Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02790

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02780 and DDA3937_RS02785 are separated by 105 nucleotidesDDA3937_RS02785 and DDA3937_RS02790 are separated by 300 nucleotidesDDA3937_RS02790 and DDA3937_RS02795 overlap by 4 nucleotidesDDA3937_RS02795 and DDA3937_RS02800 are separated by 3 nucleotidesDDA3937_RS02800 and DDA3937_RS02805 are separated by 198 nucleotides DDA3937_RS02780: DDA3937_RS02780 - glutathione S-transferase family protein, at 614,136 to 615,122 _RS02780 DDA3937_RS02785: DDA3937_RS02785 - DoxX family protein, at 615,228 to 615,623 _RS02785 DDA3937_RS02790: DDA3937_RS02790 - YqjK-like family protein, at 615,924 to 616,229 _RS02790 DDA3937_RS02795: DDA3937_RS02795 - phage holin family protein, at 616,226 to 616,624 _RS02795 DDA3937_RS02800: DDA3937_RS02800 - DUF883 domain-containing protein, at 616,628 to 616,933 _RS02800 DDA3937_RS02805: DDA3937_RS02805 - EnvZ/OmpR regulon moderator MzrA, at 617,132 to 617,482 _RS02805 Position (kb) 615 616 617Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 614.946 kb on + strand, within DDA3937_RS02780at 614.946 kb on + strand, within DDA3937_RS02780at 614.947 kb on - strand, within DDA3937_RS02780at 614.947 kb on - strand, within DDA3937_RS02780at 614.950 kb on + strand, within DDA3937_RS02780at 614.950 kb on + strand, within DDA3937_RS02780at 614.951 kb on - strand, within DDA3937_RS02780at 614.951 kb on - strand, within DDA3937_RS02780at 614.951 kb on - strand, within DDA3937_RS02780at 614.951 kb on - strand, within DDA3937_RS02780at 615.082 kb on + strandat 615.083 kb on - strandat 615.083 kb on - strandat 615.100 kb on - strandat 615.114 kb on + strandat 615.142 kb on + strandat 615.142 kb on + strandat 615.143 kb on - strandat 615.185 kb on + strandat 615.215 kb on - strandat 615.291 kb on + strand, within DDA3937_RS02785at 615.291 kb on + strand, within DDA3937_RS02785at 615.291 kb on + strand, within DDA3937_RS02785at 615.291 kb on + strand, within DDA3937_RS02785at 615.292 kb on - strand, within DDA3937_RS02785at 615.292 kb on - strand, within DDA3937_RS02785at 615.292 kb on - strand, within DDA3937_RS02785at 615.292 kb on - strand, within DDA3937_RS02785at 615.292 kb on - strand, within DDA3937_RS02785at 615.292 kb on - strand, within DDA3937_RS02785at 615.295 kb on + strand, within DDA3937_RS02785at 615.296 kb on - strand, within DDA3937_RS02785at 615.509 kb on + strand, within DDA3937_RS02785at 615.509 kb on + strand, within DDA3937_RS02785at 615.509 kb on + strand, within DDA3937_RS02785at 615.509 kb on + strand, within DDA3937_RS02785at 615.509 kb on + strand, within DDA3937_RS02785at 615.509 kb on + strand, within DDA3937_RS02785at 615.509 kb on + strand, within DDA3937_RS02785at 615.509 kb on + strand, within DDA3937_RS02785at 615.509 kb on + strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.510 kb on - strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.511 kb on + strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.512 kb on - strand, within DDA3937_RS02785at 615.513 kb on - strand, within DDA3937_RS02785at 615.529 kb on + strand, within DDA3937_RS02785at 615.529 kb on + strand, within DDA3937_RS02785at 615.530 kb on - strand, within DDA3937_RS02785at 615.564 kb on - strand, within DDA3937_RS02785at 615.628 kb on - strandat 615.638 kb on - strandat 615.638 kb on - strandat 615.693 kb on - strandat 615.693 kb on - strandat 615.721 kb on + strandat 615.721 kb on + strandat 615.721 kb on + strandat 615.721 kb on + strandat 615.721 kb on + strandat 615.722 kb on - strandat 615.722 kb on - strandat 615.722 kb on - strandat 615.722 kb on - strandat 615.724 kb on + strandat 615.725 kb on - strandat 615.768 kb on + strandat 615.824 kb on + strandat 615.824 kb on + strandat 615.839 kb on + strandat 615.840 kb on - strandat 615.840 kb on - strandat 615.863 kb on + strandat 615.954 kb on + strandat 615.955 kb on - strand, within DDA3937_RS02790at 615.966 kb on + strand, within DDA3937_RS02790at 616.044 kb on + strand, within DDA3937_RS02790at 616.385 kb on + strand, within DDA3937_RS02795at 616.385 kb on + strand, within DDA3937_RS02795at 616.385 kb on + strand, within DDA3937_RS02795at 616.385 kb on + strandat 616.661 kb on - strand, within DDA3937_RS02800at 616.702 kb on + strand, within DDA3937_RS02800at 616.707 kb on - strand, within DDA3937_RS02800at 616.843 kb on + strand, within DDA3937_RS02800at 616.844 kb on - strand, within DDA3937_RS02800at 616.860 kb on - strand, within DDA3937_RS02800at 616.860 kb on - strand, within DDA3937_RS02800at 616.947 kb on + strandat 616.984 kb on - strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 617.024 kb on - strandat 617.087 kb on + strandat 617.088 kb on - strandat 617.088 kb on - strandat 617.165 kb on - strandat 617.165 kb on - strandat 617.187 kb on + strand, within DDA3937_RS02805at 617.207 kb on + strand, within DDA3937_RS02805at 617.207 kb on + strand, within DDA3937_RS02805at 617.207 kb on + strand, within DDA3937_RS02805at 617.208 kb on - strand, within DDA3937_RS02805at 617.208 kb on - strand, within DDA3937_RS02805

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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614,946 + DDA3937_RS02780 0.82 -0.2
614,946 + DDA3937_RS02780 0.82 -0.9
614,947 - DDA3937_RS02780 0.82 -0.8
614,947 - DDA3937_RS02780 0.82 -0.3
614,950 + DDA3937_RS02780 0.82 +0.4
614,950 + DDA3937_RS02780 0.82 -1.3
614,951 - DDA3937_RS02780 0.83 +1.0
614,951 - DDA3937_RS02780 0.83 +0.1
614,951 - DDA3937_RS02780 0.83 +1.2
614,951 - DDA3937_RS02780 0.83 +0.1
615,082 + +0.4
615,083 - +0.6
615,083 - -1.5
615,100 - +0.4
615,114 + -1.1
615,142 + +2.6
615,142 + -0.3
615,143 - +1.2
615,185 + -0.1
615,215 - -1.5
615,291 + DDA3937_RS02785 0.16 -1.9
615,291 + DDA3937_RS02785 0.16 -0.9
615,291 + DDA3937_RS02785 0.16 -1.2
615,291 + DDA3937_RS02785 0.16 -1.5
615,292 - DDA3937_RS02785 0.16 +0.1
615,292 - DDA3937_RS02785 0.16 -0.2
615,292 - DDA3937_RS02785 0.16 -0.9
615,292 - DDA3937_RS02785 0.16 +1.2
615,292 - DDA3937_RS02785 0.16 -0.0
615,292 - DDA3937_RS02785 0.16 -0.8
615,295 + DDA3937_RS02785 0.17 -1.2
615,296 - DDA3937_RS02785 0.17 -1.1
615,509 + DDA3937_RS02785 0.71 -0.2
615,509 + DDA3937_RS02785 0.71 +0.1
615,509 + DDA3937_RS02785 0.71 +0.1
615,509 + DDA3937_RS02785 0.71 -0.6
615,509 + DDA3937_RS02785 0.71 +0.1
615,509 + DDA3937_RS02785 0.71 -0.3
615,509 + DDA3937_RS02785 0.71 +0.3
615,509 + DDA3937_RS02785 0.71 +0.5
615,509 + DDA3937_RS02785 0.71 +0.3
615,510 - DDA3937_RS02785 0.71 -0.9
615,510 - DDA3937_RS02785 0.71 +0.2
615,510 - DDA3937_RS02785 0.71 +0.9
615,510 - DDA3937_RS02785 0.71 +4.4
615,510 - DDA3937_RS02785 0.71 -2.4
615,510 - DDA3937_RS02785 0.71 +0.7
615,510 - DDA3937_RS02785 0.71 -0.7
615,510 - DDA3937_RS02785 0.71 -1.9
615,510 - DDA3937_RS02785 0.71 -1.2
615,510 - DDA3937_RS02785 0.71 -1.6
615,510 - DDA3937_RS02785 0.71 -0.8
615,511 + DDA3937_RS02785 0.71 -0.6
615,511 + DDA3937_RS02785 0.71 +0.1
615,511 + DDA3937_RS02785 0.71 -0.8
615,511 + DDA3937_RS02785 0.71 -0.2
615,511 + DDA3937_RS02785 0.71 -1.1
615,511 + DDA3937_RS02785 0.71 -0.0
615,511 + DDA3937_RS02785 0.71 -1.3
615,511 + DDA3937_RS02785 0.71 -0.7
615,511 + DDA3937_RS02785 0.71 -0.5
615,511 + DDA3937_RS02785 0.71 -0.5
615,511 + DDA3937_RS02785 0.71 +0.0
615,511 + DDA3937_RS02785 0.71 -0.7
615,511 + DDA3937_RS02785 0.71 +0.8
615,511 + DDA3937_RS02785 0.71 +0.9
615,511 + DDA3937_RS02785 0.71 +1.1
615,511 + DDA3937_RS02785 0.71 +2.0
615,512 - DDA3937_RS02785 0.72 -2.3
615,512 - DDA3937_RS02785 0.72 -0.9
615,512 - DDA3937_RS02785 0.72 -1.3
615,512 - DDA3937_RS02785 0.72 +0.3
615,512 - DDA3937_RS02785 0.72 +0.5
615,512 - DDA3937_RS02785 0.72 +0.9
615,512 - DDA3937_RS02785 0.72 -1.8
615,512 - DDA3937_RS02785 0.72 -1.2
615,512 - DDA3937_RS02785 0.72 +1.4
615,512 - DDA3937_RS02785 0.72 +0.0
615,512 - DDA3937_RS02785 0.72 +0.0
615,512 - DDA3937_RS02785 0.72 -1.0
615,513 - DDA3937_RS02785 0.72 -1.6
615,529 + DDA3937_RS02785 0.76 +0.1
615,529 + DDA3937_RS02785 0.76 +0.4
615,530 - DDA3937_RS02785 0.76 +0.7
615,564 - DDA3937_RS02785 0.85 +0.2
615,628 - -0.5
615,638 - +0.3
615,638 - -1.3
615,693 - +0.2
615,693 - -0.7
615,721 + +1.3
615,721 + +0.2
615,721 + +0.1
615,721 + -0.8
615,721 + +2.2
615,722 - +0.7
615,722 - -1.7
615,722 - -0.0
615,722 - -1.8
615,724 + +0.4
615,725 - +0.2
615,768 + -0.5
615,824 + -0.9
615,824 + -0.1
615,839 + +0.7
615,840 - -0.7
615,840 - -0.7
615,863 + -3.3
615,954 + -2.0
615,955 - DDA3937_RS02790 0.10 +0.2
615,966 + DDA3937_RS02790 0.14 -0.8
616,044 + DDA3937_RS02790 0.39 -1.8
616,385 + DDA3937_RS02795 0.40 +0.4
616,385 + DDA3937_RS02795 0.40 +0.9
616,385 + DDA3937_RS02795 0.40 -0.3
616,385 + +0.2
616,661 - DDA3937_RS02800 0.11 -2.3
616,702 + DDA3937_RS02800 0.24 -0.2
616,707 - DDA3937_RS02800 0.26 +1.2
616,843 + DDA3937_RS02800 0.70 -1.0
616,844 - DDA3937_RS02800 0.71 -1.7
616,860 - DDA3937_RS02800 0.76 +1.6
616,860 - DDA3937_RS02800 0.76 -1.4
616,947 + +0.5
616,984 - +0.1
616,987 + +0.1
616,987 + -1.1
616,987 + +1.1
616,987 + -0.9
616,987 + -1.2
616,987 + -0.4
616,987 + -0.2
616,987 + -0.9
616,987 + -1.6
616,987 + -0.7
616,987 + -0.2
616,988 - -1.0
616,988 - -0.1
616,988 - +0.7
616,988 - -1.0
616,988 - +0.5
616,988 - -0.8
616,988 - -0.5
616,988 - +3.1
616,988 - +0.9
616,988 - -1.2
617,024 - -0.6
617,087 + -0.4
617,088 - -1.1
617,088 - +1.5
617,165 - +0.2
617,165 - -0.7
617,187 + DDA3937_RS02805 0.16 -1.2
617,207 + DDA3937_RS02805 0.21 -2.1
617,207 + DDA3937_RS02805 0.21 -0.1
617,207 + DDA3937_RS02805 0.21 -1.8
617,208 - DDA3937_RS02805 0.22 -0.8
617,208 - DDA3937_RS02805 0.22 -0.4

Or see this region's nucleotide sequence