Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02460 and DDA3937_RS02465 are separated by 284 nucleotides DDA3937_RS02465 and DDA3937_RS02470 are separated by 41 nucleotides
DDA3937_RS02460: DDA3937_RS02460 - TatD family hydrolase, at 544,411 to 545,253
_RS02460
DDA3937_RS02465: DDA3937_RS02465 - 4'-phosphopantetheinyl transferase superfamily protein, at 545,538 to 546,257
_RS02465
DDA3937_RS02470: DDA3937_RS02470 - SDR family NAD(P)-dependent oxidoreductase, at 546,299 to 547,063
_RS02470
Position (kb) 545
546
547 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 544.624 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.651 kb on + strand, within DDA3937_RS02460 at 544.652 kb on - strand, within DDA3937_RS02460 at 544.753 kb on + strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.754 kb on - strand, within DDA3937_RS02460 at 544.807 kb on - strand, within DDA3937_RS02460 at 544.877 kb on + strand, within DDA3937_RS02460 at 544.878 kb on - strand, within DDA3937_RS02460 at 544.934 kb on - strand, within DDA3937_RS02460 at 544.934 kb on - strand, within DDA3937_RS02460 at 544.966 kb on + strand, within DDA3937_RS02460 at 544.967 kb on - strand, within DDA3937_RS02460 at 544.967 kb on - strand, within DDA3937_RS02460 at 544.969 kb on + strand, within DDA3937_RS02460 at 544.969 kb on + strand, within DDA3937_RS02460 at 544.970 kb on - strand, within DDA3937_RS02460 at 544.970 kb on - strand, within DDA3937_RS02460 at 544.997 kb on - strand, within DDA3937_RS02460 at 545.121 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.124 kb on + strand, within DDA3937_RS02460 at 545.125 kb on - strand, within DDA3937_RS02460 at 545.125 kb on - strand, within DDA3937_RS02460 at 545.125 kb on - strand, within DDA3937_RS02460 at 545.271 kb on + strand at 545.305 kb on - strand at 545.305 kb on - strand at 545.307 kb on + strand at 545.307 kb on + strand at 545.307 kb on + strand at 545.307 kb on + strand at 545.308 kb on - strand at 545.317 kb on + strand at 545.317 kb on + strand at 545.318 kb on - strand at 545.340 kb on - strand at 545.425 kb on - strand at 545.456 kb on - strand at 545.471 kb on + strand at 545.472 kb on - strand at 545.481 kb on + strand at 545.481 kb on + strand at 545.482 kb on - strand at 545.482 kb on - strand at 545.559 kb on - strand at 545.604 kb on + strand at 545.604 kb on + strand at 545.604 kb on + strand at 545.605 kb on - strand at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.784 kb on + strand, within DDA3937_RS02465 at 545.785 kb on - strand, within DDA3937_RS02465 at 545.785 kb on - strand, within DDA3937_RS02465 at 545.785 kb on - strand, within DDA3937_RS02465 at 545.832 kb on - strand, within DDA3937_RS02465 at 545.952 kb on - strand, within DDA3937_RS02465 at 545.952 kb on - strand, within DDA3937_RS02465 at 545.986 kb on - strand, within DDA3937_RS02465 at 545.986 kb on - strand, within DDA3937_RS02465 at 546.026 kb on + strand, within DDA3937_RS02465 at 546.027 kb on - strand, within DDA3937_RS02465 at 546.064 kb on - strand, within DDA3937_RS02465 at 546.075 kb on + strand, within DDA3937_RS02465 at 546.075 kb on + strand, within DDA3937_RS02465 at 546.075 kb on + strand, within DDA3937_RS02465 at 546.076 kb on - strand, within DDA3937_RS02465 at 546.213 kb on + strand at 546.213 kb on + strand at 546.214 kb on - strand at 546.214 kb on - strand at 546.214 kb on - strand at 546.321 kb on + strand at 546.321 kb on + strand at 546.550 kb on + strand, within DDA3937_RS02470 at 546.746 kb on + strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.747 kb on - strand, within DDA3937_RS02470 at 546.776 kb on + strand at 546.776 kb on + strand, within DDA3937_RS02470 at 546.776 kb on + strand, within DDA3937_RS02470 at 546.776 kb on + strand, within DDA3937_RS02470 at 546.777 kb on - strand, within DDA3937_RS02470 at 546.833 kb on - strand, within DDA3937_RS02470 at 546.833 kb on - strand, within DDA3937_RS02470 at 546.907 kb on + strand, within DDA3937_RS02470 at 546.908 kb on - strand, within DDA3937_RS02470 at 547.007 kb on + strand at 547.058 kb on - strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.101 kb on + strand at 547.101 kb on + strand at 547.102 kb on - strand at 547.144 kb on + strand at 547.144 kb on + strand at 547.145 kb on - strand at 547.147 kb on + strand at 547.148 kb on - strand at 547.167 kb on - strand at 547.167 kb on - strand at 547.213 kb on - strand at 547.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 544,624 + DDA3937_RS02460 0.25 -0.1 544,651 + DDA3937_RS02460 0.28 +0.3 544,651 + DDA3937_RS02460 0.28 +1.0 544,651 + DDA3937_RS02460 0.28 -0.2 544,652 - DDA3937_RS02460 0.29 -0.8 544,753 + DDA3937_RS02460 0.41 +0.4 544,754 - DDA3937_RS02460 0.41 -0.3 544,754 - DDA3937_RS02460 0.41 -0.7 544,754 - DDA3937_RS02460 0.41 -1.9 544,754 - DDA3937_RS02460 0.41 -0.9 544,754 - DDA3937_RS02460 0.41 -0.4 544,807 - DDA3937_RS02460 0.47 -0.9 544,877 + DDA3937_RS02460 0.55 -1.2 544,878 - DDA3937_RS02460 0.55 -0.6 544,934 - DDA3937_RS02460 0.62 +0.3 544,934 - DDA3937_RS02460 0.62 +1.5 544,966 + DDA3937_RS02460 0.66 -1.1 544,967 - DDA3937_RS02460 0.66 +1.1 544,967 - DDA3937_RS02460 0.66 +0.2 544,969 + DDA3937_RS02460 0.66 +0.6 544,969 + DDA3937_RS02460 0.66 +1.1 544,970 - DDA3937_RS02460 0.66 -1.7 544,970 - DDA3937_RS02460 0.66 -0.2 544,997 - DDA3937_RS02460 0.70 +2.2 545,121 + DDA3937_RS02460 0.84 -0.3 545,124 + DDA3937_RS02460 0.85 -0.6 545,124 + DDA3937_RS02460 0.85 -0.7 545,124 + DDA3937_RS02460 0.85 -0.9 545,124 + DDA3937_RS02460 0.85 +0.6 545,124 + DDA3937_RS02460 0.85 -1.0 545,125 - DDA3937_RS02460 0.85 +1.0 545,125 - DDA3937_RS02460 0.85 -0.8 545,125 - DDA3937_RS02460 0.85 -0.1 545,271 + -1.3 545,305 - -0.2 545,305 - -1.6 545,307 + +0.3 545,307 + -0.4 545,307 + -0.4 545,307 + +0.2 545,308 - +0.4 545,317 + +0.6 545,317 + -0.2 545,318 - +0.2 545,340 - -1.1 545,425 - -0.0 545,456 - +0.7 545,471 + -0.3 545,472 - +1.1 545,481 + -0.4 545,481 + -1.3 545,482 - -2.4 545,482 - +0.2 545,559 - -1.5 545,604 + -0.2 545,604 + -0.7 545,604 + +0.7 545,605 - -2.5 545,784 + DDA3937_RS02465 0.34 -1.6 545,784 + DDA3937_RS02465 0.34 -0.3 545,784 + DDA3937_RS02465 0.34 -0.7 545,784 + DDA3937_RS02465 0.34 -0.6 545,784 + DDA3937_RS02465 0.34 +0.9 545,784 + DDA3937_RS02465 0.34 -2.3 545,784 + DDA3937_RS02465 0.34 -1.2 545,785 - DDA3937_RS02465 0.34 +1.2 545,785 - DDA3937_RS02465 0.34 -0.6 545,785 - DDA3937_RS02465 0.34 +0.8 545,832 - DDA3937_RS02465 0.41 -0.8 545,952 - DDA3937_RS02465 0.57 -1.3 545,952 - DDA3937_RS02465 0.57 +1.2 545,986 - DDA3937_RS02465 0.62 -0.6 545,986 - DDA3937_RS02465 0.62 +0.2 546,026 + DDA3937_RS02465 0.68 +0.7 546,027 - DDA3937_RS02465 0.68 -2.5 546,064 - DDA3937_RS02465 0.73 -1.3 546,075 + DDA3937_RS02465 0.75 -0.4 546,075 + DDA3937_RS02465 0.75 +0.7 546,075 + DDA3937_RS02465 0.75 -1.0 546,076 - DDA3937_RS02465 0.75 -0.0 546,213 + -0.3 546,213 + -0.3 546,214 - +4.2 546,214 - -0.6 546,214 - -0.9 546,321 + -0.0 546,321 + -1.1 546,550 + DDA3937_RS02470 0.33 -1.6 546,746 + DDA3937_RS02470 0.58 -0.9 546,747 - DDA3937_RS02470 0.59 -0.1 546,747 - DDA3937_RS02470 0.59 +0.7 546,747 - DDA3937_RS02470 0.59 -0.3 546,747 - DDA3937_RS02470 0.59 -0.9 546,747 - DDA3937_RS02470 0.59 -0.3 546,747 - DDA3937_RS02470 0.59 -1.1 546,747 - DDA3937_RS02470 0.59 -0.7 546,776 + +0.7 546,776 + DDA3937_RS02470 0.62 -0.8 546,776 + DDA3937_RS02470 0.62 -0.3 546,776 + DDA3937_RS02470 0.62 -0.1 546,777 - DDA3937_RS02470 0.62 -2.5 546,833 - DDA3937_RS02470 0.70 -1.1 546,833 - DDA3937_RS02470 0.70 -1.6 546,907 + DDA3937_RS02470 0.79 +4.6 546,908 - DDA3937_RS02470 0.80 -0.8 547,007 + -0.1 547,058 - +0.4 547,061 + -0.6 547,061 + -0.9 547,061 + -1.3 547,061 + -1.7 547,062 - -0.1 547,062 - +0.5 547,062 - +0.9 547,101 + +1.7 547,101 + -1.3 547,102 - -1.7 547,144 + +0.2 547,144 + -0.9 547,145 - +0.1 547,147 + +4.6 547,148 - -1.2 547,167 - +2.2 547,167 - -0.4 547,213 - +2.2 547,229 - -1.0
Or see this region's nucleotide sequence