Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02930 and DDA3937_RS02935 are separated by 178 nucleotides DDA3937_RS02935 and DDA3937_RS02940 are separated by 177 nucleotides DDA3937_RS02940 and DDA3937_RS02945 are separated by 263 nucleotides
DDA3937_RS02930: DDA3937_RS02930 - oxidoreductase, at 649,142 to 649,963
_RS02930
DDA3937_RS02935: DDA3937_RS02935 - NADP-dependent oxidoreductase, at 650,142 to 651,143
_RS02935
DDA3937_RS02940: DDA3937_RS02940 - tRNA-Ile, at 651,321 to 651,396
_RS02940
DDA3937_RS02945: DDA3937_RS02945 - RNA polymerase sigma factor RpoD, at 651,660 to 653,495
_RS02945
Position (kb) 650
651
652 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 649.142 kb on - strand at 649.153 kb on + strand at 649.153 kb on + strand at 649.154 kb on - strand at 649.154 kb on - strand at 649.202 kb on - strand at 649.229 kb on + strand, within DDA3937_RS02930 at 649.229 kb on + strand, within DDA3937_RS02930 at 649.230 kb on - strand, within DDA3937_RS02930 at 649.232 kb on - strand, within DDA3937_RS02930 at 649.232 kb on - strand, within DDA3937_RS02930 at 649.232 kb on - strand, within DDA3937_RS02930 at 649.232 kb on - strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.237 kb on - strand, within DDA3937_RS02930 at 649.237 kb on - strand, within DDA3937_RS02930 at 649.237 kb on - strand, within DDA3937_RS02930 at 649.237 kb on - strand, within DDA3937_RS02930 at 649.238 kb on + strand, within DDA3937_RS02930 at 649.238 kb on + strand, within DDA3937_RS02930 at 649.238 kb on + strand, within DDA3937_RS02930 at 649.238 kb on + strand, within DDA3937_RS02930 at 649.239 kb on - strand, within DDA3937_RS02930 at 649.239 kb on - strand, within DDA3937_RS02930 at 649.239 kb on - strand, within DDA3937_RS02930 at 649.239 kb on - strand, within DDA3937_RS02930 at 649.368 kb on + strand, within DDA3937_RS02930 at 649.369 kb on - strand, within DDA3937_RS02930 at 649.378 kb on + strand, within DDA3937_RS02930 at 649.436 kb on - strand, within DDA3937_RS02930 at 649.555 kb on - strand, within DDA3937_RS02930 at 649.578 kb on - strand, within DDA3937_RS02930 at 649.632 kb on + strand, within DDA3937_RS02930 at 649.632 kb on + strand, within DDA3937_RS02930 at 649.632 kb on + strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.674 kb on - strand, within DDA3937_RS02930 at 649.803 kb on + strand, within DDA3937_RS02930 at 649.933 kb on + strand at 649.934 kb on - strand at 649.934 kb on - strand at 650.006 kb on - strand at 650.084 kb on - strand at 650.118 kb on - strand at 650.141 kb on + strand at 650.166 kb on + strand at 650.166 kb on + strand at 650.166 kb on + strand at 650.166 kb on + strand at 650.166 kb on + strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.175 kb on - strand at 650.263 kb on + strand, within DDA3937_RS02935 at 650.263 kb on + strand, within DDA3937_RS02935 at 650.263 kb on + strand, within DDA3937_RS02935 at 650.264 kb on - strand, within DDA3937_RS02935 at 650.299 kb on + strand, within DDA3937_RS02935 at 650.375 kb on - strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.404 kb on - strand, within DDA3937_RS02935 at 650.404 kb on - strand, within DDA3937_RS02935 at 650.404 kb on - strand, within DDA3937_RS02935 at 650.404 kb on - strand, within DDA3937_RS02935 at 650.426 kb on + strand, within DDA3937_RS02935 at 650.426 kb on + strand, within DDA3937_RS02935 at 650.427 kb on - strand, within DDA3937_RS02935 at 650.427 kb on - strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.679 kb on - strand, within DDA3937_RS02935 at 650.679 kb on - strand, within DDA3937_RS02935 at 650.749 kb on + strand, within DDA3937_RS02935 at 650.749 kb on + strand, within DDA3937_RS02935 at 650.761 kb on - strand, within DDA3937_RS02935 at 650.843 kb on + strand, within DDA3937_RS02935 at 650.843 kb on + strand, within DDA3937_RS02935 at 650.844 kb on - strand, within DDA3937_RS02935 at 650.844 kb on - strand, within DDA3937_RS02935 at 650.844 kb on - strand, within DDA3937_RS02935 at 650.845 kb on + strand, within DDA3937_RS02935 at 650.846 kb on - strand, within DDA3937_RS02935 at 650.846 kb on - strand, within DDA3937_RS02935 at 650.931 kb on - strand, within DDA3937_RS02935 at 650.964 kb on + strand, within DDA3937_RS02935 at 650.979 kb on - strand, within DDA3937_RS02935 at 651.011 kb on + strand, within DDA3937_RS02935 at 651.094 kb on - strand at 651.119 kb on + strand at 651.120 kb on - strand at 651.120 kb on - strand at 651.142 kb on - strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.174 kb on + strand at 651.175 kb on - strand at 651.175 kb on - strand at 651.210 kb on + strand at 651.210 kb on + strand at 651.211 kb on - strand at 651.211 kb on - strand at 651.232 kb on - strand at 651.439 kb on - strand at 651.452 kb on + strand at 651.452 kb on + strand at 651.453 kb on - strand at 651.464 kb on - strand at 651.464 kb on - strand at 651.466 kb on - strand at 651.476 kb on + strand at 651.506 kb on + strand at 651.506 kb on + strand at 651.506 kb on + strand at 651.558 kb on + strand at 651.559 kb on - strand at 651.559 kb on - strand at 651.559 kb on - strand at 651.595 kb on + strand at 651.595 kb on + strand at 651.596 kb on - strand at 651.596 kb on - strand at 651.605 kb on - strand at 651.661 kb on + strand at 651.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 649,142 - +0.4 649,153 + -0.9 649,153 + -3.8 649,154 - +1.8 649,154 - -0.2 649,202 - +0.4 649,229 + DDA3937_RS02930 0.11 +0.2 649,229 + DDA3937_RS02930 0.11 -2.6 649,230 - DDA3937_RS02930 0.11 -0.1 649,232 - DDA3937_RS02930 0.11 -0.6 649,232 - DDA3937_RS02930 0.11 +1.6 649,232 - DDA3937_RS02930 0.11 +1.8 649,232 - DDA3937_RS02930 0.11 +0.3 649,236 + DDA3937_RS02930 0.11 -1.2 649,236 + DDA3937_RS02930 0.11 -0.1 649,236 + DDA3937_RS02930 0.11 +0.9 649,236 + DDA3937_RS02930 0.11 -1.5 649,236 + DDA3937_RS02930 0.11 +0.4 649,237 - DDA3937_RS02930 0.12 +5.0 649,237 - DDA3937_RS02930 0.12 +0.0 649,237 - DDA3937_RS02930 0.12 -1.7 649,237 - DDA3937_RS02930 0.12 -1.2 649,238 + DDA3937_RS02930 0.12 -0.3 649,238 + DDA3937_RS02930 0.12 -2.1 649,238 + DDA3937_RS02930 0.12 -2.2 649,238 + DDA3937_RS02930 0.12 -0.8 649,239 - DDA3937_RS02930 0.12 -0.1 649,239 - DDA3937_RS02930 0.12 -0.5 649,239 - DDA3937_RS02930 0.12 -0.2 649,239 - DDA3937_RS02930 0.12 -0.6 649,368 + DDA3937_RS02930 0.27 +0.8 649,369 - DDA3937_RS02930 0.28 +0.9 649,378 + DDA3937_RS02930 0.29 -1.6 649,436 - DDA3937_RS02930 0.36 +1.2 649,555 - DDA3937_RS02930 0.50 -0.2 649,578 - DDA3937_RS02930 0.53 +0.6 649,632 + DDA3937_RS02930 0.60 +0.7 649,632 + DDA3937_RS02930 0.60 -1.3 649,632 + DDA3937_RS02930 0.60 +0.4 649,633 - DDA3937_RS02930 0.60 -0.9 649,633 - DDA3937_RS02930 0.60 +1.4 649,633 - DDA3937_RS02930 0.60 -1.0 649,633 - DDA3937_RS02930 0.60 -1.1 649,633 - DDA3937_RS02930 0.60 -1.5 649,633 - DDA3937_RS02930 0.60 +1.6 649,633 - DDA3937_RS02930 0.60 +0.5 649,637 - DDA3937_RS02930 0.60 -0.5 649,637 - DDA3937_RS02930 0.60 +3.1 649,637 - DDA3937_RS02930 0.60 -0.8 649,637 - DDA3937_RS02930 0.60 +0.4 649,637 - DDA3937_RS02930 0.60 -1.3 649,674 - DDA3937_RS02930 0.65 +0.4 649,803 + DDA3937_RS02930 0.80 -1.2 649,933 + -1.2 649,934 - -2.0 649,934 - -0.8 650,006 - -0.2 650,084 - -1.5 650,118 - -2.1 650,141 + -0.8 650,166 + -0.5 650,166 + -0.1 650,166 + +0.0 650,166 + +0.7 650,166 + +0.8 650,167 - -2.1 650,167 - -1.1 650,167 - +2.1 650,167 - -0.2 650,167 - -0.2 650,167 - +1.7 650,167 - -0.8 650,167 - -1.1 650,167 - +0.9 650,167 - +2.2 650,175 - -0.6 650,263 + DDA3937_RS02935 0.12 -0.5 650,263 + DDA3937_RS02935 0.12 +0.4 650,263 + DDA3937_RS02935 0.12 -0.1 650,264 - DDA3937_RS02935 0.12 -0.0 650,299 + DDA3937_RS02935 0.16 +0.4 650,375 - DDA3937_RS02935 0.23 -1.1 650,403 + DDA3937_RS02935 0.26 -0.1 650,403 + DDA3937_RS02935 0.26 -2.0 650,403 + DDA3937_RS02935 0.26 +0.0 650,403 + DDA3937_RS02935 0.26 +1.6 650,403 + DDA3937_RS02935 0.26 -0.6 650,403 + DDA3937_RS02935 0.26 +1.2 650,403 + DDA3937_RS02935 0.26 -1.5 650,404 - DDA3937_RS02935 0.26 -0.7 650,404 - DDA3937_RS02935 0.26 -0.1 650,404 - DDA3937_RS02935 0.26 -0.9 650,404 - DDA3937_RS02935 0.26 -1.2 650,426 + DDA3937_RS02935 0.28 +2.7 650,426 + DDA3937_RS02935 0.28 -0.7 650,427 - DDA3937_RS02935 0.28 -0.8 650,427 - DDA3937_RS02935 0.28 -1.1 650,545 + DDA3937_RS02935 0.40 +0.1 650,545 + DDA3937_RS02935 0.40 -0.2 650,545 + DDA3937_RS02935 0.40 +0.4 650,545 + DDA3937_RS02935 0.40 +0.5 650,545 + DDA3937_RS02935 0.40 -0.6 650,545 + DDA3937_RS02935 0.40 +1.2 650,545 + DDA3937_RS02935 0.40 +2.2 650,546 - DDA3937_RS02935 0.40 -0.6 650,546 - DDA3937_RS02935 0.40 -0.6 650,546 - DDA3937_RS02935 0.40 +2.2 650,546 - DDA3937_RS02935 0.40 +0.5 650,546 - DDA3937_RS02935 0.40 +0.4 650,546 - DDA3937_RS02935 0.40 -0.8 650,546 - DDA3937_RS02935 0.40 +0.4 650,546 - DDA3937_RS02935 0.40 +1.2 650,679 - DDA3937_RS02935 0.54 -0.8 650,679 - DDA3937_RS02935 0.54 +2.2 650,749 + DDA3937_RS02935 0.61 +1.2 650,749 + DDA3937_RS02935 0.61 +0.5 650,761 - DDA3937_RS02935 0.62 -0.4 650,843 + DDA3937_RS02935 0.70 +0.4 650,843 + DDA3937_RS02935 0.70 +1.2 650,844 - DDA3937_RS02935 0.70 +0.9 650,844 - DDA3937_RS02935 0.70 +0.4 650,844 - DDA3937_RS02935 0.70 -1.5 650,845 + DDA3937_RS02935 0.70 -0.6 650,846 - DDA3937_RS02935 0.70 -2.8 650,846 - DDA3937_RS02935 0.70 -2.0 650,931 - DDA3937_RS02935 0.79 +0.4 650,964 + DDA3937_RS02935 0.82 -1.6 650,979 - DDA3937_RS02935 0.84 -1.5 651,011 + DDA3937_RS02935 0.87 -0.6 651,094 - +0.8 651,119 + -1.5 651,120 - +0.1 651,120 - -1.2 651,142 - +0.7 651,167 + +1.2 651,167 + -0.2 651,167 + -0.6 651,167 + -1.8 651,167 + -0.3 651,167 + -0.2 651,167 + +0.9 651,167 + +1.4 651,168 - -1.1 651,168 - -2.5 651,168 - +1.2 651,168 - -0.5 651,168 - -0.8 651,168 - -0.8 651,168 - -0.8 651,168 - -2.0 651,168 - -0.1 651,168 - -1.2 651,174 + -0.8 651,175 - +1.0 651,175 - -0.4 651,210 + -0.2 651,210 + +0.2 651,211 - +0.7 651,211 - -0.8 651,232 - -1.5 651,439 - -0.9 651,452 + +0.7 651,452 + -1.4 651,453 - -1.6 651,464 - +0.0 651,464 - +0.3 651,466 - -0.8 651,476 + -0.6 651,506 + +0.7 651,506 + -0.7 651,506 + -2.1 651,558 + -0.3 651,559 - -0.8 651,559 - +1.4 651,559 - -0.3 651,595 + +3.0 651,595 + +0.4 651,596 - +0.7 651,596 - +0.4 651,605 - -0.1 651,661 + -1.3 651,662 - -0.6
Or see this region's nucleotide sequence