDA3937_RS08185	0.43	-0.4
1,853,620	-		DDA3937_RS08185	0.43	-0.7
1,853,620	-		DDA3937_RS08185	0.43	+0.5
1,853,620	-		DDA3937_RS08185	0.43	-1.2
1,853,623	-		DDA3937_RS08185	0.43	+0.4
1,853,629	+		DDA3937_RS08185	0.44	-0.2
1,853,630	-		DDA3937_RS08185	0.44	+0.1
1,853,652	+		DDA3937_RS08185	0.46	-0.4
1,853,652	+		DDA3937_RS08185	0.46	-0.8
1,853,652	+		DDA3937_RS08185	0.46	+0.6
1,853,652	+		DDA3937_RS08185	0.46	-1.2
1,853,653	-		DDA3937_RS08185	0.46	+0.1
1,853,653	-				-0.9
1,853,653	-		DDA3937_RS08185	0.46	+0.5
1,853,653	-		DDA3937_RS08185	0.46	+0.1
1,853,729	+		DDA3937_RS08185	0.53	+1.7
1,853,729	+		DDA3937_RS08185	0.53	-0.6
1,853,730	-		DDA3937_RS08185	0.53	-0.0
1,853,730	-		DDA3937_RS08185	0.53	-0.3
1,853,730	-		DDA3937_RS08185	0.53	-0.8
1,853,730	-		DDA3937_RS08185	0.53	+0.7
1,853,730	-		DDA3937_RS08185	0.53	-0.9
1,853,730	-		DDA3937_RS08185	0.53	+1.4
1,853,730	-		DDA3937_RS08185	0.53	-1.1
1,853,860	+		DDA3937_RS08185	0.65	+0.3
1,853,862	+				+1.7
1,853,862	+		DDA3937_RS08185	0.65	-0.3
1,853,890	-		DDA3937_RS08185	0.68	-1.0
1,853,890	-		DDA3937_RS08185	0.68	-1.0
1,853,916	+		DDA3937_RS08185	0.70	-1.1
1,853,916	+		DDA3937_RS08185	0.70	-0.6
1,853,917	-		DDA3937_RS08185	0.70	-1.3
1,854,003	-		DDA3937_RS08185	0.78	-1.2
1,854,003	-		DDA3937_RS08185	0.78	-1.7
1,854,003	-		DDA3937_RS08185	0.78	-0.4
1,854,006	+		DDA3937_RS08185	0.78	-0.1
1,854,006	+		DDA3937_RS08185	0.78	+0.7
1,854,006	+		DDA3937_RS08185	0.78	-0.0
1,854,006	+		DDA3937_RS08185	0.78	-0.6
1,854,007	-		DDA3937_RS08185	0.78	-1.6
1,854,007	-		DDA3937_RS08185	0.78	-1.4
1,854,007	-		DDA3937_RS08185	0.78	+0.1
1,854,092	-		DDA3937_RS08185	0.86	-1.9
1,854,177	-				-1.6
1,854,177	-				-0.6
1,854,193	+				-0.2
1,854,248	+				-1.2
1,854,249	-				-1.3
1,854,249	-				-0.7
1,854,260	+				-1.9
1,854,262	+				-2.4
1,854,263	-				-1.2
1,854,263	-				+1.1
1,854,282	+				-0.3
1,854,282	+				+0.1
1,854,321	+				-0.2
1,854,322	-				-1.2
1,854,322	-				-0.6
1,854,322	-				-1.3
1,854,329	+				-1.7
1,854,329	+				-1.7
1,854,330	-				-1.1
1,854,330	-				+1.0
1,854,330	-				-0.1
1,854,335	+				-1.9
1,854,336	-				-1.9
1,854,364	+				+0.1
1,854,381	+				-0.6
1,854,424	-				+0.1
1,854,461	+				-0.3
1,854,461	+				-1.1
1,854,462	-				-0.0
1,854,637	-		DDA3937_RS08190	0.22	+0.1
1,854,637	-		DDA3937_RS08190	0.22	-1.3
1,854,659	+		DDA3937_RS08190	0.24	+0.4
1,854,660	-				+1.1
1,854,737	-		DDA3937_RS08190	0.31	-1.1
1,854,737	-		DDA3937_RS08190	0.31	+0.2
1,854,737	-		DDA3937_RS08190	0.31	-0.9
1,854,737	-		DDA3937_RS08190	0.31	-1.9
1,854,737	-		DDA3937_RS08190	0.31	+0.1
1,854,737	-		DDA3937_RS08190	0.31	+0.1
1,854,737	-		DDA3937_RS08190	0.31	+0.7
1,854,813	+		DDA3937_RS08190	0.38	+1.1
1,854,918	+		DDA3937_RS08190	0.47	+0.1
1,854,918	+		DDA3937_RS08190	0.47	+1.2
1,854,918	+		DDA3937_RS08190	0.47	+0.6
1,854,918	+		DDA3937_RS08190	0.47	+0.7
1,854,919	-		DDA3937_RS08190	0.47	-0.2
1,854,919	-		DDA3937_RS08190	0.47	+1.1
1,854,919	-		DDA3937_RS08190	0.47	-1.6
1,854,919	-		DDA3937_RS08190	0.47	+2.3
1,854,919	-		DDA3937_RS08190	0.47	-0.7
1,854,957	+		DDA3937_RS08190	0.50	+0.1
1,854,957	+		DDA3937_RS08190	0.50	-1.1
1,854,958	-		DDA3937_RS08190	0.50	-0.4
1,854,958	-		DDA3937_RS08190	0.50	-3.0
1,854,966	+		DDA3937_RS08190	0.51	-1.1
1,854,966	+		DDA3937_RS08190	0.51	+0.3
1,854,966	+		DDA3937_RS08190	0.51	-0.1
1,855,307	-		DDA3937_RS08190	0.81	+2.4
1,855,417	-				-1.6
1,855,435	+				+1.7
1,855,633	+				-1.0
1,855,634	-				-1.0
1,855,720	+				-0.6
1,855,720	+				+0.7
1,855,720	+				-0.7
1,855,721	-				-1.4
1,855,721	-				+3.5
1,855,731	+				-1.3
1,855,732	-				-0.9
1,855,732	-				-1.0
1,855,732	-				-0.6
1,855,788	+				-2.9
1,855,789	-				-1.4
1,855,844	+				-0.2
1,855,844	+				-1.0
1,855,844	+				-1.4
1,855,980	+				+0.1
1,855,981	-		DDA3937_RS08195	0.16	-0.8
1,856,056	+		DDA3937_RS08195	0.24	+0.7
1,856,056	+		DDA3937_RS08195	0.24	-0.0
1,856,057	-		DDA3937_RS08195	0.24	+1.3
1,856,057	-		DDA3937_RS08195	0.24	-0.3
1,856,062	+		DDA3937_RS08195	0.25	-1.1
1,856,062	+		DDA3937_RS08195	0.25	-0.9
1,856,062	+		DDA3937_RS08195	0.25	-2.0
1,856,062	+		DDA3937_RS08195	0.25	+0.8
1,856,062	+		DDA3937_RS08195	0.25	-0.6
1,856,062	+				+1.7
1,856,062	+		DDA3937_RS08195	0.25	-0.9
1,856,062	+		DDA3937_RS08195	0.25	-0.2
1,856,062	+		DDA3937_RS08195	0.25	+0.1
1,856,063	-		DDA3937_RS08195	0.25	-1.3
1,856,063	-		DDA3937_RS08195	0.25	-1.6
1,856,063	-		DDA3937_RS08195	0.25	+0.4
1,856,064	+		DDA3937_RS08195	0.25	-0.0
1,856,064	+		DDA3937_RS08195	0.25	-0.1
1,856,064	+		DDA3937_RS08195	0.25	-2.4
1,856,065	-		DDA3937_RS08195	0.25	+0.7
1,856,253	+		DDA3937_RS08195	0.45	+2.3
1,856,464	+		DDA3937_RS08195	0.66	+0.1
1,856,464	+		DDA3937_RS08195	0.66	-1.2
1,856,465	-		DDA3937_RS08195	0.67	+0.2
1,856,501	-		DDA3937_RS08195	0.70	-0.8
1,856,501	-		DDA3937_RS08195	0.70	-1.3