Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04630 and DDA3937_RS04635 are separated by 159 nucleotides DDA3937_RS04635 and DDA3937_RS23045 are separated by 263 nucleotides DDA3937_RS23045 and DDA3937_RS04640 are separated by 280 nucleotides
DDA3937_RS04630: DDA3937_RS04630 - ABC transporter substrate-binding protein, at 1,020,923 to 1,022,215
_RS04630
DDA3937_RS04635: DDA3937_RS04635 - multidrug efflux MFS transporter, at 1,022,375 to 1,023,568
_RS04635
DDA3937_RS23045: DDA3937_RS23045 - stress response protein AzuC, at 1,023,832 to 1,023,975
_RS23045
DDA3937_RS04640: DDA3937_RS04640 - hypothetical protein, at 1,024,256 to 1,024,879
_RS04640
Position (kb) 1022
1023
1024 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1021.379 kb on + strand, within DDA3937_RS04630 at 1021.379 kb on + strand, within DDA3937_RS04630 at 1021.379 kb on + strand, within DDA3937_RS04630 at 1021.379 kb on + strand, within DDA3937_RS04630 at 1021.380 kb on - strand, within DDA3937_RS04630 at 1021.380 kb on - strand, within DDA3937_RS04630 at 1021.424 kb on + strand, within DDA3937_RS04630 at 1021.424 kb on + strand, within DDA3937_RS04630 at 1021.424 kb on + strand, within DDA3937_RS04630 at 1021.425 kb on - strand, within DDA3937_RS04630 at 1021.425 kb on - strand, within DDA3937_RS04630 at 1021.425 kb on - strand, within DDA3937_RS04630 at 1021.425 kb on - strand, within DDA3937_RS04630 at 1021.425 kb on - strand, within DDA3937_RS04630 at 1021.440 kb on + strand, within DDA3937_RS04630 at 1021.440 kb on + strand, within DDA3937_RS04630 at 1021.440 kb on + strand, within DDA3937_RS04630 at 1021.441 kb on - strand, within DDA3937_RS04630 at 1021.441 kb on - strand, within DDA3937_RS04630 at 1021.441 kb on - strand, within DDA3937_RS04630 at 1021.441 kb on - strand, within DDA3937_RS04630 at 1021.441 kb on - strand, within DDA3937_RS04630 at 1021.487 kb on - strand, within DDA3937_RS04630 at 1021.534 kb on + strand, within DDA3937_RS04630 at 1021.534 kb on + strand at 1021.534 kb on + strand, within DDA3937_RS04630 at 1021.539 kb on - strand, within DDA3937_RS04630 at 1021.539 kb on - strand, within DDA3937_RS04630 at 1021.554 kb on + strand, within DDA3937_RS04630 at 1021.757 kb on + strand, within DDA3937_RS04630 at 1021.763 kb on - strand, within DDA3937_RS04630 at 1021.765 kb on - strand, within DDA3937_RS04630 at 1021.953 kb on + strand, within DDA3937_RS04630 at 1021.954 kb on - strand, within DDA3937_RS04630 at 1022.233 kb on + strand at 1022.233 kb on + strand at 1022.234 kb on - strand at 1022.234 kb on - strand at 1022.234 kb on - strand at 1022.260 kb on + strand at 1022.260 kb on + strand at 1022.260 kb on + strand at 1022.260 kb on + strand at 1022.260 kb on + strand at 1022.260 kb on + strand at 1022.261 kb on - strand at 1022.261 kb on - strand at 1022.261 kb on - strand at 1022.261 kb on - strand at 1022.261 kb on - strand at 1022.261 kb on - strand at 1022.261 kb on - strand at 1022.277 kb on + strand at 1022.277 kb on + strand at 1022.278 kb on - strand at 1022.367 kb on + strand at 1022.417 kb on + strand at 1022.417 kb on + strand at 1022.417 kb on + strand at 1022.417 kb on + strand at 1022.418 kb on - strand at 1022.488 kb on + strand at 1022.523 kb on + strand, within DDA3937_RS04635 at 1022.523 kb on + strand, within DDA3937_RS04635 at 1022.523 kb on + strand, within DDA3937_RS04635 at 1022.523 kb on + strand, within DDA3937_RS04635 at 1022.524 kb on - strand, within DDA3937_RS04635 at 1022.524 kb on - strand, within DDA3937_RS04635 at 1022.524 kb on - strand, within DDA3937_RS04635 at 1022.524 kb on - strand, within DDA3937_RS04635 at 1022.524 kb on - strand, within DDA3937_RS04635 at 1022.524 kb on - strand, within DDA3937_RS04635 at 1022.539 kb on + strand, within DDA3937_RS04635 at 1022.539 kb on + strand, within DDA3937_RS04635 at 1022.540 kb on - strand, within DDA3937_RS04635 at 1022.577 kb on + strand, within DDA3937_RS04635 at 1022.577 kb on + strand, within DDA3937_RS04635 at 1022.578 kb on - strand, within DDA3937_RS04635 at 1022.578 kb on - strand, within DDA3937_RS04635 at 1022.818 kb on + strand, within DDA3937_RS04635 at 1022.830 kb on + strand, within DDA3937_RS04635 at 1022.830 kb on + strand, within DDA3937_RS04635 at 1022.831 kb on - strand, within DDA3937_RS04635 at 1022.831 kb on - strand, within DDA3937_RS04635 at 1022.998 kb on + strand, within DDA3937_RS04635 at 1023.043 kb on + strand, within DDA3937_RS04635 at 1023.043 kb on + strand, within DDA3937_RS04635 at 1023.043 kb on + strand, within DDA3937_RS04635 at 1023.043 kb on + strand, within DDA3937_RS04635 at 1023.044 kb on - strand, within DDA3937_RS04635 at 1023.044 kb on - strand, within DDA3937_RS04635 at 1023.044 kb on - strand, within DDA3937_RS04635 at 1023.225 kb on + strand, within DDA3937_RS04635 at 1023.259 kb on + strand, within DDA3937_RS04635 at 1023.293 kb on + strand, within DDA3937_RS04635 at 1023.294 kb on - strand, within DDA3937_RS04635 at 1023.294 kb on - strand, within DDA3937_RS04635 at 1023.313 kb on + strand, within DDA3937_RS04635 at 1023.313 kb on + strand, within DDA3937_RS04635 at 1023.313 kb on + strand, within DDA3937_RS04635 at 1023.314 kb on - strand, within DDA3937_RS04635 at 1023.314 kb on - strand, within DDA3937_RS04635 at 1023.474 kb on + strand at 1023.474 kb on + strand at 1023.475 kb on - strand at 1023.542 kb on + strand at 1023.582 kb on - strand at 1023.649 kb on - strand at 1023.682 kb on + strand at 1023.686 kb on + strand at 1023.765 kb on + strand at 1023.765 kb on + strand at 1023.766 kb on - strand at 1023.766 kb on - strand at 1023.931 kb on + strand, within DDA3937_RS23045 at 1023.932 kb on - strand, within DDA3937_RS23045 at 1023.973 kb on + strand at 1023.973 kb on + strand at 1023.973 kb on + strand at 1023.974 kb on - strand at 1023.974 kb on - strand at 1023.998 kb on - strand at 1023.998 kb on - strand at 1024.001 kb on + strand at 1024.002 kb on - strand at 1024.002 kb on - strand at 1024.002 kb on - strand at 1024.014 kb on - strand at 1024.040 kb on + strand at 1024.044 kb on + strand at 1024.044 kb on + strand at 1024.045 kb on - strand at 1024.045 kb on - strand at 1024.045 kb on - strand at 1024.045 kb on - strand at 1024.052 kb on + strand at 1024.052 kb on + strand at 1024.066 kb on - strand at 1024.078 kb on + strand at 1024.079 kb on - strand at 1024.141 kb on + strand at 1024.141 kb on + strand at 1024.141 kb on + strand at 1024.142 kb on - strand at 1024.142 kb on - strand at 1024.142 kb on - strand at 1024.142 kb on - strand at 1024.158 kb on - strand at 1024.160 kb on + strand at 1024.161 kb on - strand at 1024.183 kb on + strand at 1024.184 kb on - strand at 1024.184 kb on - strand at 1024.184 kb on - strand at 1024.192 kb on + strand at 1024.200 kb on + strand at 1024.200 kb on + strand at 1024.210 kb on + strand at 1024.211 kb on - strand at 1024.212 kb on - strand at 1024.216 kb on + strand at 1024.216 kb on + strand at 1024.216 kb on + strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.217 kb on - strand at 1024.277 kb on + strand at 1024.277 kb on + strand at 1024.277 kb on + strand at 1024.278 kb on - strand at 1024.278 kb on - strand at 1024.278 kb on - strand at 1024.279 kb on + strand at 1024.279 kb on + strand at 1024.279 kb on + strand at 1024.279 kb on + strand at 1024.280 kb on - strand at 1024.280 kb on - strand at 1024.280 kb on - strand at 1024.280 kb on - strand at 1024.305 kb on - strand at 1024.348 kb on + strand, within DDA3937_RS04640 at 1024.349 kb on - strand, within DDA3937_RS04640 at 1024.352 kb on + strand, within DDA3937_RS04640 at 1024.352 kb on + strand, within DDA3937_RS04640 at 1024.352 kb on + strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.353 kb on - strand, within DDA3937_RS04640 at 1024.355 kb on - strand, within DDA3937_RS04640 at 1024.355 kb on - strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.386 kb on + strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.387 kb on - strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.388 kb on + strand, within DDA3937_RS04640 at 1024.389 kb on - strand, within DDA3937_RS04640 at 1024.389 kb on - strand, within DDA3937_RS04640 at 1024.389 kb on - strand, within DDA3937_RS04640 at 1024.389 kb on - strand, within DDA3937_RS04640 at 1024.419 kb on + strand, within DDA3937_RS04640 at 1024.419 kb on + strand, within DDA3937_RS04640 at 1024.420 kb on - strand, within DDA3937_RS04640 at 1024.483 kb on + strand, within DDA3937_RS04640 at 1024.484 kb on - strand, within DDA3937_RS04640 at 1024.506 kb on - strand, within DDA3937_RS04640
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 1,021,379 + DDA3937_RS04630 0.35 +0.0 1,021,379 + DDA3937_RS04630 0.35 -0.6 1,021,379 + DDA3937_RS04630 0.35 +0.5 1,021,379 + DDA3937_RS04630 0.35 -0.5 1,021,380 - DDA3937_RS04630 0.35 -1.9 1,021,380 - DDA3937_RS04630 0.35 -0.3 1,021,424 + DDA3937_RS04630 0.39 +0.2 1,021,424 + DDA3937_RS04630 0.39 -1.1 1,021,424 + DDA3937_RS04630 0.39 -0.8 1,021,425 - DDA3937_RS04630 0.39 -0.1 1,021,425 - DDA3937_RS04630 0.39 +3.3 1,021,425 - DDA3937_RS04630 0.39 -0.2 1,021,425 - DDA3937_RS04630 0.39 -1.0 1,021,425 - DDA3937_RS04630 0.39 +2.2 1,021,440 + DDA3937_RS04630 0.40 +0.6 1,021,440 + DDA3937_RS04630 0.40 +4.4 1,021,440 + DDA3937_RS04630 0.40 -1.3 1,021,441 - DDA3937_RS04630 0.40 -0.1 1,021,441 - DDA3937_RS04630 0.40 +0.1 1,021,441 - DDA3937_RS04630 0.40 -1.8 1,021,441 - DDA3937_RS04630 0.40 -1.1 1,021,441 - DDA3937_RS04630 0.40 -2.2 1,021,487 - DDA3937_RS04630 0.44 -0.2 1,021,534 + DDA3937_RS04630 0.47 -0.5 1,021,534 + +3.3 1,021,534 + DDA3937_RS04630 0.47 -1.6 1,021,539 - DDA3937_RS04630 0.48 -1.0 1,021,539 - DDA3937_RS04630 0.48 +0.1 1,021,554 + DDA3937_RS04630 0.49 -1.0 1,021,757 + DDA3937_RS04630 0.65 -1.1 1,021,763 - DDA3937_RS04630 0.65 +1.0 1,021,765 - DDA3937_RS04630 0.65 -0.4 1,021,953 + DDA3937_RS04630 0.80 -1.0 1,021,954 - DDA3937_RS04630 0.80 -0.5 1,022,233 + +1.1 1,022,233 + +0.4 1,022,234 - -0.7 1,022,234 - +0.0 1,022,234 - +0.0 1,022,260 + -1.0 1,022,260 + -0.1 1,022,260 + -0.4 1,022,260 + -0.2 1,022,260 + +1.8 1,022,260 + -0.5 1,022,261 - +0.2 1,022,261 - -1.9 1,022,261 - +1.6 1,022,261 - -0.2 1,022,261 - +0.5 1,022,261 - +2.0 1,022,261 - -1.7 1,022,277 + -0.5 1,022,277 + -0.4 1,022,278 - -1.4 1,022,367 + +2.0 1,022,417 + -1.6 1,022,417 + +0.0 1,022,417 + +0.0 1,022,417 + -0.6 1,022,418 - +0.8 1,022,488 + +0.7 1,022,523 + DDA3937_RS04635 0.12 -0.1 1,022,523 + DDA3937_RS04635 0.12 -0.2 1,022,523 + DDA3937_RS04635 0.12 -0.4 1,022,523 + DDA3937_RS04635 0.12 -1.0 1,022,524 - DDA3937_RS04635 0.12 +2.0 1,022,524 - DDA3937_RS04635 0.12 +1.5 1,022,524 - DDA3937_RS04635 0.12 +2.0 1,022,524 - DDA3937_RS04635 0.12 +0.6 1,022,524 - DDA3937_RS04635 0.12 +1.0 1,022,524 - DDA3937_RS04635 0.12 +0.0 1,022,539 + DDA3937_RS04635 0.14 +0.2 1,022,539 + DDA3937_RS04635 0.14 -1.5 1,022,540 - DDA3937_RS04635 0.14 -0.5 1,022,577 + DDA3937_RS04635 0.17 -0.2 1,022,577 + DDA3937_RS04635 0.17 -1.0 1,022,578 - DDA3937_RS04635 0.17 -0.1 1,022,578 - DDA3937_RS04635 0.17 -0.3 1,022,818 + DDA3937_RS04635 0.37 +0.0 1,022,830 + DDA3937_RS04635 0.38 -1.1 1,022,830 + DDA3937_RS04635 0.38 +2.0 1,022,831 - DDA3937_RS04635 0.38 +0.7 1,022,831 - DDA3937_RS04635 0.38 +0.6 1,022,998 + DDA3937_RS04635 0.52 +0.9 1,023,043 + DDA3937_RS04635 0.56 -0.3 1,023,043 + DDA3937_RS04635 0.56 -2.0 1,023,043 + DDA3937_RS04635 0.56 +2.6 1,023,043 + DDA3937_RS04635 0.56 +0.5 1,023,044 - DDA3937_RS04635 0.56 +0.7 1,023,044 - DDA3937_RS04635 0.56 -1.4 1,023,044 - DDA3937_RS04635 0.56 -0.8 1,023,225 + DDA3937_RS04635 0.71 -0.4 1,023,259 + DDA3937_RS04635 0.74 +0.0 1,023,293 + DDA3937_RS04635 0.77 -0.4 1,023,294 - DDA3937_RS04635 0.77 -1.0 1,023,294 - DDA3937_RS04635 0.77 +0.0 1,023,313 + DDA3937_RS04635 0.79 +0.1 1,023,313 + DDA3937_RS04635 0.79 +1.0 1,023,313 + DDA3937_RS04635 0.79 +0.1 1,023,314 - DDA3937_RS04635 0.79 -0.3 1,023,314 - DDA3937_RS04635 0.79 -1.5 1,023,474 + -1.3 1,023,474 + -1.3 1,023,475 - +0.8 1,023,542 + -0.9 1,023,582 - +1.8 1,023,649 - -0.6 1,023,682 + -1.3 1,023,686 + -0.6 1,023,765 + -1.1 1,023,765 + -0.1 1,023,766 - +1.5 1,023,766 - -0.6 1,023,931 + DDA3937_RS23045 0.69 -0.9 1,023,932 - DDA3937_RS23045 0.69 +0.0 1,023,973 + -0.6 1,023,973 + +0.1 1,023,973 + -1.4 1,023,974 - -1.4 1,023,974 - -0.8 1,023,998 - -2.3 1,023,998 - -2.2 1,024,001 + +2.6 1,024,002 - +0.0 1,024,002 - +1.4 1,024,002 - +0.2 1,024,014 - -1.6 1,024,040 + -0.9 1,024,044 + -1.4 1,024,044 + -0.7 1,024,045 - -1.3 1,024,045 - -0.6 1,024,045 - -0.8 1,024,045 - -2.5 1,024,052 + +0.8 1,024,052 + +0.2 1,024,066 - +1.8 1,024,078 + +0.8 1,024,079 - +0.4 1,024,141 + +0.5 1,024,141 + -0.9 1,024,141 + -0.6 1,024,142 - -0.2 1,024,142 - -0.4 1,024,142 - -1.1 1,024,142 - -0.3 1,024,158 - +2.5 1,024,160 + -0.9 1,024,161 - -0.8 1,024,183 + -1.1 1,024,184 - +0.3 1,024,184 - -0.0 1,024,184 - +0.4 1,024,192 + -0.3 1,024,200 + -0.3 1,024,200 + -1.9 1,024,210 + -1.6 1,024,211 - -1.4 1,024,212 - +0.0 1,024,216 + -0.6 1,024,216 + -0.8 1,024,216 + +0.7 1,024,217 - -1.3 1,024,217 - +0.6 1,024,217 - -0.2 1,024,217 - -1.2 1,024,217 - -1.0 1,024,217 - -0.7 1,024,217 - +0.8 1,024,277 + -0.3 1,024,277 + -0.8 1,024,277 + -1.3 1,024,278 - +0.0 1,024,278 - +1.6 1,024,278 - -0.8 1,024,279 + -0.3 1,024,279 + -0.3 1,024,279 + +1.0 1,024,279 + -0.7 1,024,280 - -1.0 1,024,280 - -1.1 1,024,280 - -0.7 1,024,280 - -0.1 1,024,305 - +4.5 1,024,348 + DDA3937_RS04640 0.15 -0.6 1,024,349 - DDA3937_RS04640 0.15 +0.7 1,024,352 + DDA3937_RS04640 0.15 -1.2 1,024,352 + DDA3937_RS04640 0.15 -0.8 1,024,352 + DDA3937_RS04640 0.15 -2.0 1,024,353 - DDA3937_RS04640 0.16 -0.8 1,024,353 - DDA3937_RS04640 0.16 -0.2 1,024,353 - DDA3937_RS04640 0.16 -2.4 1,024,353 - DDA3937_RS04640 0.16 -1.1 1,024,353 - DDA3937_RS04640 0.16 +0.1 1,024,353 - DDA3937_RS04640 0.16 +0.0 1,024,353 - DDA3937_RS04640 0.16 +2.8 1,024,355 - DDA3937_RS04640 0.16 -0.8 1,024,355 - DDA3937_RS04640 0.16 +3.9 1,024,386 + DDA3937_RS04640 0.21 -1.1 1,024,386 + DDA3937_RS04640 0.21 -0.5 1,024,386 + DDA3937_RS04640 0.21 -0.4 1,024,386 + DDA3937_RS04640 0.21 +1.3 1,024,386 + DDA3937_RS04640 0.21 -1.7 1,024,386 + DDA3937_RS04640 0.21 -1.4 1,024,386 + DDA3937_RS04640 0.21 -0.8 1,024,387 - DDA3937_RS04640 0.21 -0.4 1,024,387 - DDA3937_RS04640 0.21 -0.6 1,024,387 - DDA3937_RS04640 0.21 +0.4 1,024,387 - DDA3937_RS04640 0.21 +0.0 1,024,387 - DDA3937_RS04640 0.21 -2.3 1,024,387 - DDA3937_RS04640 0.21 -0.3 1,024,388 + DDA3937_RS04640 0.21 -2.2 1,024,388 + DDA3937_RS04640 0.21 +1.1 1,024,388 + DDA3937_RS04640 0.21 +0.6 1,024,388 + DDA3937_RS04640 0.21 +1.0 1,024,388 + DDA3937_RS04640 0.21 -1.4 1,024,389 - DDA3937_RS04640 0.21 +1.3 1,024,389 - DDA3937_RS04640 0.21 +0.6 1,024,389 - DDA3937_RS04640 0.21 +1.8 1,024,389 - DDA3937_RS04640 0.21 -0.4 1,024,419 + DDA3937_RS04640 0.26 +0.0 1,024,419 + DDA3937_RS04640 0.26 -0.3 1,024,420 - DDA3937_RS04640 0.26 -1.1 1,024,483 + DDA3937_RS04640 0.36 +0.2 1,024,484 - DDA3937_RS04640 0.37 -3.0 1,024,506 - DDA3937_RS04640 0.40 +0.0
Or see this region's nucleotide sequence