Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01045 and DDA3937_RS01050 are separated by 17 nucleotides DDA3937_RS01050 and DDA3937_RS01055 are separated by 303 nucleotides DDA3937_RS01055 and DDA3937_RS01060 are separated by 9 nucleotides DDA3937_RS01060 and DDA3937_RS01065 are separated by 106 nucleotides DDA3937_RS01065 and DDA3937_RS01070 are separated by 234 nucleotides DDA3937_RS01070 and DDA3937_RS01075 are separated by 1 nucleotides
DDA3937_RS01045: DDA3937_RS01045 - tRNA-Thr, at 241,227 to 241,302
_RS01045
DDA3937_RS01050: DDA3937_RS01050 - tRNA-Tyr, at 241,320 to 241,404
_RS01050
DDA3937_RS01055: DDA3937_RS01055 - tRNA-Gly, at 241,708 to 241,782
_RS01055
DDA3937_RS01060: DDA3937_RS01060 - tRNA-Thr, at 241,792 to 241,867
_RS01060
DDA3937_RS01065: DDA3937_RS01065 - elongation factor Tu, at 241,974 to 243,158
_RS01065
DDA3937_RS01070: DDA3937_RS01070 - preprotein translocase subunit SecE, at 243,393 to 243,776
_RS01070
DDA3937_RS01075: DDA3937_RS01075 - transcription termination/antitermination protein NusG, at 243,778 to 244,323
_RS01075
Position (kb) 241
242
243
244 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 240.989 kb on - strand at 240.989 kb on - strand at 241.008 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.009 kb on + strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.010 kb on - strand at 241.030 kb on + strand at 241.030 kb on + strand at 241.030 kb on + strand at 241.030 kb on + strand at 241.031 kb on - strand at 241.031 kb on - strand at 241.031 kb on - strand at 241.060 kb on + strand at 241.078 kb on - strand at 241.096 kb on + strand at 241.097 kb on - strand at 241.115 kb on + strand at 241.116 kb on - strand at 241.116 kb on - strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.118 kb on + strand at 241.119 kb on - strand at 241.119 kb on - strand at 241.119 kb on - strand at 241.516 kb on + strand at 241.593 kb on + strand at 241.650 kb on + strand at 241.652 kb on + strand at 241.669 kb on + strand at 241.669 kb on + strand at 241.785 kb on + strand at 241.785 kb on + strand at 241.786 kb on - strand at 241.799 kb on + strand at 241.916 kb on - strand at 241.980 kb on - strand at 242.626 kb on + strand, within DDA3937_RS01065 at 242.626 kb on + strand, within DDA3937_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 240,989 - -1.1 240,989 - +1.8 241,008 + +0.2 241,009 + +1.4 241,009 + +1.4 241,009 + -1.2 241,009 + +0.4 241,009 + -0.1 241,009 + -0.2 241,009 + -0.1 241,009 + -1.1 241,009 + -0.6 241,009 + +0.1 241,009 + -0.9 241,009 + -0.6 241,009 + +1.1 241,009 + +1.0 241,009 + -0.8 241,009 + -0.8 241,009 + -1.7 241,009 + -1.6 241,010 - +1.4 241,010 - -0.3 241,010 - +0.2 241,010 - -0.6 241,010 - -0.4 241,010 - -1.4 241,010 - -1.5 241,010 - +5.1 241,010 - -0.5 241,010 - +0.4 241,010 - -1.2 241,010 - +0.9 241,010 - +2.1 241,010 - +6.6 241,030 + -0.4 241,030 + +0.4 241,030 + +1.3 241,030 + +1.2 241,031 - -1.0 241,031 - -0.3 241,031 - +2.0 241,060 + +0.9 241,078 - -0.3 241,096 + -0.1 241,097 - -0.6 241,115 + +0.1 241,116 - +7.8 241,116 - +8.9 241,118 + -1.3 241,118 + -0.7 241,118 + +0.8 241,118 + +1.3 241,118 + -0.2 241,118 + -1.3 241,118 + -0.6 241,118 + -2.6 241,118 + +0.4 241,119 - -0.8 241,119 - -0.4 241,119 - +0.4 241,516 + +8.6 241,593 + +0.1 241,650 + -0.6 241,652 + +0.4 241,669 + +0.1 241,669 + -1.5 241,785 + +2.4 241,785 + -1.1 241,786 - -1.9 241,799 + -1.2 241,916 - +0.1 241,980 - -0.8 242,626 + DDA3937_RS01065 0.55 -0.9 242,626 + DDA3937_RS01065 0.55 -1.1
Or see this region's nucleotide sequence