Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02400 and DDA3937_RS02405 are separated by 332 nucleotides DDA3937_RS02405 and DDA3937_RS02410 are separated by 319 nucleotides DDA3937_RS02410 and DDA3937_RS02415 are separated by 13 nucleotides
DDA3937_RS02400: DDA3937_RS02400 - YecA family protein, at 532,127 to 532,711
_RS02400
DDA3937_RS02405: DDA3937_RS02405 - cell division protein ZapA, at 533,044 to 533,373
_RS02405
DDA3937_RS02410: DDA3937_RS02410 - 5-formyltetrahydrofolate cyclo-ligase, at 533,693 to 534,307
_RS02410
DDA3937_RS02415: DDA3937_RS02415 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 534,321 to 535,577
_RS02415
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.746 kb on - strand at 532.746 kb on - strand at 532.751 kb on - strand at 532.751 kb on - strand at 532.770 kb on - strand at 532.770 kb on - strand at 532.770 kb on - strand at 532.772 kb on - strand at 532.772 kb on - strand at 532.772 kb on - strand at 532.797 kb on + strand at 532.797 kb on + strand at 532.798 kb on - strand at 532.798 kb on - strand at 532.804 kb on + strand at 532.804 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.909 kb on + strand at 532.909 kb on + strand at 532.909 kb on + strand at 532.919 kb on - strand at 532.920 kb on + strand at 532.920 kb on + strand at 532.921 kb on - strand at 532.921 kb on - strand at 532.931 kb on + strand at 532.931 kb on + strand at 532.931 kb on + strand at 532.932 kb on - strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.950 kb on - strand at 532.950 kb on - strand at 532.950 kb on - strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.953 kb on + strand at 532.953 kb on + strand at 533.341 kb on - strand at 533.396 kb on - strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.434 kb on - strand at 533.528 kb on + strand at 533.529 kb on - strand at 533.609 kb on + strand at 533.645 kb on + strand at 533.645 kb on + strand at 533.646 kb on - strand at 533.650 kb on - strand at 533.674 kb on + strand at 533.674 kb on + strand at 533.674 kb on + strand at 533.675 kb on - strand at 533.675 kb on - strand at 533.675 kb on - strand at 533.739 kb on + strand at 533.804 kb on - strand, within DDA3937_RS02410 at 533.948 kb on + strand, within DDA3937_RS02410 at 533.948 kb on + strand, within DDA3937_RS02410 at 533.948 kb on + strand, within DDA3937_RS02410 at 533.949 kb on - strand, within DDA3937_RS02410 at 533.949 kb on - strand, within DDA3937_RS02410 at 534.158 kb on + strand, within DDA3937_RS02410 at 534.246 kb on + strand at 534.277 kb on + strand at 534.277 kb on + strand at 534.277 kb on + strand at 534.323 kb on - strand at 534.406 kb on + strand at 534.431 kb on - strand at 534.431 kb on - strand at 534.440 kb on + strand at 534.440 kb on + strand at 534.440 kb on + strand at 534.441 kb on - strand at 534.455 kb on + strand, within DDA3937_RS02415 at 534.456 kb on - strand, within DDA3937_RS02415 at 534.456 kb on - strand, within DDA3937_RS02415 at 534.456 kb on - strand, within DDA3937_RS02415 at 534.568 kb on + strand, within DDA3937_RS02415 at 534.614 kb on - strand, within DDA3937_RS02415 at 534.614 kb on - strand, within DDA3937_RS02415 at 534.676 kb on + strand, within DDA3937_RS02415 at 534.677 kb on - strand, within DDA3937_RS02415 at 534.697 kb on + strand, within DDA3937_RS02415 at 534.698 kb on - strand, within DDA3937_RS02415 at 534.779 kb on - strand, within DDA3937_RS02415 at 534.779 kb on - strand, within DDA3937_RS02415 at 534.779 kb on - strand, within DDA3937_RS02415 at 534.914 kb on + strand at 534.914 kb on + strand, within DDA3937_RS02415 at 534.915 kb on - strand, within DDA3937_RS02415 at 534.915 kb on - strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 535.022 kb on - strand, within DDA3937_RS02415 at 535.051 kb on + strand, within DDA3937_RS02415 at 535.051 kb on + strand, within DDA3937_RS02415 at 535.085 kb on + strand, within DDA3937_RS02415 at 535.085 kb on + strand, within DDA3937_RS02415 at 535.085 kb on + strand, within DDA3937_RS02415 at 535.086 kb on - strand, within DDA3937_RS02415 at 535.086 kb on - strand, within DDA3937_RS02415 at 535.296 kb on + strand, within DDA3937_RS02415 at 535.296 kb on + strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 532,697 - +1.6 532,697 - -0.3 532,697 - +1.4 532,697 - +0.9 532,697 - -1.2 532,746 - -0.3 532,746 - +0.3 532,751 - +0.1 532,751 - +1.7 532,770 - -0.1 532,770 - -2.2 532,770 - -1.7 532,772 - -1.8 532,772 - -2.3 532,772 - +1.2 532,797 + -0.4 532,797 + -2.7 532,798 - +0.1 532,798 - -2.2 532,804 + +0.1 532,804 + +4.9 532,853 + +1.4 532,853 + -1.3 532,853 + +0.6 532,853 + -1.7 532,853 + -2.2 532,853 + +0.7 532,853 + +0.1 532,853 + -0.7 532,853 + -0.8 532,853 + -0.3 532,854 - +0.0 532,854 - -0.3 532,854 - -1.3 532,854 - -0.6 532,854 - +1.4 532,854 - -1.0 532,862 - -2.0 532,862 - +0.4 532,862 - +0.3 532,862 - -0.1 532,909 + -1.0 532,909 + +0.2 532,909 + +1.0 532,919 - -2.7 532,920 + +0.1 532,920 + +3.9 532,921 - -0.8 532,921 - -1.2 532,931 + -0.7 532,931 + -2.2 532,931 + -0.6 532,932 - -1.1 532,949 + -0.1 532,949 + -1.3 532,949 + -3.0 532,949 + -0.3 532,949 + -0.9 532,949 + -0.1 532,949 + -0.3 532,950 - -0.8 532,950 - -2.1 532,950 - -0.6 532,951 + -1.3 532,951 + -2.3 532,951 + -0.1 532,951 + +1.2 532,951 + +0.2 532,951 + -1.3 532,951 + -1.3 532,953 + +0.7 532,953 + -1.1 533,341 - -0.3 533,396 - +0.0 533,433 + -0.9 533,433 + -0.2 533,433 + -0.4 533,433 + +0.4 533,433 + -0.1 533,433 + -1.2 533,433 + -0.6 533,434 - -0.1 533,528 + -1.7 533,529 - -1.1 533,609 + -1.8 533,645 + -0.9 533,645 + +2.6 533,646 - -0.6 533,650 - +0.2 533,674 + +2.2 533,674 + -0.3 533,674 + +0.2 533,675 - -1.1 533,675 - -0.3 533,675 - -0.1 533,739 + -0.6 533,804 - DDA3937_RS02410 0.18 -0.3 533,948 + DDA3937_RS02410 0.41 -0.2 533,948 + DDA3937_RS02410 0.41 -1.1 533,948 + DDA3937_RS02410 0.41 -0.1 533,949 - DDA3937_RS02410 0.42 -1.5 533,949 - DDA3937_RS02410 0.42 -0.6 534,158 + DDA3937_RS02410 0.76 +0.1 534,246 + +0.4 534,277 + -2.1 534,277 + -2.2 534,277 + -1.3 534,323 - -1.5 534,406 + +0.2 534,431 - -0.7 534,431 - -1.3 534,440 + -0.2 534,440 + -0.1 534,440 + +0.2 534,441 - -1.2 534,455 + DDA3937_RS02415 0.11 -1.1 534,456 - DDA3937_RS02415 0.11 -1.0 534,456 - DDA3937_RS02415 0.11 -1.0 534,456 - DDA3937_RS02415 0.11 -1.7 534,568 + DDA3937_RS02415 0.20 -1.6 534,614 - DDA3937_RS02415 0.23 -0.9 534,614 - DDA3937_RS02415 0.23 +1.7 534,676 + DDA3937_RS02415 0.28 -0.2 534,677 - DDA3937_RS02415 0.28 -1.1 534,697 + DDA3937_RS02415 0.30 -1.0 534,698 - DDA3937_RS02415 0.30 -1.9 534,779 - DDA3937_RS02415 0.36 +0.2 534,779 - DDA3937_RS02415 0.36 -0.5 534,779 - DDA3937_RS02415 0.36 -0.6 534,914 + +3.2 534,914 + DDA3937_RS02415 0.47 +0.7 534,915 - DDA3937_RS02415 0.47 -0.1 534,915 - DDA3937_RS02415 0.47 +1.3 534,916 + DDA3937_RS02415 0.47 -0.5 534,916 + DDA3937_RS02415 0.47 -0.3 534,916 + DDA3937_RS02415 0.47 +0.1 534,916 + DDA3937_RS02415 0.47 +0.0 534,916 + DDA3937_RS02415 0.47 +1.0 534,917 - DDA3937_RS02415 0.47 -0.1 534,917 - DDA3937_RS02415 0.47 -0.9 534,917 - DDA3937_RS02415 0.47 +1.7 534,917 - DDA3937_RS02415 0.47 +0.1 534,917 - DDA3937_RS02415 0.47 +0.1 534,917 - DDA3937_RS02415 0.47 -0.1 534,917 - DDA3937_RS02415 0.47 -1.1 535,022 - DDA3937_RS02415 0.56 +7.0 535,051 + DDA3937_RS02415 0.58 +1.2 535,051 + DDA3937_RS02415 0.58 -1.6 535,085 + DDA3937_RS02415 0.61 +0.2 535,085 + DDA3937_RS02415 0.61 -1.8 535,085 + DDA3937_RS02415 0.61 +1.0 535,086 - DDA3937_RS02415 0.61 +2.6 535,086 - DDA3937_RS02415 0.61 +1.8 535,296 + DDA3937_RS02415 0.78 -0.7 535,296 + DDA3937_RS02415 0.78 -0.4 535,297 - DDA3937_RS02415 0.78 +0.6 535,297 - DDA3937_RS02415 0.78 +0.1 535,297 - DDA3937_RS02415 0.78 -1.3 535,297 - DDA3937_RS02415 0.78 +0.2 535,297 - DDA3937_RS02415 0.78 -2.4 535,297 - -0.3
Or see this region's nucleotide sequence