Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01120 and DDA3937_RS01125 are separated by 100 nucleotides DDA3937_RS01125 and DDA3937_RS01130 overlap by 8 nucleotides DDA3937_RS01130 and DDA3937_RS01135 are separated by 26 nucleotides
DDA3937_RS01120: DDA3937_RS01120 - PLP-dependent aminotransferase family protein, at 258,160 to 259,596
_RS01120
DDA3937_RS01125: DDA3937_RS01125 - molybdopterin-dependent oxidoreductase, at 259,697 to 260,464
_RS01125
DDA3937_RS01130: DDA3937_RS01130 - cytochrome b/b6 domain-containing protein, at 260,457 to 261,059
_RS01130
DDA3937_RS01135: DDA3937_RS01135 - hypothetical protein, at 261,086 to 261,709
_RS01135
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 258.738 kb on + strand, within DDA3937_RS01120 at 258.749 kb on + strand, within DDA3937_RS01120 at 258.749 kb on + strand, within DDA3937_RS01120 at 258.750 kb on - strand, within DDA3937_RS01120 at 258.894 kb on + strand, within DDA3937_RS01120 at 258.895 kb on - strand, within DDA3937_RS01120 at 259.006 kb on + strand, within DDA3937_RS01120 at 259.006 kb on + strand, within DDA3937_RS01120 at 259.006 kb on + strand, within DDA3937_RS01120 at 259.007 kb on - strand, within DDA3937_RS01120 at 259.171 kb on + strand at 259.171 kb on + strand, within DDA3937_RS01120 at 259.172 kb on - strand, within DDA3937_RS01120 at 259.172 kb on - strand, within DDA3937_RS01120 at 259.240 kb on + strand, within DDA3937_RS01120 at 259.241 kb on - strand, within DDA3937_RS01120 at 259.273 kb on + strand, within DDA3937_RS01120 at 259.273 kb on + strand, within DDA3937_RS01120 at 259.273 kb on + strand, within DDA3937_RS01120 at 259.281 kb on + strand, within DDA3937_RS01120 at 259.281 kb on + strand, within DDA3937_RS01120 at 259.282 kb on - strand, within DDA3937_RS01120 at 259.282 kb on - strand, within DDA3937_RS01120 at 259.282 kb on - strand, within DDA3937_RS01120 at 259.282 kb on - strand, within DDA3937_RS01120 at 259.282 kb on - strand, within DDA3937_RS01120 at 259.282 kb on - strand, within DDA3937_RS01120 at 259.316 kb on - strand, within DDA3937_RS01120 at 259.316 kb on - strand, within DDA3937_RS01120 at 259.329 kb on + strand, within DDA3937_RS01120 at 259.329 kb on + strand, within DDA3937_RS01120 at 259.329 kb on + strand, within DDA3937_RS01120 at 259.329 kb on + strand, within DDA3937_RS01120 at 259.329 kb on + strand, within DDA3937_RS01120 at 259.330 kb on - strand, within DDA3937_RS01120 at 259.330 kb on - strand, within DDA3937_RS01120 at 259.330 kb on - strand, within DDA3937_RS01120 at 259.339 kb on - strand, within DDA3937_RS01120 at 259.364 kb on + strand, within DDA3937_RS01120 at 259.425 kb on + strand, within DDA3937_RS01120 at 259.426 kb on - strand, within DDA3937_RS01120 at 259.471 kb on + strand at 259.471 kb on + strand at 259.488 kb on + strand at 259.488 kb on + strand at 259.489 kb on - strand at 259.489 kb on - strand at 259.489 kb on - strand at 259.521 kb on - strand at 259.521 kb on - strand at 259.575 kb on + strand at 259.576 kb on - strand at 259.576 kb on - strand at 259.576 kb on - strand at 259.576 kb on - strand at 259.594 kb on + strand at 259.625 kb on + strand at 259.703 kb on - strand at 259.703 kb on - strand at 259.717 kb on + strand at 259.719 kb on + strand at 259.719 kb on + strand at 259.720 kb on - strand at 259.907 kb on - strand, within DDA3937_RS01125 at 259.920 kb on + strand, within DDA3937_RS01125 at 259.921 kb on - strand, within DDA3937_RS01125 at 259.921 kb on - strand, within DDA3937_RS01125 at 259.939 kb on + strand, within DDA3937_RS01125 at 259.940 kb on - strand, within DDA3937_RS01125 at 259.950 kb on + strand, within DDA3937_RS01125 at 259.950 kb on + strand, within DDA3937_RS01125 at 259.950 kb on + strand, within DDA3937_RS01125 at 259.975 kb on + strand, within DDA3937_RS01125 at 260.139 kb on + strand, within DDA3937_RS01125 at 260.140 kb on - strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.152 kb on - strand, within DDA3937_RS01125 at 260.152 kb on - strand, within DDA3937_RS01125 at 260.152 kb on - strand, within DDA3937_RS01125 at 260.152 kb on - strand, within DDA3937_RS01125 at 260.163 kb on - strand, within DDA3937_RS01125 at 260.169 kb on + strand, within DDA3937_RS01125 at 260.169 kb on + strand, within DDA3937_RS01125 at 260.179 kb on - strand, within DDA3937_RS01125 at 260.181 kb on + strand, within DDA3937_RS01125 at 260.181 kb on + strand, within DDA3937_RS01125 at 260.181 kb on + strand, within DDA3937_RS01125 at 260.181 kb on + strand, within DDA3937_RS01125 at 260.182 kb on - strand, within DDA3937_RS01125 at 260.182 kb on - strand, within DDA3937_RS01125 at 260.188 kb on + strand, within DDA3937_RS01125 at 260.189 kb on - strand, within DDA3937_RS01125 at 260.189 kb on - strand, within DDA3937_RS01125 at 260.252 kb on + strand, within DDA3937_RS01125 at 260.294 kb on + strand, within DDA3937_RS01125 at 260.295 kb on - strand, within DDA3937_RS01125 at 260.326 kb on + strand, within DDA3937_RS01125 at 260.326 kb on + strand at 260.327 kb on - strand, within DDA3937_RS01125 at 260.430 kb on - strand at 260.573 kb on - strand, within DDA3937_RS01130 at 260.573 kb on - strand, within DDA3937_RS01130 at 260.598 kb on + strand, within DDA3937_RS01130 at 260.599 kb on - strand, within DDA3937_RS01130 at 260.599 kb on - strand, within DDA3937_RS01130 at 260.599 kb on - strand, within DDA3937_RS01130 at 260.599 kb on - strand, within DDA3937_RS01130 at 260.661 kb on + strand, within DDA3937_RS01130 at 260.661 kb on + strand, within DDA3937_RS01130 at 260.661 kb on + strand, within DDA3937_RS01130 at 260.662 kb on - strand, within DDA3937_RS01130 at 260.662 kb on - strand, within DDA3937_RS01130 at 260.662 kb on - strand, within DDA3937_RS01130 at 260.686 kb on + strand, within DDA3937_RS01130 at 260.686 kb on + strand, within DDA3937_RS01130 at 260.687 kb on - strand, within DDA3937_RS01130 at 260.687 kb on - strand, within DDA3937_RS01130 at 260.708 kb on + strand, within DDA3937_RS01130 at 260.708 kb on + strand, within DDA3937_RS01130 at 260.708 kb on + strand, within DDA3937_RS01130 at 260.708 kb on + strand, within DDA3937_RS01130 at 260.709 kb on - strand, within DDA3937_RS01130 at 260.709 kb on - strand, within DDA3937_RS01130 at 260.710 kb on + strand, within DDA3937_RS01130 at 260.710 kb on + strand, within DDA3937_RS01130 at 260.710 kb on + strand, within DDA3937_RS01130 at 260.711 kb on - strand, within DDA3937_RS01130 at 260.716 kb on + strand, within DDA3937_RS01130 at 260.717 kb on - strand, within DDA3937_RS01130 at 260.766 kb on + strand, within DDA3937_RS01130 at 260.767 kb on - strand, within DDA3937_RS01130 at 260.767 kb on - strand, within DDA3937_RS01130 at 260.826 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.834 kb on - strand, within DDA3937_RS01130 at 260.834 kb on - strand, within DDA3937_RS01130 at 260.834 kb on - strand, within DDA3937_RS01130 at 260.834 kb on - strand, within DDA3937_RS01130 at 260.883 kb on + strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.954 kb on + strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.975 kb on + strand, within DDA3937_RS01130 at 260.976 kb on - strand, within DDA3937_RS01130 at 260.976 kb on - strand, within DDA3937_RS01130 at 260.976 kb on - strand, within DDA3937_RS01130 at 260.998 kb on - strand, within DDA3937_RS01130 at 260.998 kb on - strand, within DDA3937_RS01130 at 260.998 kb on - strand, within DDA3937_RS01130 at 261.087 kb on + strand at 261.217 kb on + strand, within DDA3937_RS01135 at 261.217 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.314 kb on + strand, within DDA3937_RS01135 at 261.457 kb on + strand, within DDA3937_RS01135
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 258,738 + DDA3937_RS01120 0.40 +1.6 258,749 + DDA3937_RS01120 0.41 -1.1 258,749 + DDA3937_RS01120 0.41 -1.0 258,750 - DDA3937_RS01120 0.41 -0.4 258,894 + DDA3937_RS01120 0.51 +1.0 258,895 - DDA3937_RS01120 0.51 +0.4 259,006 + DDA3937_RS01120 0.59 -0.3 259,006 + DDA3937_RS01120 0.59 -1.5 259,006 + DDA3937_RS01120 0.59 +0.3 259,007 - DDA3937_RS01120 0.59 -0.1 259,171 + +0.1 259,171 + DDA3937_RS01120 0.70 -0.4 259,172 - DDA3937_RS01120 0.70 -0.1 259,172 - DDA3937_RS01120 0.70 -0.8 259,240 + DDA3937_RS01120 0.75 +0.6 259,241 - DDA3937_RS01120 0.75 +0.4 259,273 + DDA3937_RS01120 0.77 +0.4 259,273 + DDA3937_RS01120 0.77 +0.1 259,273 + DDA3937_RS01120 0.77 +0.5 259,281 + DDA3937_RS01120 0.78 -1.1 259,281 + DDA3937_RS01120 0.78 -0.8 259,282 - DDA3937_RS01120 0.78 -0.6 259,282 - DDA3937_RS01120 0.78 +0.2 259,282 - DDA3937_RS01120 0.78 -0.8 259,282 - DDA3937_RS01120 0.78 -0.6 259,282 - DDA3937_RS01120 0.78 -0.8 259,282 - DDA3937_RS01120 0.78 -2.1 259,316 - DDA3937_RS01120 0.80 +0.2 259,316 - DDA3937_RS01120 0.80 +1.4 259,329 + DDA3937_RS01120 0.81 +0.4 259,329 + DDA3937_RS01120 0.81 -1.1 259,329 + DDA3937_RS01120 0.81 -0.9 259,329 + DDA3937_RS01120 0.81 -0.4 259,329 + DDA3937_RS01120 0.81 -0.6 259,330 - DDA3937_RS01120 0.81 +0.0 259,330 - DDA3937_RS01120 0.81 -0.4 259,330 - DDA3937_RS01120 0.81 -0.9 259,339 - DDA3937_RS01120 0.82 +1.1 259,364 + DDA3937_RS01120 0.84 -0.1 259,425 + DDA3937_RS01120 0.88 -0.6 259,426 - DDA3937_RS01120 0.88 +2.7 259,471 + +0.5 259,471 + -1.4 259,488 + -1.4 259,488 + -1.9 259,489 - -1.1 259,489 - -0.4 259,489 - +0.1 259,521 - +4.1 259,521 - +0.1 259,575 + -0.2 259,576 - -1.0 259,576 - +0.3 259,576 - +2.0 259,576 - -0.2 259,594 + -0.9 259,625 + +1.2 259,703 - -1.5 259,703 - -1.4 259,717 + +8.2 259,719 + +0.6 259,719 + -0.5 259,720 - -0.9 259,907 - DDA3937_RS01125 0.27 -1.3 259,920 + DDA3937_RS01125 0.29 -0.7 259,921 - DDA3937_RS01125 0.29 -1.5 259,921 - DDA3937_RS01125 0.29 -0.1 259,939 + DDA3937_RS01125 0.32 -0.2 259,940 - DDA3937_RS01125 0.32 -0.1 259,950 + DDA3937_RS01125 0.33 -1.5 259,950 + DDA3937_RS01125 0.33 +0.4 259,950 + DDA3937_RS01125 0.33 -1.2 259,975 + DDA3937_RS01125 0.36 -0.2 260,139 + DDA3937_RS01125 0.58 -1.0 260,140 - DDA3937_RS01125 0.58 -1.3 260,151 + DDA3937_RS01125 0.59 -1.7 260,151 + DDA3937_RS01125 0.59 +0.5 260,151 + DDA3937_RS01125 0.59 -1.8 260,151 + DDA3937_RS01125 0.59 -0.9 260,151 + DDA3937_RS01125 0.59 -0.1 260,151 + DDA3937_RS01125 0.59 -2.8 260,151 + DDA3937_RS01125 0.59 +1.2 260,151 + DDA3937_RS01125 0.59 -1.6 260,151 + DDA3937_RS01125 0.59 -0.7 260,151 + DDA3937_RS01125 0.59 -0.2 260,152 - DDA3937_RS01125 0.59 -0.3 260,152 - DDA3937_RS01125 0.59 -0.5 260,152 - DDA3937_RS01125 0.59 -0.4 260,152 - DDA3937_RS01125 0.59 +1.4 260,163 - DDA3937_RS01125 0.61 +1.9 260,169 + DDA3937_RS01125 0.61 -2.4 260,169 + DDA3937_RS01125 0.61 -0.1 260,179 - DDA3937_RS01125 0.63 +0.4 260,181 + DDA3937_RS01125 0.63 -0.4 260,181 + DDA3937_RS01125 0.63 +2.4 260,181 + DDA3937_RS01125 0.63 -3.0 260,181 + DDA3937_RS01125 0.63 +0.7 260,182 - DDA3937_RS01125 0.63 +2.5 260,182 - DDA3937_RS01125 0.63 +0.4 260,188 + DDA3937_RS01125 0.64 -1.0 260,189 - DDA3937_RS01125 0.64 +0.2 260,189 - DDA3937_RS01125 0.64 -0.9 260,252 + DDA3937_RS01125 0.72 -0.2 260,294 + DDA3937_RS01125 0.78 -0.4 260,295 - DDA3937_RS01125 0.78 +0.3 260,326 + DDA3937_RS01125 0.82 -0.3 260,326 + +2.0 260,327 - DDA3937_RS01125 0.82 -1.4 260,430 - +0.6 260,573 - DDA3937_RS01130 0.19 -2.1 260,573 - DDA3937_RS01130 0.19 -0.9 260,598 + DDA3937_RS01130 0.23 +1.4 260,599 - DDA3937_RS01130 0.24 +3.7 260,599 - DDA3937_RS01130 0.24 -0.5 260,599 - DDA3937_RS01130 0.24 +0.8 260,599 - DDA3937_RS01130 0.24 -0.9 260,661 + DDA3937_RS01130 0.34 +0.4 260,661 + DDA3937_RS01130 0.34 -0.0 260,661 + DDA3937_RS01130 0.34 -1.9 260,662 - DDA3937_RS01130 0.34 +0.7 260,662 - DDA3937_RS01130 0.34 -0.7 260,662 - DDA3937_RS01130 0.34 -0.7 260,686 + DDA3937_RS01130 0.38 -0.8 260,686 + DDA3937_RS01130 0.38 -0.3 260,687 - DDA3937_RS01130 0.38 +3.3 260,687 - DDA3937_RS01130 0.38 -0.7 260,708 + DDA3937_RS01130 0.42 +0.1 260,708 + DDA3937_RS01130 0.42 -0.0 260,708 + DDA3937_RS01130 0.42 +1.2 260,708 + DDA3937_RS01130 0.42 +0.2 260,709 - DDA3937_RS01130 0.42 +0.5 260,709 - DDA3937_RS01130 0.42 -1.1 260,710 + DDA3937_RS01130 0.42 -0.3 260,710 + DDA3937_RS01130 0.42 -0.9 260,710 + DDA3937_RS01130 0.42 +1.0 260,711 - DDA3937_RS01130 0.42 -0.2 260,716 + DDA3937_RS01130 0.43 +1.1 260,717 - DDA3937_RS01130 0.43 +0.4 260,766 + DDA3937_RS01130 0.51 -1.0 260,767 - DDA3937_RS01130 0.51 -2.2 260,767 - DDA3937_RS01130 0.51 -0.8 260,826 + DDA3937_RS01130 0.61 -1.5 260,833 + DDA3937_RS01130 0.62 -0.9 260,833 + DDA3937_RS01130 0.62 -0.4 260,833 + DDA3937_RS01130 0.62 +1.7 260,833 + DDA3937_RS01130 0.62 -1.5 260,833 + DDA3937_RS01130 0.62 -1.6 260,833 + DDA3937_RS01130 0.62 -3.5 260,833 + DDA3937_RS01130 0.62 +0.8 260,833 + DDA3937_RS01130 0.62 +1.1 260,834 - DDA3937_RS01130 0.63 +0.4 260,834 - DDA3937_RS01130 0.63 +0.4 260,834 - DDA3937_RS01130 0.63 -0.8 260,834 - DDA3937_RS01130 0.63 -0.1 260,883 + DDA3937_RS01130 0.71 -0.5 260,916 - DDA3937_RS01130 0.76 -2.9 260,916 - DDA3937_RS01130 0.76 -0.7 260,916 - DDA3937_RS01130 0.76 +0.3 260,916 - DDA3937_RS01130 0.76 -1.4 260,954 + DDA3937_RS01130 0.82 +0.1 260,957 - DDA3937_RS01130 0.83 -0.9 260,957 - DDA3937_RS01130 0.83 -0.2 260,957 - DDA3937_RS01130 0.83 +2.5 260,957 - DDA3937_RS01130 0.83 +0.1 260,975 + DDA3937_RS01130 0.86 +0.6 260,976 - DDA3937_RS01130 0.86 +1.2 260,976 - DDA3937_RS01130 0.86 -0.4 260,976 - DDA3937_RS01130 0.86 -0.9 260,998 - DDA3937_RS01130 0.90 -1.9 260,998 - DDA3937_RS01130 0.90 +0.1 260,998 - DDA3937_RS01130 0.90 -0.4 261,087 + -0.4 261,217 + DDA3937_RS01135 0.21 +1.1 261,217 + DDA3937_RS01135 0.21 +0.2 261,270 + DDA3937_RS01135 0.29 +0.6 261,270 + DDA3937_RS01135 0.29 -0.4 261,270 + DDA3937_RS01135 0.29 +1.4 261,270 + DDA3937_RS01135 0.29 +0.2 261,271 - DDA3937_RS01135 0.30 -0.9 261,271 - DDA3937_RS01135 0.30 -1.5 261,271 - DDA3937_RS01135 0.30 +0.1 261,271 - DDA3937_RS01135 0.30 -0.4 261,271 - DDA3937_RS01135 0.30 +0.4 261,314 + DDA3937_RS01135 0.37 -1.1 261,457 + DDA3937_RS01135 0.59 -0.5
Or see this region's nucleotide sequence