Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01870

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01860 and DDA3937_RS01865 are separated by 385 nucleotidesDDA3937_RS01865 and DDA3937_RS01870 are separated by 108 nucleotidesDDA3937_RS01870 and DDA3937_RS01875 are separated by 99 nucleotides DDA3937_RS01860: DDA3937_RS01860 - type I-E CRISPR-associated protein Cse1/CasA, at 414,296 to 415,804 _RS01860 DDA3937_RS01865: DDA3937_RS01865 - YhbP family protein, at 416,190 to 416,642 _RS01865 DDA3937_RS01870: DDA3937_RS01870 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 416,751 to 417,215 _RS01870 DDA3937_RS01875: DDA3937_RS01875 - anaerobic ribonucleoside-triphosphate reductase, at 417,315 to 419,453 _RS01875 Position (kb) 416 417 418Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 415.753 kb on - strandat 415.870 kb on + strandat 415.889 kb on + strandat 415.916 kb on + strandat 415.916 kb on + strandat 415.917 kb on - strandat 415.917 kb on - strandat 415.917 kb on - strandat 415.920 kb on + strandat 415.920 kb on + strandat 415.920 kb on + strandat 415.920 kb on + strandat 415.920 kb on + strandat 415.920 kb on + strandat 415.920 kb on + strandat 415.920 kb on + strandat 415.921 kb on - strandat 415.921 kb on - strandat 415.921 kb on - strandat 415.921 kb on - strandat 415.975 kb on + strandat 415.975 kb on + strandat 415.975 kb on + strandat 415.975 kb on + strandat 415.975 kb on + strandat 415.976 kb on - strandat 415.976 kb on - strandat 415.976 kb on - strandat 415.976 kb on - strandat 416.071 kb on + strandat 416.090 kb on + strandat 416.112 kb on + strandat 416.112 kb on + strandat 416.112 kb on + strandat 416.113 kb on - strandat 416.113 kb on - strandat 416.113 kb on - strandat 416.113 kb on - strandat 416.129 kb on - strandat 416.164 kb on - strandat 416.204 kb on + strandat 416.205 kb on - strandat 416.226 kb on + strandat 416.278 kb on + strand, within DDA3937_RS01865at 416.278 kb on + strand, within DDA3937_RS01865at 416.278 kb on + strand, within DDA3937_RS01865at 416.298 kb on + strand, within DDA3937_RS01865at 416.298 kb on + strand, within DDA3937_RS01865at 416.328 kb on + strand, within DDA3937_RS01865at 416.367 kb on - strand, within DDA3937_RS01865at 416.499 kb on + strand, within DDA3937_RS01865at 416.499 kb on + strand, within DDA3937_RS01865at 416.501 kb on + strand, within DDA3937_RS01865at 416.501 kb on + strand, within DDA3937_RS01865at 416.622 kb on - strandat 416.640 kb on + strandat 416.640 kb on + strandat 416.641 kb on - strandat 416.690 kb on - strandat 416.692 kb on - strandat 416.915 kb on + strand, within DDA3937_RS01870at 416.915 kb on + strand, within DDA3937_RS01870at 416.915 kb on + strand, within DDA3937_RS01870at 416.915 kb on + strand, within DDA3937_RS01870at 416.915 kb on + strand, within DDA3937_RS01870at 416.916 kb on - strand, within DDA3937_RS01870at 417.024 kb on + strand, within DDA3937_RS01870at 417.024 kb on + strand, within DDA3937_RS01870at 417.024 kb on + strand, within DDA3937_RS01870at 417.025 kb on - strand, within DDA3937_RS01870at 417.025 kb on - strand, within DDA3937_RS01870at 417.025 kb on - strand, within DDA3937_RS01870at 417.116 kb on - strand, within DDA3937_RS01870at 417.158 kb on + strand, within DDA3937_RS01870at 417.159 kb on - strand, within DDA3937_RS01870at 417.199 kb on + strandat 417.199 kb on + strandat 417.199 kb on + strandat 417.200 kb on - strandat 417.208 kb on + strandat 417.209 kb on - strandat 417.209 kb on - strandat 417.473 kb on + strandat 417.507 kb on - strandat 417.521 kb on - strandat 417.550 kb on + strand, within DDA3937_RS01875at 417.550 kb on + strand, within DDA3937_RS01875at 417.551 kb on - strand, within DDA3937_RS01875at 417.553 kb on + strand, within DDA3937_RS01875at 417.568 kb on + strand, within DDA3937_RS01875at 417.568 kb on + strand, within DDA3937_RS01875at 417.568 kb on + strand, within DDA3937_RS01875at 417.569 kb on - strand, within DDA3937_RS01875at 417.574 kb on + strand, within DDA3937_RS01875at 417.574 kb on + strandat 417.574 kb on + strand, within DDA3937_RS01875at 417.575 kb on - strand, within DDA3937_RS01875at 417.612 kb on + strand, within DDA3937_RS01875at 417.612 kb on + strand, within DDA3937_RS01875at 417.613 kb on - strand, within DDA3937_RS01875at 417.613 kb on - strand, within DDA3937_RS01875at 417.623 kb on - strand, within DDA3937_RS01875at 417.639 kb on - strand, within DDA3937_RS01875at 417.736 kb on + strand, within DDA3937_RS01875at 417.736 kb on + strand, within DDA3937_RS01875at 417.736 kb on + strand, within DDA3937_RS01875at 417.736 kb on + strand, within DDA3937_RS01875at 417.737 kb on - strand, within DDA3937_RS01875at 417.737 kb on - strand, within DDA3937_RS01875at 417.737 kb on - strand, within DDA3937_RS01875at 417.740 kb on - strand, within DDA3937_RS01875at 417.824 kb on + strand, within DDA3937_RS01875at 417.824 kb on + strand, within DDA3937_RS01875at 417.825 kb on - strand, within DDA3937_RS01875at 417.829 kb on + strand, within DDA3937_RS01875at 417.829 kb on + strand, within DDA3937_RS01875at 417.830 kb on - strand, within DDA3937_RS01875at 417.984 kb on - strand, within DDA3937_RS01875at 417.986 kb on - strand, within DDA3937_RS01875at 418.073 kb on + strand, within DDA3937_RS01875at 418.073 kb on + strand, within DDA3937_RS01875at 418.073 kb on + strand, within DDA3937_RS01875at 418.074 kb on - strand, within DDA3937_RS01875at 418.074 kb on - strand, within DDA3937_RS01875at 418.075 kb on + strand, within DDA3937_RS01875at 418.075 kb on + strand, within DDA3937_RS01875at 418.075 kb on + strand, within DDA3937_RS01875at 418.075 kb on + strand, within DDA3937_RS01875at 418.075 kb on + strand, within DDA3937_RS01875at 418.075 kb on + strand, within DDA3937_RS01875at 418.075 kb on + strand, within DDA3937_RS01875at 418.075 kb on + strand, within DDA3937_RS01875at 418.076 kb on - strand, within DDA3937_RS01875at 418.076 kb on - strand, within DDA3937_RS01875at 418.076 kb on - strand, within DDA3937_RS01875at 418.076 kb on - strand, within DDA3937_RS01875at 418.076 kb on - strand, within DDA3937_RS01875at 418.076 kb on - strand, within DDA3937_RS01875at 418.076 kb on - strand, within DDA3937_RS01875at 418.076 kb on - strand, within DDA3937_RS01875at 418.076 kb on - strand, within DDA3937_RS01875at 418.080 kb on + strand, within DDA3937_RS01875at 418.080 kb on + strand, within DDA3937_RS01875at 418.080 kb on + strand, within DDA3937_RS01875at 418.081 kb on - strand, within DDA3937_RS01875at 418.081 kb on - strand, within DDA3937_RS01875at 418.081 kb on - strand, within DDA3937_RS01875at 418.081 kb on - strand, within DDA3937_RS01875at 418.082 kb on + strand, within DDA3937_RS01875at 418.082 kb on + strand, within DDA3937_RS01875at 418.082 kb on + strand, within DDA3937_RS01875at 418.083 kb on - strand, within DDA3937_RS01875at 418.102 kb on - strand, within DDA3937_RS01875

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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415,753 - -0.2
415,870 + -1.2
415,889 + -3.1
415,916 + -0.3
415,916 + -0.4
415,917 - +1.4
415,917 - -0.1
415,917 - -0.2
415,920 + -0.4
415,920 + +0.3
415,920 + +0.1
415,920 + +0.6
415,920 + -0.1
415,920 + -0.6
415,920 + -0.1
415,920 + +5.6
415,921 - +0.7
415,921 - -0.9
415,921 - +1.8
415,921 - +0.8
415,975 + +0.3
415,975 + -1.8
415,975 + -0.9
415,975 + -0.5
415,975 + -0.3
415,976 - -1.8
415,976 - +1.1
415,976 - -0.4
415,976 - +0.4
416,071 + -0.9
416,090 + +1.1
416,112 + -1.5
416,112 + +0.1
416,112 + -0.7
416,113 - +0.3
416,113 - -0.3
416,113 - -2.6
416,113 - +1.4
416,129 - -1.1
416,164 - +0.3
416,204 + +0.8
416,205 - -0.5
416,226 + -1.2
416,278 + DDA3937_RS01865 0.19 -1.3
416,278 + DDA3937_RS01865 0.19 -1.8
416,278 + DDA3937_RS01865 0.19 +1.0
416,298 + DDA3937_RS01865 0.24 -0.5
416,298 + DDA3937_RS01865 0.24 -2.0
416,328 + DDA3937_RS01865 0.30 -1.9
416,367 - DDA3937_RS01865 0.39 +1.0
416,499 + DDA3937_RS01865 0.68 +0.2
416,499 + DDA3937_RS01865 0.68 -0.4
416,501 + DDA3937_RS01865 0.69 -0.8
416,501 + DDA3937_RS01865 0.69 +1.4
416,622 - -0.5
416,640 + -1.3
416,640 + -1.5
416,641 - +1.4
416,690 - -0.0
416,692 - +0.6
416,915 + DDA3937_RS01870 0.35 -1.8
416,915 + DDA3937_RS01870 0.35 -1.6
416,915 + DDA3937_RS01870 0.35 -3.5
416,915 + DDA3937_RS01870 0.35 -1.6
416,915 + DDA3937_RS01870 0.35 -0.0
416,916 - DDA3937_RS01870 0.35 -2.2
417,024 + DDA3937_RS01870 0.59 +2.0
417,024 + DDA3937_RS01870 0.59 -1.1
417,024 + DDA3937_RS01870 0.59 -3.0
417,025 - DDA3937_RS01870 0.59 -0.8
417,025 - DDA3937_RS01870 0.59 -0.3
417,025 - DDA3937_RS01870 0.59 -1.7
417,116 - DDA3937_RS01870 0.78 -1.9
417,158 + DDA3937_RS01870 0.88 -2.7
417,159 - DDA3937_RS01870 0.88 -1.7
417,199 + -1.3
417,199 + +1.0
417,199 + -2.7
417,200 - -0.3
417,208 + -2.1
417,209 - -1.3
417,209 - +0.3
417,473 + -1.7
417,507 - -3.2
417,521 - -0.9
417,550 + DDA3937_RS01875 0.11 -0.7
417,550 + DDA3937_RS01875 0.11 -0.7
417,551 - DDA3937_RS01875 0.11 -2.4
417,553 + DDA3937_RS01875 0.11 -1.0
417,568 + DDA3937_RS01875 0.12 -1.2
417,568 + DDA3937_RS01875 0.12 +0.3
417,568 + DDA3937_RS01875 0.12 +0.3
417,569 - DDA3937_RS01875 0.12 -1.6
417,574 + DDA3937_RS01875 0.12 -2.4
417,574 + +0.3
417,574 + DDA3937_RS01875 0.12 -1.7
417,575 - DDA3937_RS01875 0.12 -2.8
417,612 + DDA3937_RS01875 0.14 -0.4
417,612 + DDA3937_RS01875 0.14 -1.0
417,613 - DDA3937_RS01875 0.14 -1.8
417,613 - DDA3937_RS01875 0.14 -1.2
417,623 - DDA3937_RS01875 0.14 -1.8
417,639 - DDA3937_RS01875 0.15 -2.6
417,736 + DDA3937_RS01875 0.20 -1.6
417,736 + DDA3937_RS01875 0.20 -2.7
417,736 + DDA3937_RS01875 0.20 -2.3
417,736 + DDA3937_RS01875 0.20 -1.4
417,737 - DDA3937_RS01875 0.20 -0.0
417,737 - DDA3937_RS01875 0.20 -0.9
417,737 - DDA3937_RS01875 0.20 +0.5
417,740 - DDA3937_RS01875 0.20 -1.5
417,824 + DDA3937_RS01875 0.24 -1.4
417,824 + DDA3937_RS01875 0.24 -3.1
417,825 - DDA3937_RS01875 0.24 -1.8
417,829 + DDA3937_RS01875 0.24 -2.2
417,829 + DDA3937_RS01875 0.24 -0.5
417,830 - DDA3937_RS01875 0.24 -0.3
417,984 - DDA3937_RS01875 0.31 +1.3
417,986 - DDA3937_RS01875 0.31 -1.8
418,073 + DDA3937_RS01875 0.35 -1.7
418,073 + DDA3937_RS01875 0.35 -1.8
418,073 + DDA3937_RS01875 0.35 -1.2
418,074 - DDA3937_RS01875 0.35 -0.6
418,074 - DDA3937_RS01875 0.35 -0.9
418,075 + DDA3937_RS01875 0.36 -1.2
418,075 + DDA3937_RS01875 0.36 -1.2
418,075 + DDA3937_RS01875 0.36 -3.9
418,075 + DDA3937_RS01875 0.36 -1.8
418,075 + DDA3937_RS01875 0.36 -0.5
418,075 + DDA3937_RS01875 0.36 -1.1
418,075 + DDA3937_RS01875 0.36 -1.4
418,075 + DDA3937_RS01875 0.36 -1.8
418,076 - DDA3937_RS01875 0.36 -1.9
418,076 - DDA3937_RS01875 0.36 +0.0
418,076 - DDA3937_RS01875 0.36 +0.1
418,076 - DDA3937_RS01875 0.36 -2.9
418,076 - DDA3937_RS01875 0.36 -0.9
418,076 - DDA3937_RS01875 0.36 -2.6
418,076 - DDA3937_RS01875 0.36 -2.2
418,076 - DDA3937_RS01875 0.36 -2.7
418,076 - DDA3937_RS01875 0.36 -1.8
418,080 + DDA3937_RS01875 0.36 -2.2
418,080 + DDA3937_RS01875 0.36 -1.1
418,080 + DDA3937_RS01875 0.36 -1.5
418,081 - DDA3937_RS01875 0.36 -2.0
418,081 - DDA3937_RS01875 0.36 -2.6
418,081 - DDA3937_RS01875 0.36 -2.4
418,081 - DDA3937_RS01875 0.36 -0.5
418,082 + DDA3937_RS01875 0.36 -0.9
418,082 + DDA3937_RS01875 0.36 -0.3
418,082 + DDA3937_RS01875 0.36 -0.3
418,083 - DDA3937_RS01875 0.36 -1.0
418,102 - DDA3937_RS01875 0.37 -2.9

Or see this region's nucleotide sequence