Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20435

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20430 and DDA3937_RS20435 are separated by 15 nucleotidesDDA3937_RS20435 and DDA3937_RS20440 are separated by 291 nucleotides DDA3937_RS20430: DDA3937_RS20430 - L-threonine 3-dehydrogenase, at 4,652,478 to 4,653,503 _RS20430 DDA3937_RS20435: DDA3937_RS20435 - glycine C-acetyltransferase, at 4,653,519 to 4,654,715 _RS20435 DDA3937_RS20440: DDA3937_RS20440 - ADP-glyceromanno-heptose 6-epimerase, at 4,655,007 to 4,655,939 _RS20440 Position (kb) 4653 4654 4655Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4652.557 kb on + strandat 4652.617 kb on + strand, within DDA3937_RS20430at 4652.618 kb on - strand, within DDA3937_RS20430at 4652.644 kb on + strand, within DDA3937_RS20430at 4652.644 kb on + strand, within DDA3937_RS20430at 4652.644 kb on + strand, within DDA3937_RS20430at 4652.644 kb on + strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.645 kb on - strand, within DDA3937_RS20430at 4652.654 kb on + strand, within DDA3937_RS20430at 4652.655 kb on - strand, within DDA3937_RS20430at 4652.714 kb on + strand, within DDA3937_RS20430at 4652.859 kb on + strand, within DDA3937_RS20430at 4652.859 kb on + strand, within DDA3937_RS20430at 4652.859 kb on + strand, within DDA3937_RS20430at 4652.860 kb on - strand, within DDA3937_RS20430at 4652.860 kb on - strand, within DDA3937_RS20430at 4653.068 kb on + strand, within DDA3937_RS20430at 4653.069 kb on - strand, within DDA3937_RS20430at 4653.113 kb on + strand, within DDA3937_RS20430at 4653.113 kb on + strand, within DDA3937_RS20430at 4653.115 kb on + strand, within DDA3937_RS20430at 4653.115 kb on + strand, within DDA3937_RS20430at 4653.115 kb on + strand, within DDA3937_RS20430at 4653.116 kb on - strand, within DDA3937_RS20430at 4653.133 kb on + strand, within DDA3937_RS20430at 4653.134 kb on - strandat 4653.176 kb on + strand, within DDA3937_RS20430at 4653.176 kb on + strand, within DDA3937_RS20430at 4653.177 kb on - strand, within DDA3937_RS20430at 4653.177 kb on - strand, within DDA3937_RS20430at 4653.177 kb on - strand, within DDA3937_RS20430at 4653.212 kb on + strand, within DDA3937_RS20430at 4653.213 kb on - strand, within DDA3937_RS20430at 4653.233 kb on + strand, within DDA3937_RS20430at 4653.233 kb on + strand, within DDA3937_RS20430at 4653.234 kb on - strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.310 kb on + strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.311 kb on - strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.370 kb on + strand, within DDA3937_RS20430at 4653.371 kb on - strand, within DDA3937_RS20430at 4653.371 kb on - strand, within DDA3937_RS20430at 4653.371 kb on - strand, within DDA3937_RS20430at 4653.371 kb on - strandat 4653.374 kb on + strand, within DDA3937_RS20430at 4653.374 kb on + strand, within DDA3937_RS20430at 4653.374 kb on + strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.375 kb on - strand, within DDA3937_RS20430at 4653.396 kb on - strand, within DDA3937_RS20430at 4653.506 kb on + strandat 4653.506 kb on + strandat 4653.507 kb on - strandat 4653.507 kb on - strandat 4653.555 kb on - strandat 4653.591 kb on - strandat 4653.664 kb on + strand, within DDA3937_RS20435at 4653.664 kb on + strand, within DDA3937_RS20435at 4653.664 kb on + strand, within DDA3937_RS20435at 4653.664 kb on + strand, within DDA3937_RS20435at 4653.664 kb on + strandat 4653.664 kb on + strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.665 kb on - strand, within DDA3937_RS20435at 4653.668 kb on + strand, within DDA3937_RS20435at 4653.668 kb on + strand, within DDA3937_RS20435at 4653.668 kb on + strand, within DDA3937_RS20435at 4653.668 kb on + strand, within DDA3937_RS20435at 4653.668 kb on + strand, within DDA3937_RS20435at 4653.668 kb on + strand, within DDA3937_RS20435at 4653.668 kb on + strand, within DDA3937_RS20435at 4653.668 kb on + strand, within DDA3937_RS20435at 4653.669 kb on - strand, within DDA3937_RS20435at 4653.669 kb on - strand, within DDA3937_RS20435at 4653.669 kb on - strand, within DDA3937_RS20435at 4653.669 kb on - strand, within DDA3937_RS20435at 4653.669 kb on - strand, within DDA3937_RS20435at 4653.669 kb on - strand, within DDA3937_RS20435at 4653.669 kb on - strand, within DDA3937_RS20435at 4653.669 kb on - strand, within DDA3937_RS20435at 4653.761 kb on + strand, within DDA3937_RS20435at 4653.761 kb on + strand, within DDA3937_RS20435at 4653.840 kb on + strand, within DDA3937_RS20435at 4653.840 kb on + strand, within DDA3937_RS20435at 4653.904 kb on + strand, within DDA3937_RS20435at 4653.905 kb on - strand, within DDA3937_RS20435at 4653.905 kb on - strand, within DDA3937_RS20435at 4653.905 kb on - strand, within DDA3937_RS20435at 4653.905 kb on - strand, within DDA3937_RS20435at 4653.956 kb on + strand, within DDA3937_RS20435at 4653.958 kb on + strand, within DDA3937_RS20435at 4653.958 kb on + strand, within DDA3937_RS20435at 4654.004 kb on + strand, within DDA3937_RS20435at 4654.005 kb on - strand, within DDA3937_RS20435at 4654.033 kb on + strand, within DDA3937_RS20435at 4654.033 kb on + strand, within DDA3937_RS20435at 4654.033 kb on + strand, within DDA3937_RS20435at 4654.033 kb on + strand, within DDA3937_RS20435at 4654.034 kb on - strand, within DDA3937_RS20435at 4654.108 kb on + strand, within DDA3937_RS20435at 4654.130 kb on + strand, within DDA3937_RS20435at 4654.130 kb on + strand, within DDA3937_RS20435at 4654.194 kb on - strand, within DDA3937_RS20435at 4654.244 kb on + strand, within DDA3937_RS20435at 4654.244 kb on + strand, within DDA3937_RS20435at 4654.245 kb on - strand, within DDA3937_RS20435at 4654.245 kb on - strand, within DDA3937_RS20435at 4654.251 kb on - strand, within DDA3937_RS20435at 4654.265 kb on - strand, within DDA3937_RS20435at 4654.393 kb on + strand, within DDA3937_RS20435at 4654.454 kb on + strand, within DDA3937_RS20435at 4654.464 kb on - strand, within DDA3937_RS20435at 4654.464 kb on - strand, within DDA3937_RS20435at 4654.505 kb on + strand, within DDA3937_RS20435at 4654.561 kb on + strand, within DDA3937_RS20435at 4654.561 kb on + strand, within DDA3937_RS20435at 4654.561 kb on + strand, within DDA3937_RS20435at 4654.561 kb on + strand, within DDA3937_RS20435at 4654.562 kb on - strand, within DDA3937_RS20435at 4654.562 kb on - strand, within DDA3937_RS20435at 4654.562 kb on - strand, within DDA3937_RS20435at 4654.562 kb on - strand, within DDA3937_RS20435at 4654.562 kb on - strand, within DDA3937_RS20435at 4654.608 kb on - strandat 4654.608 kb on - strandat 4654.649 kb on + strandat 4654.650 kb on - strandat 4654.699 kb on + strandat 4654.700 kb on - strandat 4654.753 kb on + strandat 4654.754 kb on - strandat 4654.782 kb on + strandat 4654.808 kb on + strandat 4654.808 kb on + strandat 4654.808 kb on + strandat 4654.809 kb on - strandat 4654.809 kb on - strandat 4654.809 kb on - strandat 4654.809 kb on - strandat 4654.809 kb on - strandat 4654.815 kb on - strandat 4654.947 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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4,652,557 + +1.7
4,652,617 + DDA3937_RS20430 0.14 -0.9
4,652,618 - DDA3937_RS20430 0.14 -0.7
4,652,644 + DDA3937_RS20430 0.16 -0.8
4,652,644 + DDA3937_RS20430 0.16 +0.7
4,652,644 + DDA3937_RS20430 0.16 -0.8
4,652,644 + DDA3937_RS20430 0.16 +0.2
4,652,645 - DDA3937_RS20430 0.16 -1.2
4,652,645 - DDA3937_RS20430 0.16 -2.5
4,652,645 - DDA3937_RS20430 0.16 +0.9
4,652,645 - DDA3937_RS20430 0.16 +1.9
4,652,645 - DDA3937_RS20430 0.16 +2.0
4,652,645 - DDA3937_RS20430 0.16 +1.1
4,652,645 - DDA3937_RS20430 0.16 -2.0
4,652,645 - DDA3937_RS20430 0.16 -2.4
4,652,654 + DDA3937_RS20430 0.17 -1.6
4,652,655 - DDA3937_RS20430 0.17 +0.2
4,652,714 + DDA3937_RS20430 0.23 +0.2
4,652,859 + DDA3937_RS20430 0.37 +1.2
4,652,859 + DDA3937_RS20430 0.37 -0.9
4,652,859 + DDA3937_RS20430 0.37 -1.7
4,652,860 - DDA3937_RS20430 0.37 +0.9
4,652,860 - DDA3937_RS20430 0.37 -0.7
4,653,068 + DDA3937_RS20430 0.58 +0.5
4,653,069 - DDA3937_RS20430 0.58 -1.3
4,653,113 + DDA3937_RS20430 0.62 +0.3
4,653,113 + DDA3937_RS20430 0.62 -0.0
4,653,115 + DDA3937_RS20430 0.62 -0.3
4,653,115 + DDA3937_RS20430 0.62 -0.1
4,653,115 + DDA3937_RS20430 0.62 -1.2
4,653,116 - DDA3937_RS20430 0.62 -0.4
4,653,133 + DDA3937_RS20430 0.64 -1.1
4,653,134 - -0.5
4,653,176 + DDA3937_RS20430 0.68 -0.5
4,653,176 + DDA3937_RS20430 0.68 -1.1
4,653,177 - DDA3937_RS20430 0.68 -0.1
4,653,177 - DDA3937_RS20430 0.68 -1.7
4,653,177 - DDA3937_RS20430 0.68 -0.0
4,653,212 + DDA3937_RS20430 0.72 +0.5
4,653,213 - DDA3937_RS20430 0.72 +0.5
4,653,233 + DDA3937_RS20430 0.74 +0.7
4,653,233 + DDA3937_RS20430 0.74 +0.1
4,653,234 - DDA3937_RS20430 0.74 -0.2
4,653,310 + DDA3937_RS20430 0.81 -0.7
4,653,310 + DDA3937_RS20430 0.81 -0.7
4,653,310 + DDA3937_RS20430 0.81 -0.4
4,653,310 + DDA3937_RS20430 0.81 -0.5
4,653,310 + DDA3937_RS20430 0.81 +1.4
4,653,310 + DDA3937_RS20430 0.81 -1.2
4,653,310 + DDA3937_RS20430 0.81 -1.9
4,653,310 + DDA3937_RS20430 0.81 -0.5
4,653,311 - DDA3937_RS20430 0.81 -1.9
4,653,311 - DDA3937_RS20430 0.81 +1.5
4,653,311 - DDA3937_RS20430 0.81 +0.6
4,653,311 - DDA3937_RS20430 0.81 +0.4
4,653,311 - DDA3937_RS20430 0.81 -0.3
4,653,311 - DDA3937_RS20430 0.81 +3.9
4,653,311 - DDA3937_RS20430 0.81 +1.3
4,653,311 - DDA3937_RS20430 0.81 -0.1
4,653,370 + DDA3937_RS20430 0.87 -0.1
4,653,370 + DDA3937_RS20430 0.87 -1.7
4,653,370 + DDA3937_RS20430 0.87 +0.8
4,653,370 + DDA3937_RS20430 0.87 -0.2
4,653,370 + DDA3937_RS20430 0.87 -1.4
4,653,371 - DDA3937_RS20430 0.87 -1.7
4,653,371 - DDA3937_RS20430 0.87 -1.0
4,653,371 - DDA3937_RS20430 0.87 -0.9
4,653,371 - +0.1
4,653,374 + DDA3937_RS20430 0.87 -1.6
4,653,374 + DDA3937_RS20430 0.87 +0.3
4,653,374 + DDA3937_RS20430 0.87 +0.2
4,653,375 - DDA3937_RS20430 0.87 +0.1
4,653,375 - DDA3937_RS20430 0.87 -0.3
4,653,375 - DDA3937_RS20430 0.87 +1.7
4,653,375 - DDA3937_RS20430 0.87 -0.7
4,653,375 - DDA3937_RS20430 0.87 +0.4
4,653,396 - DDA3937_RS20430 0.89 -0.0
4,653,506 + -0.4
4,653,506 + +0.5
4,653,507 - -0.1
4,653,507 - +0.8
4,653,555 - -0.0
4,653,591 - +0.5
4,653,664 + DDA3937_RS20435 0.12 -1.7
4,653,664 + DDA3937_RS20435 0.12 -0.7
4,653,664 + DDA3937_RS20435 0.12 -0.5
4,653,664 + DDA3937_RS20435 0.12 -0.5
4,653,664 + +1.0
4,653,664 + DDA3937_RS20435 0.12 -0.8
4,653,665 - DDA3937_RS20435 0.12 -0.5
4,653,665 - DDA3937_RS20435 0.12 -2.5
4,653,665 - DDA3937_RS20435 0.12 -1.9
4,653,665 - DDA3937_RS20435 0.12 -0.9
4,653,665 - DDA3937_RS20435 0.12 -1.0
4,653,665 - DDA3937_RS20435 0.12 +0.9
4,653,665 - DDA3937_RS20435 0.12 -0.8
4,653,665 - DDA3937_RS20435 0.12 -0.3
4,653,665 - DDA3937_RS20435 0.12 +0.8
4,653,665 - DDA3937_RS20435 0.12 +0.5
4,653,665 - DDA3937_RS20435 0.12 +0.1
4,653,665 - DDA3937_RS20435 0.12 +0.9
4,653,668 + DDA3937_RS20435 0.12 -0.3
4,653,668 + DDA3937_RS20435 0.12 -0.1
4,653,668 + DDA3937_RS20435 0.12 +0.0
4,653,668 + DDA3937_RS20435 0.12 -1.3
4,653,668 + DDA3937_RS20435 0.12 -1.4
4,653,668 + DDA3937_RS20435 0.12 +1.7
4,653,668 + DDA3937_RS20435 0.12 +1.5
4,653,668 + DDA3937_RS20435 0.12 +1.3
4,653,669 - DDA3937_RS20435 0.13 -1.1
4,653,669 - DDA3937_RS20435 0.13 -0.8
4,653,669 - DDA3937_RS20435 0.13 -2.7
4,653,669 - DDA3937_RS20435 0.13 -0.3
4,653,669 - DDA3937_RS20435 0.13 -0.8
4,653,669 - DDA3937_RS20435 0.13 -0.5
4,653,669 - DDA3937_RS20435 0.13 -0.1
4,653,669 - DDA3937_RS20435 0.13 +0.1
4,653,761 + DDA3937_RS20435 0.20 -1.4
4,653,761 + DDA3937_RS20435 0.20 -1.9
4,653,840 + DDA3937_RS20435 0.27 -1.1
4,653,840 + DDA3937_RS20435 0.27 -0.5
4,653,904 + DDA3937_RS20435 0.32 -1.2
4,653,905 - DDA3937_RS20435 0.32 -0.0
4,653,905 - DDA3937_RS20435 0.32 -0.8
4,653,905 - DDA3937_RS20435 0.32 -0.7
4,653,905 - DDA3937_RS20435 0.32 -0.4
4,653,956 + DDA3937_RS20435 0.37 -0.4
4,653,958 + DDA3937_RS20435 0.37 -0.6
4,653,958 + DDA3937_RS20435 0.37 -0.6
4,654,004 + DDA3937_RS20435 0.41 +0.1
4,654,005 - DDA3937_RS20435 0.41 +1.5
4,654,033 + DDA3937_RS20435 0.43 -1.0
4,654,033 + DDA3937_RS20435 0.43 -0.5
4,654,033 + DDA3937_RS20435 0.43 -3.4
4,654,033 + DDA3937_RS20435 0.43 -2.6
4,654,034 - DDA3937_RS20435 0.43 -0.7
4,654,108 + DDA3937_RS20435 0.49 -0.0
4,654,130 + DDA3937_RS20435 0.51 -1.8
4,654,130 + DDA3937_RS20435 0.51 +1.0
4,654,194 - DDA3937_RS20435 0.56 -0.6
4,654,244 + DDA3937_RS20435 0.61 -2.5
4,654,244 + DDA3937_RS20435 0.61 -0.7
4,654,245 - DDA3937_RS20435 0.61 +0.2
4,654,245 - DDA3937_RS20435 0.61 -1.1
4,654,251 - DDA3937_RS20435 0.61 +0.3
4,654,265 - DDA3937_RS20435 0.62 -0.4
4,654,393 + DDA3937_RS20435 0.73 -0.6
4,654,454 + DDA3937_RS20435 0.78 -0.9
4,654,464 - DDA3937_RS20435 0.79 -0.1
4,654,464 - DDA3937_RS20435 0.79 +0.3
4,654,505 + DDA3937_RS20435 0.82 -0.4
4,654,561 + DDA3937_RS20435 0.87 -0.3
4,654,561 + DDA3937_RS20435 0.87 +0.0
4,654,561 + DDA3937_RS20435 0.87 +0.2
4,654,561 + DDA3937_RS20435 0.87 -0.6
4,654,562 - DDA3937_RS20435 0.87 -0.1
4,654,562 - DDA3937_RS20435 0.87 -1.8
4,654,562 - DDA3937_RS20435 0.87 -0.5
4,654,562 - DDA3937_RS20435 0.87 -0.1
4,654,562 - DDA3937_RS20435 0.87 -0.7
4,654,608 - -1.8
4,654,608 - +1.5
4,654,649 + +0.1
4,654,650 - +0.5
4,654,699 + +0.5
4,654,700 - +0.2
4,654,753 + -1.1
4,654,754 - -0.1
4,654,782 + -3.3
4,654,808 + -0.7
4,654,808 + -1.5
4,654,808 + -0.0
4,654,809 - -0.9
4,654,809 - +0.6
4,654,809 - -1.5
4,654,809 - +0.2
4,654,809 - -1.5
4,654,815 - +0.2
4,654,947 + +2.1

Or see this region's nucleotide sequence