Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05935

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,335,521	+		DDA3937_RS05930	0.42	-1.9
1,335,521	+		DDA3937_RS05930	0.42	-0.4
1,335,522	-		DDA3937_RS05930	0.42	+2.4
1,335,641	+		DDA3937_RS05930	0.54	-1.2
1,335,642	-		DDA3937_RS05930	0.55	-1.5
1,335,642	-		DDA3937_RS05930	0.55	-2.3
1,335,642	-		DDA3937_RS05930	0.55	-1.7
1,335,808	+		DDA3937_RS05930	0.72	+0.3
1,335,808	+		DDA3937_RS05930	0.72	+0.8
1,335,808	+		DDA3937_RS05930	0.72	-1.1
1,335,808	+		DDA3937_RS05930	0.72	-0.6
1,335,808	+		DDA3937_RS05930	0.72	-1.9
1,335,809	-		DDA3937_RS05930	0.72	-1.4
1,335,809	-		DDA3937_RS05930	0.72	-1.2
1,335,811	+		DDA3937_RS05930	0.72	-0.6
1,335,811	+		DDA3937_RS05930	0.72	-0.2
1,335,812	-		DDA3937_RS05930	0.72	-1.0
1,335,812	-		DDA3937_RS05930	0.72	-0.1
1,336,182	+				+0.7
1,336,182	+				+0.8
1,336,182	+				-1.1
1,336,182	+				+1.0
1,336,182	+				-0.2
1,336,183	-				+0.6
1,336,183	-				+0.5
1,336,183	-				+0.1
1,336,183	-				+0.2
1,336,183	-				+2.0
1,336,276	+		DDA3937_RS05935	0.15	+0.3
1,336,276	+		DDA3937_RS05935	0.15	+0.1
1,336,317	-		DDA3937_RS05935	0.18	-0.7
1,336,317	-		DDA3937_RS05935	0.18	+0.4
1,336,396	+		DDA3937_RS05935	0.24	+0.2
1,336,397	-		DDA3937_RS05935	0.24	+1.2
1,336,397	-		DDA3937_RS05935	0.24	-1.6
1,336,577	+		DDA3937_RS05935	0.37	-0.6
1,336,578	-		DDA3937_RS05935	0.37	-0.6
1,336,734	+		DDA3937_RS05935	0.48	+1.5
1,336,735	-		DDA3937_RS05935	0.48	-0.6
1,336,735	-		DDA3937_RS05935	0.48	-0.8
1,336,735	-		DDA3937_RS05935	0.48	+1.5
1,337,213	+		DDA3937_RS05935	0.83	+1.7
1,337,213	+		DDA3937_RS05935	0.83	+0.4
1,337,213	+		DDA3937_RS05935	0.83	+0.3
1,337,213	+		DDA3937_RS05935	0.83	-1.2
1,337,213	+		DDA3937_RS05935	0.83	+0.2
1,337,213	+		DDA3937_RS05935	0.83	+0.4
1,337,213	+		DDA3937_RS05935	0.83	-1.4
1,337,213	+		DDA3937_RS05935	0.83	-0.6
1,337,213	+		DDA3937_RS05935	0.83	-0.3
1,337,214	-		DDA3937_RS05935	0.83	-0.0
1,337,214	-		DDA3937_RS05935	0.83	-0.3
1,337,214	-		DDA3937_RS05935	0.83	+0.5
1,337,214	-		DDA3937_RS05935	0.83	-1.2
1,337,214	-		DDA3937_RS05935	0.83	-0.3
1,337,218	+		DDA3937_RS05935	0.83	-0.6
1,337,218	+		DDA3937_RS05935	0.83	-0.0
1,337,218	+		DDA3937_RS05935	0.83	-0.7
1,337,218	+		DDA3937_RS05935	0.83	-0.6
1,337,218	+		DDA3937_RS05935	0.83	+4.3
1,337,218	+		DDA3937_RS05935	0.83	-1.2
1,337,218	+		DDA3937_RS05935	0.83	-1.4
1,337,218	+		DDA3937_RS05935	0.83	+0.4
1,337,218	+		DDA3937_RS05935	0.83	+0.4
1,337,218	+		DDA3937_RS05935	0.83	-0.9
1,337,219	-		DDA3937_RS05935	0.83	-1.4
1,337,219	-		DDA3937_RS05935	0.83	+0.4
1,337,219	-		DDA3937_RS05935	0.83	-0.4
1,337,219	-		DDA3937_RS05935	0.83	-0.9
1,337,219	-		DDA3937_RS05935	0.83	+0.1
1,337,219	-		DDA3937_RS05935	0.83	-0.7
1,337,219	-		DDA3937_RS05935	0.83	-1.0
1,337,376	+				+0.8
1,337,376	+				+2.2
1,337,376	+				+0.2
1,337,376	+				-0.6
1,337,376	+				-0.1
1,337,377	-				-1.3
1,337,377	-				-1.2
1,337,377	-				-2.3
1,337,377	-				-1.3
1,337,377	-				-0.2
1,337,553	+				-1.7
1,337,553	+				+0.8
1,337,553	+				-0.6
1,337,593	-				-1.6
1,337,621	+				-1.4
1,337,621	+				+0.6
1,337,621	+				-2.0
1,337,621	+				-1.4
1,337,621	+				-0.6
1,337,621	+				+0.3
1,337,622	-				-0.3
1,337,622	-				-2.7
1,337,622	-				+0.2
1,337,622	-				-0.9
1,337,629	-				-0.9
1,337,636	+				-0.9
1,337,636	+				-0.5
1,337,642	-				+1.0
1,337,646	+				-0.6
1,337,646	+				-1.6
1,337,647	-				-0.4
1,337,688	+				-0.0
1,337,688	+				-0.9
1,337,688	+				-1.6
1,337,688	+				-0.6
1,337,689	-				+1.0
1,337,697	+				+0.1
1,337,768	+				-2.4
1,337,768	+				+1.5
1,337,768	+				+1.0
1,337,768	+				-0.7
1,337,769	-				+1.1
1,337,769	-				-0.2
1,337,769	-				+1.7
1,337,769	-				+1.5
1,337,769	-				-1.0
1,337,769	-				-0.9
1,337,769	-				-0.9
1,337,785	+				-2.4
1,337,787	+				-1.4
1,337,787	+				+1.2
1,337,787	+				-1.7
1,337,788	-				-0.4
1,337,860	+		DDA3937_RS05940	0.12	-1.0
1,337,885	+		DDA3937_RS05940	0.17	-1.5
1,337,885	+		DDA3937_RS05940	0.17	-1.2
1,337,885	+		DDA3937_RS05940	0.17	+1.1
1,337,886	-		DDA3937_RS05940	0.17	-0.6
1,337,978	+		DDA3937_RS05940	0.34	-2.1
1,337,978	+		DDA3937_RS05940	0.34	-0.4
1,337,979	-		DDA3937_RS05940	0.34	+0.2
1,337,996	+		DDA3937_RS05940	0.37	-0.1
1,337,997	-		DDA3937_RS05940	0.38	-2.1
1,338,047	+		DDA3937_RS05940	0.47	-0.3
1,338,047	+		DDA3937_RS05940	0.47	+1.1
1,338,068	-		DDA3937_RS05940	0.51	-0.3
1,338,068	-		DDA3937_RS05940	0.51	+0.3
1,338,068	-		DDA3937_RS05940	0.51	+0.4
1,338,146	+		DDA3937_RS05940	0.65	-0.0
1,338,146	+		DDA3937_RS05940	0.65	+7.9
1,338,146	+		DDA3937_RS05940	0.65	+0.3
1,338,146	+		DDA3937_RS05940	0.65	-0.6
1,338,146	+		DDA3937_RS05940	0.65	+0.1
1,338,146	+		DDA3937_RS05940	0.65	+1.0
1,338,147	-		DDA3937_RS05940	0.65	-1.6
1,338,150	-		DDA3937_RS05940	0.66	-0.1
1,338,185	+		DDA3937_RS05940	0.72	-0.9
1,338,185	+		DDA3937_RS05940	0.72	+0.6
1,338,186	-				+0.4
1,338,254	+		DDA3937_RS05940	0.85	-0.4
1,338,254	+		DDA3937_RS05940	0.85	-0.0
1,338,255	-		DDA3937_RS05940	0.85	+1.3
1,338,255	-		DDA3937_RS05940	0.85	-0.4
1,338,255	-		DDA3937_RS05940	0.85	-0.6
1,338,255	-		DDA3937_RS05940	0.85	-0.2
1,338,256	+		DDA3937_RS05940	0.85	+0.8
1,338,256	+		DDA3937_RS05940	0.85	-0.5
1,338,257	-		DDA3937_RS05940	0.85	+1.4
1,338,261	-		DDA3937_RS05940	0.86	-2.4
1,338,311	+				+3.2
1,338,311	+				-1.4
1,338,311	+				-1.1
1,338,312	-				+1.1
1,338,312	-				+0.6
1,338,379	-				+0.6
1,338,426	-				+0.3
1,338,441	+				-0.7
1,338,441	+				-1.4