Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01730 and DDA3937_RS01735 are separated by 11 nucleotides DDA3937_RS01735 and DDA3937_RS01740 are separated by 192 nucleotides DDA3937_RS01740 and DDA3937_RS01745 are separated by 403 nucleotides
DDA3937_RS01730: DDA3937_RS01730 - glutathionylspermidine synthase family protein, at 383,261 to 384,421
_RS01730
DDA3937_RS01735: DDA3937_RS01735 - DUF1190 family protein, at 384,433 to 385,194
_RS01735
DDA3937_RS01740: DDA3937_RS01740 - outer membrane channel protein TolC, at 385,387 to 386,799
_RS01740
DDA3937_RS01745: DDA3937_RS01745 - ADP-ribose diphosphatase, at 387,203 to 387,838
_RS01745
Position (kb) 385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 384.435 kb on - strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.507 kb on + strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.508 kb on - strand at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.731 kb on + strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.732 kb on - strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.906 kb on + strand, within DDA3937_RS01735 at 384.907 kb on - strand, within DDA3937_RS01735 at 384.953 kb on + strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.994 kb on - strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.995 kb on + strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 384.996 kb on - strand, within DDA3937_RS01735 at 385.058 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.101 kb on + strand, within DDA3937_RS01735 at 385.138 kb on - strand at 385.254 kb on - strand at 385.259 kb on + strand at 385.260 kb on - strand at 385.262 kb on + strand at 385.262 kb on + strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.263 kb on - strand at 385.279 kb on + strand at 385.301 kb on + strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.302 kb on - strand at 385.323 kb on + strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.324 kb on - strand at 385.395 kb on + strand at 385.491 kb on + strand at 385.605 kb on - strand, within DDA3937_RS01740 at 385.612 kb on - strand, within DDA3937_RS01740 at 385.612 kb on - strand, within DDA3937_RS01740 at 385.750 kb on - strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.910 kb on + strand, within DDA3937_RS01740 at 385.911 kb on - strand, within DDA3937_RS01740 at 386.142 kb on + strand at 386.361 kb on - strand, within DDA3937_RS01740 at 386.387 kb on - strand, within DDA3937_RS01740 at 386.396 kb on + strand, within DDA3937_RS01740 at 386.420 kb on - strand, within DDA3937_RS01740 at 386.482 kb on + strand, within DDA3937_RS01740 at 386.586 kb on - strand, within DDA3937_RS01740 at 386.586 kb on - strand, within DDA3937_RS01740 at 386.592 kb on - strand, within DDA3937_RS01740 at 386.715 kb on - strand at 386.852 kb on + strand at 386.853 kb on - strand at 386.853 kb on - strand at 386.854 kb on + strand at 386.854 kb on + strand at 386.854 kb on + strand at 386.854 kb on + strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.890 kb on - strand at 386.936 kb on + strand at 386.941 kb on + strand at 386.942 kb on - strand at 386.942 kb on - strand at 386.942 kb on - strand at 386.945 kb on + strand at 387.036 kb on + strand at 387.066 kb on - strand at 387.119 kb on - strand at 387.119 kb on - strand at 387.119 kb on - strand at 387.202 kb on + strand at 387.218 kb on - strand at 387.218 kb on - strand at 387.230 kb on - strand at 387.236 kb on - strand at 387.249 kb on + strand at 387.249 kb on + strand at 387.250 kb on - strand at 387.256 kb on + strand at 387.275 kb on + strand, within DDA3937_RS01745 at 387.275 kb on + strand, within DDA3937_RS01745 at 387.275 kb on + strand, within DDA3937_RS01745 at 387.276 kb on - strand, within DDA3937_RS01745 at 387.395 kb on + strand, within DDA3937_RS01745 at 387.395 kb on + strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.590 kb on + strand, within DDA3937_RS01745 at 387.628 kb on + strand, within DDA3937_RS01745 at 387.629 kb on - strand, within DDA3937_RS01745 at 387.629 kb on - strand, within DDA3937_RS01745 at 387.731 kb on + strand, within DDA3937_RS01745 at 387.731 kb on + strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.741 kb on + strand, within DDA3937_RS01745 at 387.742 kb on - strand, within DDA3937_RS01745 at 387.754 kb on + strand, within DDA3937_RS01745
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 384,435 - -0.5 384,507 + +2.7 384,507 + -0.7 384,507 + -0.5 384,508 - -0.8 384,508 - +0.7 384,508 - +3.3 384,731 + DDA3937_RS01735 0.39 -0.3 384,731 + DDA3937_RS01735 0.39 -1.1 384,731 + DDA3937_RS01735 0.39 +0.2 384,731 + DDA3937_RS01735 0.39 -0.3 384,731 + DDA3937_RS01735 0.39 -0.9 384,731 + DDA3937_RS01735 0.39 -0.3 384,731 + DDA3937_RS01735 0.39 +0.9 384,731 + DDA3937_RS01735 0.39 -0.2 384,731 + DDA3937_RS01735 0.39 -0.4 384,731 + DDA3937_RS01735 0.39 -1.3 384,731 + DDA3937_RS01735 0.39 +0.2 384,731 + DDA3937_RS01735 0.39 -0.7 384,731 + DDA3937_RS01735 0.39 -0.3 384,732 - DDA3937_RS01735 0.39 -0.3 384,732 - DDA3937_RS01735 0.39 -2.1 384,732 - DDA3937_RS01735 0.39 -1.8 384,732 - DDA3937_RS01735 0.39 -0.9 384,732 - DDA3937_RS01735 0.39 -0.1 384,732 - DDA3937_RS01735 0.39 -0.1 384,732 - DDA3937_RS01735 0.39 -0.3 384,732 - DDA3937_RS01735 0.39 -1.2 384,732 - DDA3937_RS01735 0.39 +0.0 384,906 + DDA3937_RS01735 0.62 +0.9 384,906 + DDA3937_RS01735 0.62 -1.8 384,907 - DDA3937_RS01735 0.62 +0.0 384,953 + DDA3937_RS01735 0.68 +0.2 384,994 - DDA3937_RS01735 0.74 -0.6 384,994 - DDA3937_RS01735 0.74 +0.0 384,995 + DDA3937_RS01735 0.74 -0.1 384,995 + DDA3937_RS01735 0.74 +0.0 384,995 + DDA3937_RS01735 0.74 -0.3 384,996 - DDA3937_RS01735 0.74 +1.3 384,996 - DDA3937_RS01735 0.74 +1.6 384,996 - DDA3937_RS01735 0.74 +0.7 384,996 - DDA3937_RS01735 0.74 -0.3 384,996 - DDA3937_RS01735 0.74 -1.0 384,996 - DDA3937_RS01735 0.74 +0.3 385,058 + DDA3937_RS01735 0.82 +0.3 385,101 + DDA3937_RS01735 0.88 -1.1 385,101 + DDA3937_RS01735 0.88 -0.1 385,138 - +1.3 385,254 - -0.3 385,259 + +0.0 385,260 - -3.2 385,262 + +0.7 385,262 + -0.7 385,263 - +0.9 385,263 - -1.1 385,263 - -0.3 385,279 + +0.0 385,301 + -1.5 385,302 - -2.2 385,302 - -0.5 385,302 - +2.7 385,323 + -0.3 385,324 - -0.2 385,324 - -0.3 385,324 - -1.1 385,395 + +0.0 385,491 + -3.1 385,605 - DDA3937_RS01740 0.15 +0.0 385,612 - DDA3937_RS01740 0.16 -0.8 385,612 - DDA3937_RS01740 0.16 -0.5 385,750 - DDA3937_RS01740 0.26 -1.0 385,910 + DDA3937_RS01740 0.37 -0.7 385,910 + DDA3937_RS01740 0.37 -1.4 385,910 + DDA3937_RS01740 0.37 -0.5 385,910 + DDA3937_RS01740 0.37 -1.3 385,910 + DDA3937_RS01740 0.37 -0.5 385,910 + DDA3937_RS01740 0.37 +0.0 385,910 + DDA3937_RS01740 0.37 -0.8 385,911 - DDA3937_RS01740 0.37 -1.4 386,142 + +1.3 386,361 - DDA3937_RS01740 0.69 -1.0 386,387 - DDA3937_RS01740 0.71 +0.6 386,396 + DDA3937_RS01740 0.71 -1.0 386,420 - DDA3937_RS01740 0.73 +0.7 386,482 + DDA3937_RS01740 0.77 +0.9 386,586 - DDA3937_RS01740 0.85 +1.7 386,586 - DDA3937_RS01740 0.85 -0.7 386,592 - DDA3937_RS01740 0.85 +0.0 386,715 - +0.8 386,852 + -1.4 386,853 - +0.5 386,853 - -1.5 386,854 + -1.3 386,854 + +0.1 386,854 + +0.3 386,854 + -1.3 386,855 - +0.6 386,855 - +0.1 386,855 - -0.8 386,855 - +1.0 386,855 - +1.0 386,855 - -1.2 386,855 - -0.5 386,855 - -1.6 386,855 - -1.2 386,855 - -0.5 386,855 - -0.7 386,855 - -0.1 386,890 - -0.1 386,936 + -1.4 386,941 + +0.7 386,942 - -0.4 386,942 - +0.1 386,942 - -0.9 386,945 + -0.6 387,036 + +1.7 387,066 - -1.3 387,119 - +1.1 387,119 - -0.4 387,119 - +0.7 387,202 + -1.1 387,218 - -0.7 387,218 - +1.3 387,230 - -1.5 387,236 - -1.7 387,249 + +0.3 387,249 + -1.8 387,250 - -0.0 387,256 + -0.5 387,275 + DDA3937_RS01745 0.11 +0.7 387,275 + DDA3937_RS01745 0.11 -0.5 387,275 + DDA3937_RS01745 0.11 -0.6 387,276 - DDA3937_RS01745 0.11 -0.9 387,395 + DDA3937_RS01745 0.30 -0.0 387,395 + DDA3937_RS01745 0.30 -2.7 387,396 - DDA3937_RS01745 0.30 -0.9 387,396 - DDA3937_RS01745 0.30 -1.7 387,396 - DDA3937_RS01745 0.30 -1.5 387,396 - DDA3937_RS01745 0.30 +1.7 387,590 + DDA3937_RS01745 0.61 -0.7 387,628 + DDA3937_RS01745 0.67 -0.3 387,629 - DDA3937_RS01745 0.67 -0.0 387,629 - DDA3937_RS01745 0.67 -0.5 387,731 + DDA3937_RS01745 0.83 +0.6 387,731 + DDA3937_RS01745 0.83 +0.5 387,732 - DDA3937_RS01745 0.83 -1.4 387,732 - DDA3937_RS01745 0.83 -1.1 387,732 - DDA3937_RS01745 0.83 -0.4 387,732 - DDA3937_RS01745 0.83 -0.5 387,732 - DDA3937_RS01745 0.83 -0.5 387,732 - DDA3937_RS01745 0.83 +0.4 387,741 + DDA3937_RS01745 0.85 -1.4 387,742 - DDA3937_RS01745 0.85 -0.7 387,754 + DDA3937_RS01745 0.87 +1.0
Or see this region's nucleotide sequence