Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02390 and DDA3937_RS02395 overlap by 4 nucleotides DDA3937_RS02395 and DDA3937_RS02400 are separated by 38 nucleotides DDA3937_RS02400 and DDA3937_RS02405 are separated by 332 nucleotides
DDA3937_RS02390: DDA3937_RS02390 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 529,585 to 530,763
_RS02390
DDA3937_RS02395: DDA3937_RS02395 - Xaa-Pro aminopeptidase, at 530,760 to 532,088
_RS02395
DDA3937_RS02400: DDA3937_RS02400 - YecA family protein, at 532,127 to 532,711
_RS02400
DDA3937_RS02405: DDA3937_RS02405 - cell division protein ZapA, at 533,044 to 533,373
_RS02405
Position (kb) 530
531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 530.930 kb on - strand, within DDA3937_RS02395 at 531.407 kb on - strand, within DDA3937_RS02395 at 531.990 kb on - strand at 532.129 kb on - strand at 532.129 kb on - strand at 532.211 kb on + strand, within DDA3937_RS02400 at 532.211 kb on + strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.215 kb on + strand, within DDA3937_RS02400 at 532.215 kb on + strand, within DDA3937_RS02400 at 532.216 kb on - strand, within DDA3937_RS02400 at 532.216 kb on - strand, within DDA3937_RS02400 at 532.273 kb on - strand, within DDA3937_RS02400 at 532.412 kb on + strand, within DDA3937_RS02400 at 532.412 kb on + strand, within DDA3937_RS02400 at 532.413 kb on - strand, within DDA3937_RS02400 at 532.413 kb on - strand, within DDA3937_RS02400 at 532.498 kb on - strand, within DDA3937_RS02400 at 532.498 kb on - strand, within DDA3937_RS02400 at 532.665 kb on - strand at 532.665 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.746 kb on - strand at 532.746 kb on - strand at 532.751 kb on - strand at 532.751 kb on - strand at 532.770 kb on - strand at 532.770 kb on - strand at 532.770 kb on - strand at 532.772 kb on - strand at 532.772 kb on - strand at 532.772 kb on - strand at 532.797 kb on + strand at 532.797 kb on + strand at 532.798 kb on - strand at 532.798 kb on - strand at 532.804 kb on + strand at 532.804 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.909 kb on + strand at 532.909 kb on + strand at 532.909 kb on + strand at 532.919 kb on - strand at 532.920 kb on + strand at 532.920 kb on + strand at 532.921 kb on - strand at 532.921 kb on - strand at 532.931 kb on + strand at 532.931 kb on + strand at 532.931 kb on + strand at 532.932 kb on - strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.950 kb on - strand at 532.950 kb on - strand at 532.950 kb on - strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.953 kb on + strand at 532.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 530,930 - DDA3937_RS02395 0.13 -0.7 531,407 - DDA3937_RS02395 0.49 -0.9 531,990 - +0.1 532,129 - +0.7 532,129 - -0.5 532,211 + DDA3937_RS02400 0.14 +1.2 532,211 + DDA3937_RS02400 0.14 -1.1 532,212 - DDA3937_RS02400 0.15 +1.2 532,212 - DDA3937_RS02400 0.15 -2.4 532,212 - DDA3937_RS02400 0.15 -1.6 532,212 - DDA3937_RS02400 0.15 -0.8 532,212 - DDA3937_RS02400 0.15 -1.2 532,212 - DDA3937_RS02400 0.15 -0.3 532,212 - DDA3937_RS02400 0.15 -2.5 532,212 - DDA3937_RS02400 0.15 -0.6 532,215 + DDA3937_RS02400 0.15 +0.1 532,215 + DDA3937_RS02400 0.15 -0.3 532,216 - DDA3937_RS02400 0.15 -0.4 532,216 - DDA3937_RS02400 0.15 -1.1 532,273 - DDA3937_RS02400 0.25 -2.3 532,412 + DDA3937_RS02400 0.49 -0.6 532,412 + DDA3937_RS02400 0.49 +2.0 532,413 - DDA3937_RS02400 0.49 -1.2 532,413 - DDA3937_RS02400 0.49 +1.0 532,498 - DDA3937_RS02400 0.63 -0.9 532,498 - DDA3937_RS02400 0.63 -0.1 532,665 - -1.1 532,665 - -0.6 532,697 - +1.6 532,697 - -0.3 532,697 - +1.4 532,697 - +0.9 532,697 - -1.2 532,746 - -0.3 532,746 - +0.3 532,751 - +0.1 532,751 - +1.7 532,770 - -0.1 532,770 - -2.2 532,770 - -1.7 532,772 - -1.8 532,772 - -2.3 532,772 - +1.2 532,797 + -0.4 532,797 + -2.7 532,798 - +0.1 532,798 - -2.2 532,804 + +0.1 532,804 + +4.9 532,853 + +1.4 532,853 + -1.3 532,853 + +0.6 532,853 + -1.7 532,853 + -2.2 532,853 + +0.7 532,853 + +0.1 532,853 + -0.7 532,853 + -0.8 532,853 + -0.3 532,854 - +0.0 532,854 - -0.3 532,854 - -1.3 532,854 - -0.6 532,854 - +1.4 532,854 - -1.0 532,862 - -2.0 532,862 - +0.4 532,862 - +0.3 532,862 - -0.1 532,909 + -1.0 532,909 + +0.2 532,909 + +1.0 532,919 - -2.7 532,920 + +0.1 532,920 + +3.9 532,921 - -0.8 532,921 - -1.2 532,931 + -0.7 532,931 + -2.2 532,931 + -0.6 532,932 - -1.1 532,949 + -0.1 532,949 + -1.3 532,949 + -3.0 532,949 + -0.3 532,949 + -0.9 532,949 + -0.1 532,949 + -0.3 532,950 - -0.8 532,950 - -2.1 532,950 - -0.6 532,951 + -1.3 532,951 + -2.3 532,951 + -0.1 532,951 + +1.2 532,951 + +0.2 532,951 + -1.3 532,951 + -1.3 532,953 + +0.7 532,953 + -1.1
Or see this region's nucleotide sequence