Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03725

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03720 and DDA3937_RS03725 are separated by 54 nucleotidesDDA3937_RS03725 and DDA3937_RS03730 are separated by 26 nucleotidesDDA3937_RS03730 and DDA3937_RS03735 are separated by 24 nucleotides DDA3937_RS03720: DDA3937_RS03720 - Gfo/Idh/MocA family oxidoreductase, at 823,050 to 824,183 _RS03720 DDA3937_RS03725: DDA3937_RS03725 - 5-dehydro-2-deoxygluconokinase, at 824,238 to 826,223 _RS03725 DDA3937_RS03730: DDA3937_RS03730 - myo-inosose-2 dehydratase, at 826,250 to 827,140 _RS03730 DDA3937_RS03735: DDA3937_RS03735 - 5-deoxy-glucuronate isomerase, at 827,165 to 827,992 _RS03735 Position (kb) 824 825 826 827Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 823.292 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.443 kb on + strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.444 kb on - strand, within DDA3937_RS03720at 823.482 kb on - strand, within DDA3937_RS03720at 823.539 kb on + strand, within DDA3937_RS03720at 823.634 kb on + strand, within DDA3937_RS03720at 823.634 kb on + strand, within DDA3937_RS03720at 823.644 kb on + strand, within DDA3937_RS03720at 823.645 kb on - strand, within DDA3937_RS03720at 823.645 kb on - strand, within DDA3937_RS03720at 823.669 kb on + strand, within DDA3937_RS03720at 823.669 kb on + strand, within DDA3937_RS03720at 823.669 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.842 kb on + strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.843 kb on - strand, within DDA3937_RS03720at 823.877 kb on + strand, within DDA3937_RS03720at 823.877 kb on + strand, within DDA3937_RS03720at 823.909 kb on - strand, within DDA3937_RS03720at 824.237 kb on + strandat 824.237 kb on + strandat 824.237 kb on + strandat 824.238 kb on - strandat 824.270 kb on + strandat 824.271 kb on - strandat 824.271 kb on - strandat 824.271 kb on - strandat 824.346 kb on + strandat 824.346 kb on + strandat 824.376 kb on + strandat 824.568 kb on + strand, within DDA3937_RS03725at 824.576 kb on + strand, within DDA3937_RS03725at 824.577 kb on - strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strandat 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.622 kb on + strand, within DDA3937_RS03725at 824.623 kb on - strand, within DDA3937_RS03725at 824.623 kb on - strand, within DDA3937_RS03725at 824.915 kb on - strand, within DDA3937_RS03725at 825.002 kb on + strand, within DDA3937_RS03725at 825.030 kb on - strand, within DDA3937_RS03725at 825.109 kb on - strand, within DDA3937_RS03725at 825.113 kb on - strand, within DDA3937_RS03725at 825.144 kb on + strand, within DDA3937_RS03725at 825.221 kb on + strand, within DDA3937_RS03725at 825.221 kb on + strand, within DDA3937_RS03725at 825.222 kb on - strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.225 kb on + strand, within DDA3937_RS03725at 825.226 kb on - strand, within DDA3937_RS03725at 825.226 kb on - strand, within DDA3937_RS03725at 825.226 kb on - strand, within DDA3937_RS03725at 825.226 kb on - strand, within DDA3937_RS03725at 825.226 kb on - strand, within DDA3937_RS03725at 825.226 kb on - strandat 825.226 kb on - strand, within DDA3937_RS03725at 825.283 kb on + strand, within DDA3937_RS03725at 825.283 kb on + strand, within DDA3937_RS03725at 825.284 kb on - strand, within DDA3937_RS03725at 825.284 kb on - strand, within DDA3937_RS03725at 825.284 kb on - strand, within DDA3937_RS03725at 825.556 kb on + strand, within DDA3937_RS03725at 825.557 kb on - strand, within DDA3937_RS03725at 825.873 kb on + strand, within DDA3937_RS03725at 825.874 kb on - strand, within DDA3937_RS03725at 825.898 kb on - strand, within DDA3937_RS03725at 825.898 kb on - strand, within DDA3937_RS03725at 825.898 kb on - strand, within DDA3937_RS03725at 825.898 kb on - strand, within DDA3937_RS03725at 825.993 kb on + strand, within DDA3937_RS03725at 825.994 kb on - strand, within DDA3937_RS03725at 826.042 kb on + strandat 826.042 kb on + strandat 826.042 kb on + strandat 826.042 kb on + strandat 826.042 kb on + strandat 826.042 kb on + strandat 826.043 kb on - strandat 826.043 kb on - strandat 826.043 kb on - strandat 826.182 kb on - strandat 826.185 kb on + strandat 826.185 kb on + strandat 826.185 kb on + strandat 826.185 kb on + strandat 826.185 kb on + strandat 826.186 kb on - strandat 826.221 kb on + strandat 826.222 kb on - strandat 826.231 kb on + strandat 826.231 kb on + strandat 826.232 kb on - strandat 826.458 kb on - strand, within DDA3937_RS03730at 826.643 kb on + strand, within DDA3937_RS03730at 826.643 kb on + strand, within DDA3937_RS03730at 826.651 kb on + strand, within DDA3937_RS03730at 826.652 kb on - strand, within DDA3937_RS03730at 826.673 kb on + strand, within DDA3937_RS03730at 826.674 kb on - strand, within DDA3937_RS03730at 826.704 kb on - strand, within DDA3937_RS03730at 826.715 kb on - strand, within DDA3937_RS03730at 826.746 kb on + strand, within DDA3937_RS03730at 826.747 kb on - strand, within DDA3937_RS03730at 826.807 kb on + strand, within DDA3937_RS03730at 826.807 kb on + strand, within DDA3937_RS03730at 826.807 kb on + strand, within DDA3937_RS03730at 826.807 kb on + strand, within DDA3937_RS03730at 826.808 kb on - strandat 826.808 kb on - strand, within DDA3937_RS03730at 826.808 kb on - strand, within DDA3937_RS03730at 826.808 kb on - strand, within DDA3937_RS03730at 826.922 kb on + strand, within DDA3937_RS03730at 826.923 kb on - strand, within DDA3937_RS03730at 826.923 kb on - strand, within DDA3937_RS03730at 826.923 kb on - strand, within DDA3937_RS03730at 827.008 kb on + strand, within DDA3937_RS03730at 827.021 kb on + strand, within DDA3937_RS03730at 827.081 kb on + strandat 827.081 kb on + strandat 827.082 kb on - strandat 827.082 kb on - strandat 827.082 kb on - strandat 827.082 kb on - strandat 827.090 kb on - strandat 827.099 kb on - strandat 827.138 kb on + strandat 827.138 kb on + strandat 827.138 kb on + strandat 827.139 kb on - strandat 827.139 kb on - strandat 827.175 kb on + strandat 827.175 kb on + strandat 827.176 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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823,292 + DDA3937_RS03720 0.21 -0.5
823,443 + DDA3937_RS03720 0.35 -1.6
823,443 + DDA3937_RS03720 0.35 -0.8
823,443 + DDA3937_RS03720 0.35 -0.6
823,443 + DDA3937_RS03720 0.35 -1.2
823,443 + DDA3937_RS03720 0.35 -0.1
823,444 - DDA3937_RS03720 0.35 -1.4
823,444 - DDA3937_RS03720 0.35 -0.6
823,444 - DDA3937_RS03720 0.35 -0.2
823,444 - DDA3937_RS03720 0.35 +0.1
823,444 - DDA3937_RS03720 0.35 +4.1
823,444 - DDA3937_RS03720 0.35 -1.0
823,482 - DDA3937_RS03720 0.38 -0.6
823,539 + DDA3937_RS03720 0.43 +0.0
823,634 + DDA3937_RS03720 0.51 -2.4
823,634 + DDA3937_RS03720 0.51 -0.7
823,644 + DDA3937_RS03720 0.52 -0.9
823,645 - DDA3937_RS03720 0.52 -1.9
823,645 - DDA3937_RS03720 0.52 +0.6
823,669 + DDA3937_RS03720 0.55 +0.6
823,669 + DDA3937_RS03720 0.55 -0.9
823,669 + DDA3937_RS03720 0.55 +0.3
823,842 + DDA3937_RS03720 0.70 -0.1
823,842 + DDA3937_RS03720 0.70 +2.1
823,842 + DDA3937_RS03720 0.70 -1.2
823,842 + DDA3937_RS03720 0.70 -0.2
823,842 + DDA3937_RS03720 0.70 +0.9
823,842 + DDA3937_RS03720 0.70 +0.7
823,842 + DDA3937_RS03720 0.70 -0.7
823,842 + DDA3937_RS03720 0.70 -0.2
823,843 - DDA3937_RS03720 0.70 -1.3
823,843 - DDA3937_RS03720 0.70 +1.3
823,843 - DDA3937_RS03720 0.70 +1.6
823,843 - DDA3937_RS03720 0.70 -0.2
823,843 - DDA3937_RS03720 0.70 +1.6
823,843 - DDA3937_RS03720 0.70 -0.7
823,877 + DDA3937_RS03720 0.73 +1.5
823,877 + DDA3937_RS03720 0.73 +1.1
823,909 - DDA3937_RS03720 0.76 -0.7
824,237 + -0.9
824,237 + -0.1
824,237 + +1.2
824,238 - -1.3
824,270 + +3.3
824,271 - -0.9
824,271 - +1.1
824,271 - -1.2
824,346 + +0.5
824,346 + +0.0
824,376 + +0.2
824,568 + DDA3937_RS03725 0.17 -0.2
824,576 + DDA3937_RS03725 0.17 -0.9
824,577 - DDA3937_RS03725 0.17 -1.3
824,622 + DDA3937_RS03725 0.19 +0.4
824,622 + DDA3937_RS03725 0.19 -0.7
824,622 + +0.6
824,622 + DDA3937_RS03725 0.19 -0.8
824,622 + DDA3937_RS03725 0.19 -0.3
824,622 + DDA3937_RS03725 0.19 -0.7
824,622 + DDA3937_RS03725 0.19 -1.4
824,623 - DDA3937_RS03725 0.19 -0.5
824,623 - DDA3937_RS03725 0.19 -1.1
824,915 - DDA3937_RS03725 0.34 -0.4
825,002 + DDA3937_RS03725 0.38 -2.6
825,030 - DDA3937_RS03725 0.40 +0.1
825,109 - DDA3937_RS03725 0.44 -2.6
825,113 - DDA3937_RS03725 0.44 +0.4
825,144 + DDA3937_RS03725 0.46 +0.0
825,221 + DDA3937_RS03725 0.49 -0.9
825,221 + DDA3937_RS03725 0.49 +0.4
825,222 - DDA3937_RS03725 0.50 -0.5
825,225 + DDA3937_RS03725 0.50 -1.2
825,225 + DDA3937_RS03725 0.50 -0.4
825,225 + DDA3937_RS03725 0.50 +0.1
825,225 + DDA3937_RS03725 0.50 +0.8
825,225 + DDA3937_RS03725 0.50 -0.9
825,225 + DDA3937_RS03725 0.50 +0.1
825,225 + DDA3937_RS03725 0.50 -0.3
825,225 + DDA3937_RS03725 0.50 -0.7
825,225 + DDA3937_RS03725 0.50 -1.0
825,225 + DDA3937_RS03725 0.50 +0.3
825,225 + DDA3937_RS03725 0.50 -0.4
825,226 - DDA3937_RS03725 0.50 -1.0
825,226 - DDA3937_RS03725 0.50 +1.1
825,226 - DDA3937_RS03725 0.50 +1.4
825,226 - DDA3937_RS03725 0.50 -1.9
825,226 - DDA3937_RS03725 0.50 -0.0
825,226 - -0.2
825,226 - DDA3937_RS03725 0.50 +1.7
825,283 + DDA3937_RS03725 0.53 -0.8
825,283 + DDA3937_RS03725 0.53 -0.8
825,284 - DDA3937_RS03725 0.53 -1.3
825,284 - DDA3937_RS03725 0.53 -0.2
825,284 - DDA3937_RS03725 0.53 -0.7
825,556 + DDA3937_RS03725 0.66 +0.7
825,557 - DDA3937_RS03725 0.66 -2.4
825,873 + DDA3937_RS03725 0.82 +0.2
825,874 - DDA3937_RS03725 0.82 +0.8
825,898 - DDA3937_RS03725 0.84 -1.1
825,898 - DDA3937_RS03725 0.84 -2.2
825,898 - DDA3937_RS03725 0.84 -2.3
825,898 - DDA3937_RS03725 0.84 +1.1
825,993 + DDA3937_RS03725 0.88 -1.3
825,994 - DDA3937_RS03725 0.88 -0.8
826,042 + -2.1
826,042 + -0.4
826,042 + -1.2
826,042 + +1.1
826,042 + +1.8
826,042 + +1.8
826,043 - -2.6
826,043 - -1.1
826,043 - +0.2
826,182 - +0.7
826,185 + -1.7
826,185 + -1.3
826,185 + +1.7
826,185 + -0.9
826,185 + -1.2
826,186 - -0.7
826,221 + -1.3
826,222 - +0.2
826,231 + -0.2
826,231 + -0.7
826,232 - -0.5
826,458 - DDA3937_RS03730 0.23 -0.4
826,643 + DDA3937_RS03730 0.44 -0.6
826,643 + DDA3937_RS03730 0.44 -2.3
826,651 + DDA3937_RS03730 0.45 +1.6
826,652 - DDA3937_RS03730 0.45 -1.2
826,673 + DDA3937_RS03730 0.47 +2.1
826,674 - DDA3937_RS03730 0.48 +0.6
826,704 - DDA3937_RS03730 0.51 -0.7
826,715 - DDA3937_RS03730 0.52 +0.6
826,746 + DDA3937_RS03730 0.56 -1.0
826,747 - DDA3937_RS03730 0.56 -1.3
826,807 + DDA3937_RS03730 0.63 -1.0
826,807 + DDA3937_RS03730 0.63 -1.4
826,807 + DDA3937_RS03730 0.63 -0.4
826,807 + DDA3937_RS03730 0.63 +0.1
826,808 - +0.1
826,808 - DDA3937_RS03730 0.63 -0.7
826,808 - DDA3937_RS03730 0.63 -1.0
826,808 - DDA3937_RS03730 0.63 -0.9
826,922 + DDA3937_RS03730 0.75 -0.0
826,923 - DDA3937_RS03730 0.76 -0.9
826,923 - DDA3937_RS03730 0.76 -0.0
826,923 - DDA3937_RS03730 0.76 +0.3
827,008 + DDA3937_RS03730 0.85 -1.2
827,021 + DDA3937_RS03730 0.87 +0.6
827,081 + -1.2
827,081 + -1.1
827,082 - -1.3
827,082 - -0.2
827,082 - +1.1
827,082 - -1.1
827,090 - -1.0
827,099 - -1.4
827,138 + -1.9
827,138 + -0.9
827,138 + +2.1
827,139 - +0.3
827,139 - +0.3
827,175 + -0.5
827,175 + -0.1
827,176 - +1.4

Or see this region's nucleotide sequence