Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05640

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,258,833	+		DDA3937_RS05635	0.72	-0.9
1,258,833	+		DDA3937_RS05635	0.72	-1.0
1,258,833	+		DDA3937_RS05635	0.72	-2.5
1,258,834	-		DDA3937_RS05635	0.72	+0.1
1,259,054	+		DDA3937_RS05635	0.89	+0.3
1,259,057	+		DDA3937_RS05635	0.89	-0.7
1,259,093	-				-0.0
1,259,146	-				+1.0
1,259,218	-				-1.6
1,259,218	-				-0.2
1,259,316	+				-1.5
1,259,317	-				-0.5
1,259,317	-				-0.4
1,259,322	+				+0.4
1,259,322	+				-0.5
1,259,322	+				-0.0
1,259,322	+				+0.4
1,259,323	-				-0.2
1,259,323	-				+0.7
1,259,323	-				-0.9
1,259,325	+				+1.2
1,259,332	+				-0.3
1,259,343	-				-0.8
1,259,417	+				+0.2
1,259,417	+				-0.4
1,259,417	+				-0.3
1,259,418	-				+5.3
1,259,418	-				-1.2
1,259,418	-				-0.6
1,259,418	-				+0.2
1,259,418	-				-0.1
1,259,418	-				+0.6
1,259,457	-				-0.8
1,259,463	+				+0.4
1,259,555	+				-1.5
1,259,555	+				+1.0
1,259,556	-				-2.4
1,259,556	-				-1.5
1,259,586	+				-0.8
1,259,587	-				-0.6
1,259,587	-				-1.0
1,259,587	-				-0.6
1,259,601	-				-1.7
1,259,608	+				-0.8
1,259,608	+				-2.3
1,259,608	+				-1.0
1,259,609	-				+1.0
1,259,609	-				-0.7
1,259,609	-				+1.2
1,259,609	-				-0.3
1,259,660	+				-3.1
1,259,661	-				-0.7
1,259,661	-				-1.0
1,259,661	-				-0.5
1,259,692	+		DDA3937_RS05640	0.14	-0.6
1,259,692	+		DDA3937_RS05640	0.14	-2.0
1,259,692	+		DDA3937_RS05640	0.14	-0.8
1,259,693	-		DDA3937_RS05640	0.15	-2.1
1,259,693	-		DDA3937_RS05640	0.15	-1.2
1,259,693	-		DDA3937_RS05640	0.15	-3.6
1,259,693	-		DDA3937_RS05640	0.15	+0.4
1,259,701	+		DDA3937_RS05640	0.16	-0.0
1,259,701	+		DDA3937_RS05640	0.16	-0.7
1,259,701	+		DDA3937_RS05640	0.16	-1.0
1,259,701	+		DDA3937_RS05640	0.16	-1.5
1,259,701	+		DDA3937_RS05640	0.16	-0.8
1,259,701	+		DDA3937_RS05640	0.16	-1.5
1,259,702	-		DDA3937_RS05640	0.16	-0.0
1,259,702	-		DDA3937_RS05640	0.16	-1.3
1,259,702	-		DDA3937_RS05640	0.16	-1.6
1,259,817	+		DDA3937_RS05640	0.34	-1.0
1,259,817	+		DDA3937_RS05640	0.34	-0.1
1,259,818	-		DDA3937_RS05640	0.35	+0.7
1,259,821	+		DDA3937_RS05640	0.35	+1.0
1,259,821	+		DDA3937_RS05640	0.35	-2.5
1,259,821	+				+1.0
1,259,821	+		DDA3937_RS05640	0.35	+1.0
1,259,821	+		DDA3937_RS05640	0.35	-1.2
1,259,821	+		DDA3937_RS05640	0.35	-0.6
1,259,821	+				-0.3
1,259,821	+		DDA3937_RS05640	0.35	-0.8
1,259,822	-		DDA3937_RS05640	0.35	-0.0
1,259,822	-		DDA3937_RS05640	0.35	-0.0
1,259,822	-				+1.0
1,259,822	-		DDA3937_RS05640	0.35	-0.3
1,259,822	-		DDA3937_RS05640	0.35	-0.0
1,259,822	-		DDA3937_RS05640	0.35	-0.3
1,259,827	+		DDA3937_RS05640	0.36	+3.3
1,259,827	+		DDA3937_RS05640	0.36	-1.6
1,259,827	+		DDA3937_RS05640	0.36	-0.6
1,259,827	+		DDA3937_RS05640	0.36	-0.8
1,259,828	-		DDA3937_RS05640	0.36	-1.2
1,259,832	+		DDA3937_RS05640	0.37	-1.7
1,259,832	+		DDA3937_RS05640	0.37	-0.8
1,259,833	-		DDA3937_RS05640	0.37	-1.3
1,259,833	-		DDA3937_RS05640	0.37	-1.0
1,259,833	-		DDA3937_RS05640	0.37	-1.3
1,259,833	-		DDA3937_RS05640	0.37	-0.6
1,259,872	+		DDA3937_RS05640	0.43	-0.6
1,259,872	+		DDA3937_RS05640	0.43	-3.2
1,259,872	+		DDA3937_RS05640	0.43	-0.8
1,259,889	+		DDA3937_RS05640	0.46	+0.0
1,259,916	+		DDA3937_RS05640	0.50	-0.3
1,259,917	-		DDA3937_RS05640	0.50	-1.3
1,260,111	+		DDA3937_RS05640	0.82	-0.6
1,260,111	+		DDA3937_RS05640	0.82	-0.0
1,260,112	-		DDA3937_RS05640	0.82	+0.7
1,260,134	+		DDA3937_RS05640	0.85	-0.4
1,260,183	-				-0.3
1,260,183	-				+0.6
1,260,183	-				-0.0
1,260,183	-				+0.4
1,260,187	+				-2.1
1,260,187	+				-1.5
1,260,206	+				-2.2
1,260,206	+				-1.5
1,260,207	-				-0.1
1,260,207	-				-0.0
1,260,211	-				-0.3
1,260,211	-				-0.3
1,260,275	+				+0.8
1,260,307	+				-0.3
1,260,308	-				-0.3
1,260,308	-				-1.8
1,260,308	-				-1.5
1,260,308	-				-2.3
1,260,334	+				-2.5
1,260,334	+				+1.4
1,260,335	-				-2.3
1,260,347	+				-1.9
1,260,348	-				-0.0
1,260,393	-				-0.0
1,260,430	+				+1.0
1,260,430	+				-0.9
1,260,455	+				-0.3
1,260,455	+				-1.3
1,260,455	+				+0.2
1,260,456	-				-2.0
1,260,456	-				-2.5
1,260,456	-				-1.1
1,260,456	-				-0.8
1,260,456	-				-0.3
1,260,457	+				-1.9
1,260,457	+				-1.6
1,260,458	-				-0.0
1,260,458	-				-1.3
1,260,516	+		DDA3937_RS05645	0.13	-2.1
1,260,516	+		DDA3937_RS05645	0.13	-0.7
1,260,581	+		DDA3937_RS05645	0.18	+3.0
1,260,582	-		DDA3937_RS05645	0.18	-1.5
1,260,582	-		DDA3937_RS05645	0.18	-2.5
1,260,582	-		DDA3937_RS05645	0.18	-1.3
1,260,582	-		DDA3937_RS05645	0.18	+0.1
1,260,629	+		DDA3937_RS05645	0.22	+0.4
1,260,630	-		DDA3937_RS05645	0.22	-0.5
1,260,630	-		DDA3937_RS05645	0.22	-3.1
1,260,630	-		DDA3937_RS05645	0.22	-1.0
1,260,653	-		DDA3937_RS05645	0.24	-2.4
1,260,667	+		DDA3937_RS05645	0.25	-1.6
1,260,667	+				-0.0
1,260,667	+		DDA3937_RS05645	0.25	+0.8
1,260,667	+		DDA3937_RS05645	0.25	-0.2
1,260,667	+		DDA3937_RS05645	0.25	-1.8
1,260,668	-		DDA3937_RS05645	0.25	+0.4
1,260,668	-		DDA3937_RS05645	0.25	-1.5
1,260,670	+		DDA3937_RS05645	0.25	-0.8
1,260,670	+		DDA3937_RS05645	0.25	-0.3
1,260,670	+		DDA3937_RS05645	0.25	+1.2
1,260,670	+		DDA3937_RS05645	0.25	-1.5
1,260,671	-		DDA3937_RS05645	0.25	-1.1
1,260,671	-		DDA3937_RS05645	0.25	+0.3
1,260,671	-		DDA3937_RS05645	0.25	-0.4
1,260,671	-		DDA3937_RS05645	0.25	+0.8
1,260,671	-		DDA3937_RS05645	0.25	-2.3
1,260,671	-		DDA3937_RS05645	0.25	-0.3
1,260,671	-		DDA3937_RS05645	0.25	-1.2
1,260,671	-		DDA3937_RS05645	0.25	-1.2
1,260,671	-		DDA3937_RS05645	0.25	-0.6
1,260,674	-				-0.3
1,260,775	+		DDA3937_RS05645	0.33	-2.3
1,260,809	+		DDA3937_RS05645	0.36	-0.0
1,260,863	+		DDA3937_RS05645	0.40	+0.2
1,260,863	+		DDA3937_RS05645	0.40	-2.2
1,260,864	-		DDA3937_RS05645	0.40	-0.2
1,260,864	-		DDA3937_RS05645	0.40	-1.3
1,260,864	-		DDA3937_RS05645	0.40	-0.0
1,260,896	+		DDA3937_RS05645	0.43	-2.6
1,260,896	+		DDA3937_RS05645	0.43	+1.0
1,260,896	+		DDA3937_RS05645	0.43	-2.5
1,260,897	-		DDA3937_RS05645	0.43	-1.6
1,260,897	-		DDA3937_RS05645	0.43	-0.8
1,260,897	-		DDA3937_RS05645	0.43	-0.2
1,260,957	+		DDA3937_RS05645	0.47	-1.3
1,260,957	+		DDA3937_RS05645	0.47	-0.6
1,260,958	-		DDA3937_RS05645	0.47	-1.5
1,261,036	+		DDA3937_RS05645	0.54	-0.4
1,261,036	+		DDA3937_RS05645	0.54	-1.8
1,261,037	-				-0.0
1,261,037	-		DDA3937_RS05645	0.54	-1.1
1,261,037	-		DDA3937_RS05645	0.54	-1.3
1,261,065	+		DDA3937_RS05645	0.56	-0.3
1,261,065	+		DDA3937_RS05645	0.56	-1.4
1,261,065	+		DDA3937_RS05645	0.56	-1.3
1,261,065	+		DDA3937_RS05645	0.56	-1.3
1,261,065	+		DDA3937_RS05645	0.56	-1.0
1,261,065	+		DDA3937_RS05645	0.56	-2.1
1,261,065	+		DDA3937_RS05645	0.56	-0.7
1,261,066	-		DDA3937_RS05645	0.56	-0.0
1,261,066	-		DDA3937_RS05645	0.56	-1.3
1,261,066	-		DDA3937_RS05645	0.56	+1.2
1,261,066	-		DDA3937_RS05645	0.56	+1.5
1,261,066	-		DDA3937_RS05645	0.56	-1.8
1,261,069	+		DDA3937_RS05645	0.56	-1.0
1,261,069	+		DDA3937_RS05645	0.56	-0.0
1,261,069	+		DDA3937_RS05645	0.56	-1.2
1,261,069	+		DDA3937_RS05645	0.56	-0.5
1,261,069	+		DDA3937_RS05645	0.56	-1.2
1,261,069	+		DDA3937_RS05645	0.56	-1.5
1,261,069	+		DDA3937_RS05645	0.56	+1.0
1,261,070	-		DDA3937_RS05645	0.56	+0.4
1,261,070	-		DDA3937_RS05645	0.56	-1.0
1,261,070	-		DDA3937_RS05645	0.56	-2.8
1,261,087	+		DDA3937_RS05645	0.58	-1.0
1,261,088	-		DDA3937_RS05645	0.58	-1.6
1,261,088	-		DDA3937_RS05645	0.58	-1.7
1,261,124	-		DDA3937_RS05645	0.60	-1.5
1,261,136	-		DDA3937_RS05645	0.61	-0.6