Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00935 and DDA3937_RS00940 are separated by 275 nucleotides DDA3937_RS00940 and DDA3937_RS00945 are separated by 116 nucleotides DDA3937_RS00945 and DDA3937_RS00950 are separated by 188 nucleotides
DDA3937_RS00935: DDA3937_RS00935 - primosomal protein N', at 214,389 to 216,587
_RS00935
DDA3937_RS00940: DDA3937_RS00940 - 50S ribosomal protein L31, at 216,863 to 217,078
_RS00940
DDA3937_RS00945: DDA3937_RS00945 - met regulon transcriptional regulator MetJ, at 217,195 to 217,512
_RS00945
DDA3937_RS00950: DDA3937_RS00950 - cystathionine gamma-synthase, at 217,701 to 218,861
_RS00950
Position (kb) 217
218 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 216.620 kb on + strand at 216.620 kb on + strand at 216.620 kb on + strand at 216.620 kb on + strand at 216.620 kb on + strand at 216.620 kb on + strand at 216.620 kb on + strand at 216.620 kb on + strand at 216.621 kb on - strand at 216.621 kb on - strand at 216.621 kb on - strand at 216.621 kb on - strand at 216.621 kb on - strand at 216.621 kb on - strand at 216.621 kb on - strand at 216.621 kb on - strand at 216.621 kb on - strand at 216.654 kb on + strand at 216.655 kb on - strand at 216.698 kb on + strand at 217.200 kb on - strand at 217.236 kb on + strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.237 kb on - strand, within DDA3937_RS00945 at 217.567 kb on - strand at 217.579 kb on + strand at 217.580 kb on - strand at 217.580 kb on - strand at 217.583 kb on - strand at 217.584 kb on + strand at 217.585 kb on - strand at 217.585 kb on - strand at 217.670 kb on + strand at 217.670 kb on + strand at 217.670 kb on + strand at 217.671 kb on - strand at 217.719 kb on - strand at 217.721 kb on + strand at 217.722 kb on - strand at 217.722 kb on - strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.797 kb on + strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.798 kb on - strand at 217.800 kb on - strand at 217.800 kb on - strand at 217.814 kb on + strand at 217.815 kb on - strand at 217.836 kb on + strand, within DDA3937_RS00950 at 217.836 kb on + strand, within DDA3937_RS00950 at 217.837 kb on - strand, within DDA3937_RS00950 at 217.928 kb on + strand, within DDA3937_RS00950 at 217.928 kb on + strand, within DDA3937_RS00950 at 217.929 kb on - strand, within DDA3937_RS00950 at 217.929 kb on - strand, within DDA3937_RS00950 at 217.929 kb on - strand, within DDA3937_RS00950 at 217.952 kb on + strand, within DDA3937_RS00950 at 218.001 kb on + strand, within DDA3937_RS00950 at 218.013 kb on + strand, within DDA3937_RS00950 at 218.014 kb on - strand, within DDA3937_RS00950 at 218.049 kb on + strand, within DDA3937_RS00950 at 218.231 kb on + strand at 218.231 kb on + strand, within DDA3937_RS00950 at 218.296 kb on - strand, within DDA3937_RS00950 at 218.296 kb on - strand, within DDA3937_RS00950 at 218.296 kb on - strand, within DDA3937_RS00950 at 218.384 kb on + strand, within DDA3937_RS00950 at 218.384 kb on + strand, within DDA3937_RS00950 at 218.384 kb on + strand, within DDA3937_RS00950 at 218.385 kb on - strand, within DDA3937_RS00950 at 218.415 kb on + strand, within DDA3937_RS00950 at 218.415 kb on + strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.416 kb on - strand, within DDA3937_RS00950 at 218.453 kb on + strand, within DDA3937_RS00950 at 218.454 kb on - strand, within DDA3937_RS00950 at 218.493 kb on + strand, within DDA3937_RS00950 at 218.493 kb on + strand, within DDA3937_RS00950 at 218.493 kb on + strand, within DDA3937_RS00950
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 216,620 + -1.3 216,620 + +0.4 216,620 + +0.2 216,620 + -0.0 216,620 + -1.3 216,620 + -0.8 216,620 + -0.2 216,620 + +1.4 216,621 - +1.6 216,621 - +0.8 216,621 - -1.2 216,621 - +3.8 216,621 - -0.3 216,621 - +0.0 216,621 - -1.2 216,621 - -0.5 216,621 - +0.1 216,654 + -1.8 216,655 - -0.4 216,698 + +1.4 217,200 - -0.3 217,236 + DDA3937_RS00945 0.13 -1.8 217,237 - DDA3937_RS00945 0.13 -1.3 217,237 - DDA3937_RS00945 0.13 -0.8 217,237 - DDA3937_RS00945 0.13 +0.6 217,237 - DDA3937_RS00945 0.13 -1.4 217,237 - DDA3937_RS00945 0.13 +0.6 217,567 - +2.4 217,579 + +0.0 217,580 - -0.3 217,580 - -0.9 217,583 - -0.8 217,584 + -0.1 217,585 - -1.2 217,585 - +0.2 217,670 + -0.4 217,670 + -0.7 217,670 + -0.7 217,671 - -0.1 217,719 - +1.0 217,721 + +0.1 217,722 - +1.4 217,722 - -0.1 217,797 + -1.1 217,797 + -0.3 217,797 + -0.3 217,797 + +0.7 217,797 + -1.3 217,797 + -0.0 217,797 + -0.4 217,797 + +4.3 217,798 - -1.1 217,798 - -0.5 217,798 - -1.1 217,798 - -1.1 217,798 - -1.9 217,798 - -1.7 217,798 - +1.0 217,798 - -1.0 217,800 - -1.1 217,800 - -1.1 217,814 + +0.4 217,815 - -1.6 217,836 + DDA3937_RS00950 0.12 -2.2 217,836 + DDA3937_RS00950 0.12 -1.2 217,837 - DDA3937_RS00950 0.12 -0.4 217,928 + DDA3937_RS00950 0.20 -1.0 217,928 + DDA3937_RS00950 0.20 -0.6 217,929 - DDA3937_RS00950 0.20 -0.9 217,929 - DDA3937_RS00950 0.20 +0.4 217,929 - DDA3937_RS00950 0.20 -0.8 217,952 + DDA3937_RS00950 0.22 -0.5 218,001 + DDA3937_RS00950 0.26 -0.6 218,013 + DDA3937_RS00950 0.27 -2.1 218,014 - DDA3937_RS00950 0.27 -1.0 218,049 + DDA3937_RS00950 0.30 -0.6 218,231 + +0.8 218,231 + DDA3937_RS00950 0.46 -0.6 218,296 - DDA3937_RS00950 0.51 -2.8 218,296 - DDA3937_RS00950 0.51 -0.5 218,296 - DDA3937_RS00950 0.51 +0.4 218,384 + DDA3937_RS00950 0.59 -0.8 218,384 + DDA3937_RS00950 0.59 +0.7 218,384 + DDA3937_RS00950 0.59 +1.4 218,385 - DDA3937_RS00950 0.59 -1.3 218,415 + DDA3937_RS00950 0.61 +0.8 218,415 + DDA3937_RS00950 0.61 -0.8 218,416 - DDA3937_RS00950 0.62 -0.3 218,416 - DDA3937_RS00950 0.62 -0.3 218,416 - DDA3937_RS00950 0.62 -0.6 218,416 - DDA3937_RS00950 0.62 -0.3 218,416 - DDA3937_RS00950 0.62 -0.8 218,453 + DDA3937_RS00950 0.65 -1.4 218,454 - DDA3937_RS00950 0.65 -0.5 218,493 + DDA3937_RS00950 0.68 -0.1 218,493 + DDA3937_RS00950 0.68 -0.6 218,493 + DDA3937_RS00950 0.68 -0.3
Or see this region's nucleotide sequence