Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01435 and DDA3937_RS01440 overlap by 4 nucleotides DDA3937_RS01440 and DDA3937_RS01445 are separated by 24 nucleotides DDA3937_RS01445 and DDA3937_RS01450 overlap by 11 nucleotides
DDA3937_RS01435: DDA3937_RS01435 - rod shape-determining protein MreC, at 320,754 to 321,890
_RS01435
DDA3937_RS01440: DDA3937_RS01440 - rod shape-determining protein MreD, at 321,887 to 322,375
_RS01440
DDA3937_RS01445: DDA3937_RS01445 - septum formation inhibitor Maf, at 322,400 to 322,993
_RS01445
DDA3937_RS01450: DDA3937_RS01450 - ribonuclease G, at 322,983 to 324,452
_RS01450
Position (kb) 322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 322.373 kb on + strand at 322.388 kb on - strand at 322.412 kb on + strand at 322.412 kb on + strand at 322.412 kb on + strand at 322.475 kb on - strand, within DDA3937_RS01445 at 322.529 kb on + strand, within DDA3937_RS01445 at 322.529 kb on + strand, within DDA3937_RS01445 at 322.529 kb on + strand, within DDA3937_RS01445 at 322.529 kb on + strand, within DDA3937_RS01445 at 322.529 kb on + strand, within DDA3937_RS01445 at 322.529 kb on + strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.530 kb on - strand, within DDA3937_RS01445 at 322.770 kb on + strand, within DDA3937_RS01445 at 322.770 kb on + strand, within DDA3937_RS01445 at 322.771 kb on - strand, within DDA3937_RS01445 at 322.802 kb on - strand at 322.802 kb on - strand, within DDA3937_RS01445 at 322.808 kb on + strand, within DDA3937_RS01445 at 322.808 kb on + strand, within DDA3937_RS01445 at 322.808 kb on + strand, within DDA3937_RS01445 at 322.808 kb on + strand, within DDA3937_RS01445 at 322.808 kb on + strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.809 kb on - strand, within DDA3937_RS01445 at 322.810 kb on + strand, within DDA3937_RS01445 at 322.847 kb on + strand, within DDA3937_RS01445 at 322.899 kb on - strand, within DDA3937_RS01445 at 323.009 kb on + strand at 323.034 kb on + strand at 323.034 kb on + strand at 323.034 kb on + strand at 323.036 kb on + strand at 323.036 kb on + strand at 323.036 kb on + strand at 323.036 kb on + strand at 323.036 kb on + strand at 323.036 kb on + strand at 323.037 kb on - strand at 323.037 kb on - strand at 323.048 kb on + strand at 323.049 kb on - strand at 323.102 kb on + strand at 323.102 kb on + strand at 323.103 kb on - strand at 323.106 kb on + strand at 323.106 kb on + strand at 323.106 kb on + strand at 323.106 kb on + strand at 323.106 kb on + strand at 323.106 kb on + strand at 323.106 kb on + strand at 323.107 kb on - strand at 323.107 kb on - strand at 323.107 kb on - strand at 323.107 kb on - strand at 323.198 kb on + strand, within DDA3937_RS01450 at 323.367 kb on + strand, within DDA3937_RS01450 at 323.414 kb on + strand, within DDA3937_RS01450 at 323.414 kb on + strand, within DDA3937_RS01450 at 323.414 kb on + strand, within DDA3937_RS01450 at 323.415 kb on - strand, within DDA3937_RS01450 at 323.463 kb on + strand, within DDA3937_RS01450 at 323.487 kb on - strand, within DDA3937_RS01450 at 323.490 kb on - strand, within DDA3937_RS01450 at 323.610 kb on + strand, within DDA3937_RS01450 at 323.610 kb on + strand, within DDA3937_RS01450 at 323.610 kb on + strand, within DDA3937_RS01450 at 323.611 kb on - strand, within DDA3937_RS01450 at 323.611 kb on - strand, within DDA3937_RS01450 at 323.697 kb on + strand, within DDA3937_RS01450 at 323.697 kb on + strand, within DDA3937_RS01450 at 323.698 kb on - strand, within DDA3937_RS01450 at 323.698 kb on - strand, within DDA3937_RS01450 at 323.727 kb on + strand, within DDA3937_RS01450 at 323.728 kb on - strand, within DDA3937_RS01450 at 323.729 kb on + strand, within DDA3937_RS01450 at 323.729 kb on + strand, within DDA3937_RS01450 at 323.729 kb on + strand, within DDA3937_RS01450 at 323.730 kb on - strand, within DDA3937_RS01450 at 323.730 kb on - strand, within DDA3937_RS01450 at 323.760 kb on + strand, within DDA3937_RS01450 at 323.760 kb on + strand, within DDA3937_RS01450 at 323.760 kb on + strand, within DDA3937_RS01450 at 323.760 kb on + strand, within DDA3937_RS01450 at 323.760 kb on + strand, within DDA3937_RS01450 at 323.760 kb on + strand, within DDA3937_RS01450 at 323.761 kb on - strand, within DDA3937_RS01450 at 323.761 kb on - strand, within DDA3937_RS01450 at 323.761 kb on - strand, within DDA3937_RS01450 at 323.761 kb on - strand, within DDA3937_RS01450 at 323.790 kb on + strand, within DDA3937_RS01450 at 323.790 kb on + strand, within DDA3937_RS01450 at 323.790 kb on + strand, within DDA3937_RS01450 at 323.791 kb on - strand, within DDA3937_RS01450 at 323.791 kb on - strand, within DDA3937_RS01450 at 323.791 kb on - strand at 323.791 kb on - strand, within DDA3937_RS01450 at 323.828 kb on + strand, within DDA3937_RS01450 at 323.828 kb on + strand, within DDA3937_RS01450 at 323.828 kb on + strand, within DDA3937_RS01450 at 323.829 kb on - strand, within DDA3937_RS01450 at 323.833 kb on + strand, within DDA3937_RS01450 at 323.833 kb on + strand, within DDA3937_RS01450 at 323.833 kb on + strand, within DDA3937_RS01450 at 323.833 kb on + strand, within DDA3937_RS01450 at 323.833 kb on + strand, within DDA3937_RS01450 at 323.834 kb on - strand, within DDA3937_RS01450 at 323.834 kb on - strand, within DDA3937_RS01450 at 323.834 kb on - strand, within DDA3937_RS01450 at 323.834 kb on - strand, within DDA3937_RS01450 at 323.834 kb on - strand, within DDA3937_RS01450 at 323.834 kb on - strand, within DDA3937_RS01450
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 322,373 + -1.0 322,388 - -1.5 322,412 + -0.5 322,412 + +2.1 322,412 + +0.1 322,475 - DDA3937_RS01445 0.13 -0.7 322,529 + DDA3937_RS01445 0.22 -0.1 322,529 + DDA3937_RS01445 0.22 -1.4 322,529 + DDA3937_RS01445 0.22 -1.2 322,529 + DDA3937_RS01445 0.22 -0.4 322,529 + DDA3937_RS01445 0.22 -0.2 322,529 + DDA3937_RS01445 0.22 -0.5 322,530 - DDA3937_RS01445 0.22 +2.8 322,530 - DDA3937_RS01445 0.22 +2.3 322,530 - DDA3937_RS01445 0.22 -1.9 322,530 - DDA3937_RS01445 0.22 -0.9 322,530 - DDA3937_RS01445 0.22 -0.2 322,530 - DDA3937_RS01445 0.22 +0.0 322,530 - DDA3937_RS01445 0.22 -0.3 322,530 - DDA3937_RS01445 0.22 -1.4 322,530 - DDA3937_RS01445 0.22 -1.4 322,530 - DDA3937_RS01445 0.22 -1.2 322,530 - DDA3937_RS01445 0.22 +1.9 322,770 + DDA3937_RS01445 0.62 -0.7 322,770 + DDA3937_RS01445 0.62 -0.6 322,771 - DDA3937_RS01445 0.62 -0.5 322,802 - +2.9 322,802 - DDA3937_RS01445 0.68 -0.6 322,808 + DDA3937_RS01445 0.69 -1.5 322,808 + DDA3937_RS01445 0.69 +0.5 322,808 + DDA3937_RS01445 0.69 -0.1 322,808 + DDA3937_RS01445 0.69 -0.3 322,808 + DDA3937_RS01445 0.69 -2.7 322,809 - DDA3937_RS01445 0.69 -0.4 322,809 - DDA3937_RS01445 0.69 -0.5 322,809 - DDA3937_RS01445 0.69 -1.2 322,809 - DDA3937_RS01445 0.69 +0.2 322,809 - DDA3937_RS01445 0.69 -0.6 322,809 - DDA3937_RS01445 0.69 -1.7 322,809 - DDA3937_RS01445 0.69 +0.2 322,809 - DDA3937_RS01445 0.69 -0.2 322,809 - DDA3937_RS01445 0.69 -1.1 322,809 - DDA3937_RS01445 0.69 +1.3 322,810 + DDA3937_RS01445 0.69 -1.0 322,847 + DDA3937_RS01445 0.75 +0.0 322,899 - DDA3937_RS01445 0.84 +1.9 323,009 + -1.1 323,034 + -0.4 323,034 + -1.0 323,034 + -0.4 323,036 + +0.1 323,036 + -2.8 323,036 + +1.3 323,036 + +1.2 323,036 + +0.7 323,036 + -1.5 323,037 - +1.2 323,037 - -0.5 323,048 + -1.7 323,049 - -0.7 323,102 + -0.7 323,102 + -0.4 323,103 - -0.7 323,106 + -0.3 323,106 + -1.0 323,106 + +0.8 323,106 + -0.5 323,106 + -0.7 323,106 + -0.7 323,106 + +0.1 323,107 - -1.0 323,107 - -1.0 323,107 - -2.0 323,107 - -1.5 323,198 + DDA3937_RS01450 0.15 -2.1 323,367 + DDA3937_RS01450 0.26 -0.7 323,414 + DDA3937_RS01450 0.29 -0.9 323,414 + DDA3937_RS01450 0.29 +1.1 323,414 + DDA3937_RS01450 0.29 +0.3 323,415 - DDA3937_RS01450 0.29 +0.9 323,463 + DDA3937_RS01450 0.33 +0.5 323,487 - DDA3937_RS01450 0.34 +0.7 323,490 - DDA3937_RS01450 0.34 +0.3 323,610 + DDA3937_RS01450 0.43 -0.5 323,610 + DDA3937_RS01450 0.43 -0.0 323,610 + DDA3937_RS01450 0.43 -0.7 323,611 - DDA3937_RS01450 0.43 +0.2 323,611 - DDA3937_RS01450 0.43 -2.3 323,697 + DDA3937_RS01450 0.49 +0.2 323,697 + DDA3937_RS01450 0.49 -0.1 323,698 - DDA3937_RS01450 0.49 -1.0 323,698 - DDA3937_RS01450 0.49 +0.1 323,727 + DDA3937_RS01450 0.51 -0.3 323,728 - DDA3937_RS01450 0.51 -0.6 323,729 + DDA3937_RS01450 0.51 -0.7 323,729 + DDA3937_RS01450 0.51 +0.4 323,729 + DDA3937_RS01450 0.51 -0.3 323,730 - DDA3937_RS01450 0.51 -1.7 323,730 - DDA3937_RS01450 0.51 -0.8 323,760 + DDA3937_RS01450 0.53 -0.4 323,760 + DDA3937_RS01450 0.53 +0.7 323,760 + DDA3937_RS01450 0.53 -0.5 323,760 + DDA3937_RS01450 0.53 +0.8 323,760 + DDA3937_RS01450 0.53 -0.3 323,760 + DDA3937_RS01450 0.53 -0.8 323,761 - DDA3937_RS01450 0.53 -0.3 323,761 - DDA3937_RS01450 0.53 +1.7 323,761 - DDA3937_RS01450 0.53 +0.9 323,761 - DDA3937_RS01450 0.53 +0.3 323,790 + DDA3937_RS01450 0.55 -0.1 323,790 + DDA3937_RS01450 0.55 -0.4 323,790 + DDA3937_RS01450 0.55 -0.7 323,791 - DDA3937_RS01450 0.55 +4.8 323,791 - DDA3937_RS01450 0.55 -0.7 323,791 - +0.0 323,791 - DDA3937_RS01450 0.55 -0.7 323,828 + DDA3937_RS01450 0.57 -0.6 323,828 + DDA3937_RS01450 0.57 -0.8 323,828 + DDA3937_RS01450 0.57 +0.6 323,829 - DDA3937_RS01450 0.58 +0.3 323,833 + DDA3937_RS01450 0.58 +1.3 323,833 + DDA3937_RS01450 0.58 -0.8 323,833 + DDA3937_RS01450 0.58 -2.9 323,833 + DDA3937_RS01450 0.58 -1.5 323,833 + DDA3937_RS01450 0.58 +0.5 323,834 - DDA3937_RS01450 0.58 -1.7 323,834 - DDA3937_RS01450 0.58 -1.9 323,834 - DDA3937_RS01450 0.58 +1.2 323,834 - DDA3937_RS01450 0.58 +0.0 323,834 - DDA3937_RS01450 0.58 -0.2 323,834 - DDA3937_RS01450 0.58 +1.1
Or see this region's nucleotide sequence