Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07925

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07915 and DDA3937_RS07920 are separated by 12 nucleotidesDDA3937_RS07920 and DDA3937_RS07925 are separated by 2 nucleotidesDDA3937_RS07925 and DDA3937_RS07930 are separated by 13 nucleotides DDA3937_RS07915: DDA3937_RS07915 - ABC transporter permease, at 1,793,297 to 1,794,883 _RS07915 DDA3937_RS07920: DDA3937_RS07920 - biopolymer transporter ExbD, at 1,794,896 to 1,795,297 _RS07920 DDA3937_RS07925: DDA3937_RS07925 - MotA/TolQ/ExbB proton channel family protein, at 1,795,300 to 1,795,998 _RS07925 DDA3937_RS07930: DDA3937_RS07930 - TonB family protein, at 1,796,012 to 1,796,869 _RS07930 Position (kb) 1795 1796Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1794.306 kb on + strand, within DDA3937_RS07915at 1794.339 kb on - strand, within DDA3937_RS07915at 1794.367 kb on + strand, within DDA3937_RS07915at 1794.381 kb on + strand, within DDA3937_RS07915at 1794.418 kb on + strand, within DDA3937_RS07915at 1794.554 kb on - strand, within DDA3937_RS07915at 1794.750 kb on + strandat 1794.750 kb on + strandat 1794.751 kb on - strandat 1794.902 kb on - strandat 1794.972 kb on + strand, within DDA3937_RS07920at 1794.973 kb on - strand, within DDA3937_RS07920at 1794.973 kb on - strand, within DDA3937_RS07920at 1795.301 kb on + strandat 1795.301 kb on + strandat 1795.301 kb on + strandat 1795.301 kb on + strandat 1795.301 kb on + strandat 1795.302 kb on - strandat 1795.302 kb on - strandat 1795.302 kb on - strandat 1795.302 kb on - strandat 1795.302 kb on - strandat 1795.302 kb on - strandat 1795.302 kb on - strandat 1795.302 kb on - strandat 1795.388 kb on + strand, within DDA3937_RS07925at 1795.388 kb on + strand, within DDA3937_RS07925at 1795.389 kb on - strand, within DDA3937_RS07925at 1795.389 kb on - strand, within DDA3937_RS07925at 1795.389 kb on - strand, within DDA3937_RS07925at 1795.389 kb on - strand, within DDA3937_RS07925at 1795.392 kb on + strand, within DDA3937_RS07925at 1795.392 kb on + strand, within DDA3937_RS07925at 1795.393 kb on - strand, within DDA3937_RS07925at 1795.393 kb on - strand, within DDA3937_RS07925at 1795.454 kb on - strand, within DDA3937_RS07925at 1795.735 kb on - strand, within DDA3937_RS07925at 1795.890 kb on - strand, within DDA3937_RS07925at 1795.890 kb on - strand, within DDA3937_RS07925at 1795.890 kb on - strand, within DDA3937_RS07925at 1795.983 kb on + strandat 1795.983 kb on + strandat 1795.983 kb on + strandat 1795.984 kb on - strandat 1795.984 kb on - strandat 1795.984 kb on - strandat 1795.998 kb on + strandat 1795.998 kb on + strandat 1795.998 kb on + strandat 1795.999 kb on - strandat 1795.999 kb on - strandat 1796.002 kb on - strandat 1796.558 kb on + strand, within DDA3937_RS07930at 1796.559 kb on - strand, within DDA3937_RS07930at 1796.559 kb on - strand, within DDA3937_RS07930at 1796.685 kb on - strand, within DDA3937_RS07930at 1796.776 kb on + strand, within DDA3937_RS07930at 1796.853 kb on + strandat 1796.879 kb on - strandat 1796.961 kb on - strandat 1796.964 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,794,306 + DDA3937_RS07915 0.64 -0.0
1,794,339 - DDA3937_RS07915 0.66 -1.1
1,794,367 + DDA3937_RS07915 0.67 -2.4
1,794,381 + DDA3937_RS07915 0.68 -0.0
1,794,418 + DDA3937_RS07915 0.71 -0.6
1,794,554 - DDA3937_RS07915 0.79 -0.6
1,794,750 + -0.2
1,794,750 + +1.0
1,794,751 - -0.3
1,794,902 - -1.9
1,794,972 + DDA3937_RS07920 0.19 +1.1
1,794,973 - DDA3937_RS07920 0.19 -0.6
1,794,973 - DDA3937_RS07920 0.19 -1.1
1,795,301 + +0.3
1,795,301 + -0.5
1,795,301 + +0.7
1,795,301 + -1.1
1,795,301 + -0.1
1,795,302 - -3.4
1,795,302 - -1.3
1,795,302 - -1.5
1,795,302 - -1.5
1,795,302 - -1.1
1,795,302 - +0.5
1,795,302 - -1.1
1,795,302 - +3.7
1,795,388 + DDA3937_RS07925 0.13 -1.2
1,795,388 + DDA3937_RS07925 0.13 +1.3
1,795,389 - DDA3937_RS07925 0.13 -2.3
1,795,389 - DDA3937_RS07925 0.13 -0.7
1,795,389 - DDA3937_RS07925 0.13 -0.1
1,795,389 - DDA3937_RS07925 0.13 -0.3
1,795,392 + DDA3937_RS07925 0.13 -1.2
1,795,392 + DDA3937_RS07925 0.13 -0.7
1,795,393 - DDA3937_RS07925 0.13 +3.8
1,795,393 - DDA3937_RS07925 0.13 -1.2
1,795,454 - DDA3937_RS07925 0.22 -0.8
1,795,735 - DDA3937_RS07925 0.62 +0.7
1,795,890 - DDA3937_RS07925 0.84 +0.2
1,795,890 - DDA3937_RS07925 0.84 -1.3
1,795,890 - DDA3937_RS07925 0.84 -0.3
1,795,983 + -0.8
1,795,983 + -1.2
1,795,983 + -0.4
1,795,984 - +0.4
1,795,984 - +0.0
1,795,984 - -0.9
1,795,998 + +0.1
1,795,998 + +1.1
1,795,998 + +0.1
1,795,999 - -1.5
1,795,999 - -0.0
1,796,002 - -0.3
1,796,558 + DDA3937_RS07930 0.64 +0.2
1,796,559 - DDA3937_RS07930 0.64 -0.2
1,796,559 - DDA3937_RS07930 0.64 -1.3
1,796,685 - DDA3937_RS07930 0.78 -0.9
1,796,776 + DDA3937_RS07930 0.89 +0.5
1,796,853 + -0.1
1,796,879 - +0.1
1,796,961 - -0.0
1,796,964 + -0.3

Or see this region's nucleotide sequence