Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20820

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,728,974	+		DDA3937_RS20815	0.27	+1.1
4,728,974	+		DDA3937_RS20815	0.27	+1.3
4,728,974	+		DDA3937_RS20815	0.27	+0.9
4,729,067	-		DDA3937_RS20815	0.34	+0.8
4,729,154	+		DDA3937_RS20815	0.41	+3.0
4,729,154	+		DDA3937_RS20815	0.41	+0.0
4,729,302	+		DDA3937_RS20815	0.52	+1.0
4,729,302	+		DDA3937_RS20815	0.52	+0.8
4,729,303	-		DDA3937_RS20815	0.52	+0.8
4,729,303	-		DDA3937_RS20815	0.52	-0.4
4,729,303	-		DDA3937_RS20815	0.52	+1.6
4,729,500	-		DDA3937_RS20815	0.67	-0.8
4,729,500	-		DDA3937_RS20815	0.67	+1.1
4,729,544	+		DDA3937_RS20815	0.70	+1.5
4,729,545	-		DDA3937_RS20815	0.70	+1.8
4,729,550	+		DDA3937_RS20815	0.71	+0.8
4,729,550	+		DDA3937_RS20815	0.71	+1.6
4,729,551	-		DDA3937_RS20815	0.71	+0.6
4,729,560	+		DDA3937_RS20815	0.72	+1.2
4,729,561	-		DDA3937_RS20815	0.72	+0.0
4,729,561	-		DDA3937_RS20815	0.72	+1.6
4,729,576	+		DDA3937_RS20815	0.73	+2.0
4,729,576	+		DDA3937_RS20815	0.73	+1.3
4,729,576	+		DDA3937_RS20815	0.73	+1.7
4,729,576	+		DDA3937_RS20815	0.73	+0.9
4,729,576	+		DDA3937_RS20815	0.73	+1.2
4,729,576	+		DDA3937_RS20815	0.73	+1.3
4,729,576	+		DDA3937_RS20815	0.73	+1.6
4,729,576	+		DDA3937_RS20815	0.73	+0.8
4,729,576	+		DDA3937_RS20815	0.73	+0.9
4,729,576	+		DDA3937_RS20815	0.73	+1.3
4,729,576	+		DDA3937_RS20815	0.73	+0.8
4,729,576	+		DDA3937_RS20815	0.73	+0.9
4,729,576	+		DDA3937_RS20815	0.73	+1.1
4,729,576	+		DDA3937_RS20815	0.73	-0.9
4,729,577	-		DDA3937_RS20815	0.73	+1.2
4,729,577	-		DDA3937_RS20815	0.73	+0.9
4,729,577	-		DDA3937_RS20815	0.73	+1.4
4,729,577	-		DDA3937_RS20815	0.73	+1.9
4,729,577	-		DDA3937_RS20815	0.73	+1.5
4,729,577	-		DDA3937_RS20815	0.73	+0.1
4,729,577	-		DDA3937_RS20815	0.73	+0.5
4,729,577	-		DDA3937_RS20815	0.73	+0.2
4,729,577	-		DDA3937_RS20815	0.73	+1.3
4,729,577	-		DDA3937_RS20815	0.73	+0.9
4,729,577	-		DDA3937_RS20815	0.73	+2.1
4,729,577	-		DDA3937_RS20815	0.73	+1.3
4,729,577	-		DDA3937_RS20815	0.73	-0.2
4,729,577	-		DDA3937_RS20815	0.73	+0.9
4,729,577	-		DDA3937_RS20815	0.73	+0.2
4,729,577	-				+3.5
4,729,577	-		DDA3937_RS20815	0.73	+1.8
4,729,577	-		DDA3937_RS20815	0.73	+0.7
4,729,577	-		DDA3937_RS20815	0.73	+0.2
4,729,577	-		DDA3937_RS20815	0.73	+1.0
4,729,577	-		DDA3937_RS20815	0.73	+1.2
4,729,577	-		DDA3937_RS20815	0.73	+1.2
4,729,577	-		DDA3937_RS20815	0.73	+1.6
4,729,579	+		DDA3937_RS20815	0.73	+2.1
4,729,579	+		DDA3937_RS20815	0.73	+0.6
4,729,579	+		DDA3937_RS20815	0.73	+1.7
4,729,579	+		DDA3937_RS20815	0.73	+2.3
4,729,579	+		DDA3937_RS20815	0.73	+2.5
4,729,579	+		DDA3937_RS20815	0.73	+0.4
4,729,579	+		DDA3937_RS20815	0.73	+1.5
4,729,579	+		DDA3937_RS20815	0.73	+0.5
4,729,579	+		DDA3937_RS20815	0.73	+1.2
4,729,580	-		DDA3937_RS20815	0.73	+2.2
4,729,580	-		DDA3937_RS20815	0.73	+2.1
4,729,580	-		DDA3937_RS20815	0.73	+1.5
4,729,580	-		DDA3937_RS20815	0.73	+1.5
4,729,580	-		DDA3937_RS20815	0.73	+3.2
4,729,580	-		DDA3937_RS20815	0.73	+0.7
4,729,580	-		DDA3937_RS20815	0.73	+2.0
4,729,580	-		DDA3937_RS20815	0.73	+1.0
4,729,580	-		DDA3937_RS20815	0.73	+0.9
4,729,580	-		DDA3937_RS20815	0.73	+1.0
4,729,580	-		DDA3937_RS20815	0.73	+1.8
4,729,580	-		DDA3937_RS20815	0.73	+1.4
4,729,665	-		DDA3937_RS20815	0.80	-0.6
4,729,665	-		DDA3937_RS20815	0.80	+0.5
4,729,665	-		DDA3937_RS20815	0.80	+1.5
4,729,763	+		DDA3937_RS20815	0.87	+1.4
4,729,763	+		DDA3937_RS20815	0.87	+0.6
4,729,763	+		DDA3937_RS20815	0.87	+0.6
4,729,764	-		DDA3937_RS20815	0.87	+2.1
4,729,764	-		DDA3937_RS20815	0.87	+1.4
4,729,764	-		DDA3937_RS20815	0.87	+1.6
4,729,764	-		DDA3937_RS20815	0.87	+0.9
4,729,764	-		DDA3937_RS20815	0.87	+1.7
4,729,775	-		DDA3937_RS20815	0.88	+2.5
4,729,819	+				+1.4
4,729,820	-				+1.1
4,729,846	-				+0.7
4,729,846	-				+1.7
4,729,846	-				+1.3
4,729,846	-				+0.8
4,729,846	-				+0.1
4,729,855	+				+2.3
4,729,856	-				+0.9
4,729,928	+				+1.5
4,729,929	-				+1.4
4,729,929	-				+1.2
4,729,938	+				+1.6
4,730,032	-				+1.2
4,730,229	-		DDA3937_RS20820	0.22	+3.6
4,730,229	-		DDA3937_RS20820	0.22	+1.3
4,730,259	+		DDA3937_RS20820	0.24	+0.3
4,730,259	+		DDA3937_RS20820	0.24	+1.9
4,730,277	+		DDA3937_RS20820	0.25	-0.5
4,730,278	-		DDA3937_RS20820	0.25	+0.4
4,730,282	+		DDA3937_RS20820	0.25	+1.5
4,730,283	-		DDA3937_RS20820	0.25	-0.5
4,730,362	+		DDA3937_RS20820	0.31	+1.1
4,730,373	+		DDA3937_RS20820	0.32	+1.8
4,730,374	-		DDA3937_RS20820	0.32	+0.6
4,730,387	+		DDA3937_RS20820	0.33	+2.2
4,730,387	+		DDA3937_RS20820	0.33	+0.7
4,730,451	+		DDA3937_RS20820	0.37	+2.5
4,730,452	-		DDA3937_RS20820	0.37	+0.5
4,730,455	-		DDA3937_RS20820	0.38	+1.6
4,730,517	+		DDA3937_RS20820	0.42	+0.7
4,730,517	+		DDA3937_RS20820	0.42	-0.1
4,730,517	+		DDA3937_RS20820	0.42	+0.6
4,731,086	+		DDA3937_RS20820	0.83	+1.1
4,731,086	+		DDA3937_RS20820	0.83	+0.6
4,731,095	+		DDA3937_RS20820	0.83	+2.7
4,731,103	+		DDA3937_RS20820	0.84	+0.5
4,731,103	+		DDA3937_RS20820	0.84	+0.9
4,731,103	+		DDA3937_RS20820	0.84	+2.5
4,731,104	-		DDA3937_RS20820	0.84	+0.0
4,731,155	+		DDA3937_RS20820	0.88	+1.0
4,731,155	+		DDA3937_RS20820	0.88	+1.6
4,731,156	-		DDA3937_RS20820	0.88	+1.2
4,731,156	-		DDA3937_RS20820	0.88	+0.8
4,731,163	-		DDA3937_RS20820	0.88	+1.2
4,731,259	+				+0.8
4,731,259	+				+0.3
4,731,260	-				+0.7
4,731,260	-				+0.4
4,731,260	-				-0.5
4,731,282	+				+3.2
4,731,282	+				+0.0
4,731,282	+				+1.3
4,731,282	+				+2.3
4,731,282	+				+0.7
4,731,283	-				+1.2
4,731,309	+				+1.0
4,731,310	-				-1.1
4,731,310	-				+1.0
4,731,318	+				+1.9
4,731,328	-				+1.6
4,731,328	-				+0.3
4,731,338	-				-1.9
4,731,338	-				-0.2
4,731,352	+				+1.0
4,731,353	-				-0.3
4,731,411	+				+0.9
4,731,411	+				-0.9
4,731,412	-				+1.4
4,731,412	-				+0.0
4,731,418	+				-0.2
4,731,418	+				-1.8
4,731,432	+				-2.1
4,731,432	+				-0.3
4,731,433	-				-0.9
4,731,436	+				+0.6
4,731,436	+				-2.1
4,731,436	+				-0.7
4,731,436	+				-0.2
4,731,436	+				-0.7
4,731,436	+				+1.3
4,731,437	-				+0.0
4,731,437	-				+0.2
4,731,437	-				+0.4
4,731,437	-				+0.4
4,731,437	-				-2.5
4,731,437	-				+0.4
4,731,437	-				-1.5
4,731,437	-				-0.7
4,731,437	-				-0.5
4,731,439	+				-0.7
4,731,477	-				+0.2
4,731,517	-				-0.1
4,731,539	+				-0.7
4,731,544	+				+0.2
4,731,544	+				-1.4
4,731,544	+				-2.1
4,731,618	+				+1.1
4,731,619	-				+1.5
4,731,628	+				+0.5
4,731,628	+				+2.2
4,731,629	-				-0.4
4,731,682	+				-0.4
4,731,682	+				+1.0
4,731,683	-				+0.6
4,731,725	-				+0.5
4,731,736	-				+0.5
4,731,765	+				+0.1
4,731,765	+				+1.1
4,731,765	+				+1.3
4,731,765	+				+0.1
4,731,766	-				+1.3
4,731,766	-				-0.7
4,731,766	-				+2.4
4,731,766	-				+1.7
4,731,766	-				+1.5
4,731,766	-				+0.2
4,731,766	-				-1.2
4,731,766	-				-0.1
4,731,766	-				+2.0
4,731,807	+		DDA3937_RS20825	0.11	+1.5
4,731,808	-		DDA3937_RS20825	0.11	+0.8
4,731,808	-		DDA3937_RS20825	0.11	+2.3
4,731,811	+		DDA3937_RS20825	0.11	-0.2
4,731,811	+		DDA3937_RS20825	0.11	+0.4
4,731,811	+		DDA3937_RS20825	0.11	+0.2
4,731,812	-		DDA3937_RS20825	0.11	+2.1
4,731,812	-		DDA3937_RS20825	0.11	+0.8
4,731,855	-				+1.5
4,731,855	-		DDA3937_RS20825	0.13	+0.2
4,731,858	+		DDA3937_RS20825	0.13	+2.0
4,731,858	+		DDA3937_RS20825	0.13	+2.3
4,731,859	-		DDA3937_RS20825	0.13	-0.4
4,731,859	-		DDA3937_RS20825	0.13	+1.7
4,731,859	-		DDA3937_RS20825	0.13	+1.5
4,731,882	+		DDA3937_RS20825	0.14	+1.0
4,731,882	+		DDA3937_RS20825	0.14	-1.3
4,731,882	+		DDA3937_RS20825	0.14	+0.7
4,731,882	+		DDA3937_RS20825	0.14	+2.0
4,731,882	+		DDA3937_RS20825	0.14	-1.1
4,731,883	-		DDA3937_RS20825	0.14	+1.9
4,731,883	-		DDA3937_RS20825	0.14	+0.4
4,731,883	-		DDA3937_RS20825	0.14	+0.4
4,731,883	-		DDA3937_RS20825	0.14	+0.8
4,731,886	-		DDA3937_RS20825	0.15	-0.0
4,731,901	-		DDA3937_RS20825	0.15	+1.0
4,731,955	+		DDA3937_RS20825	0.17	+1.4
4,731,988	-		DDA3937_RS20825	0.19	-0.1
4,731,996	+		DDA3937_RS20825	0.19	-0.9
4,731,996	+		DDA3937_RS20825	0.19	+0.0
4,731,997	-		DDA3937_RS20825	0.19	+0.5
4,731,997	-		DDA3937_RS20825	0.19	+0.3
4,731,997	-		DDA3937_RS20825	0.19	+0.4
4,731,997	-		DDA3937_RS20825	0.19	+1.6
4,731,997	-		DDA3937_RS20825	0.19	+1.5
4,731,997	-		DDA3937_RS20825	0.19	+1.6
4,731,997	-		DDA3937_RS20825	0.19	+1.1
4,731,997	-		DDA3937_RS20825	0.19	+0.6
4,731,997	-		DDA3937_RS20825	0.19	-0.0
4,731,997	-		DDA3937_RS20825	0.19	+1.2
4,731,998	+		DDA3937_RS20825	0.19	-0.3
4,731,998	+		DDA3937_RS20825	0.19	+2.8
4,731,999	-		DDA3937_RS20825	0.19	+0.3
4,732,000	+		DDA3937_RS20825	0.19	-0.0
4,732,000	+		DDA3937_RS20825	0.19	+0.5
4,732,000	+		DDA3937_RS20825	0.19	+1.7
4,732,001	-		DDA3937_RS20825	0.19	+1.6
4,732,001	-		DDA3937_RS20825	0.19	+1.1
4,732,001	-		DDA3937_RS20825	0.19	+1.1
4,732,001	-		DDA3937_RS20825	0.19	+0.7
4,732,001	-		DDA3937_RS20825	0.19	-0.4
4,732,048	-		DDA3937_RS20825	0.21	-0.5
4,732,053	+		DDA3937_RS20825	0.21	+0.8
4,732,053	+		DDA3937_RS20825	0.21	+1.4
4,732,054	-		DDA3937_RS20825	0.21	+0.9
4,732,054	-		DDA3937_RS20825	0.21	+2.9
4,732,057	-		DDA3937_RS20825	0.22	+1.6
4,732,057	-		DDA3937_RS20825	0.22	+0.1
4,732,057	-		DDA3937_RS20825	0.22	+0.2
4,732,057	-		DDA3937_RS20825	0.22	+0.5
4,732,084	+		DDA3937_RS20825	0.23	-0.1
4,732,138	+		DDA3937_RS20825	0.25	+0.2
4,732,138	+		DDA3937_RS20825	0.25	+1.0
4,732,141	+		DDA3937_RS20825	0.25	-0.0
4,732,141	+		DDA3937_RS20825	0.25	+2.2
4,732,142	-		DDA3937_RS20825	0.25	+1.2
4,732,142	-		DDA3937_RS20825	0.25	-0.7
4,732,142	-		DDA3937_RS20825	0.25	+0.5
4,732,142	-		DDA3937_RS20825	0.25	-0.5
4,732,210	-		DDA3937_RS20825	0.28	+1.4
4,732,210	-		DDA3937_RS20825	0.28	+0.9
4,732,210	-		DDA3937_RS20825	0.28	+1.9
4,732,224	+		DDA3937_RS20825	0.28	-1.4
4,732,225	-		DDA3937_RS20825	0.28	+0.4
4,732,263	+		DDA3937_RS20825	0.30	-0.4
4,732,263	+		DDA3937_RS20825	0.30	+1.9
4,732,319	-		DDA3937_RS20825	0.32	+1.4
4,732,319	-		DDA3937_RS20825	0.32	-1.1
4,732,319	-		DDA3937_RS20825	0.32	+0.8