Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17080

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,889,109	+		DDA3937_RS17070	0.77	-0.9
3,889,109	+		DDA3937_RS17070	0.77	-1.3
3,889,109	+		DDA3937_RS17070	0.77	-0.9
3,889,110	-		DDA3937_RS17070	0.77	-0.6
3,889,110	-		DDA3937_RS17070	0.77	-0.1
3,889,110	-		DDA3937_RS17070	0.77	-2.8
3,889,110	-		DDA3937_RS17070	0.77	+0.1
3,889,113	+		DDA3937_RS17070	0.78	+0.4
3,889,114	-		DDA3937_RS17070	0.78	-2.4
3,889,114	-		DDA3937_RS17070	0.78	-1.8
3,889,224	+		DDA3937_RS17070	0.85	+0.0
3,889,225	-		DDA3937_RS17070	0.85	-0.3
3,889,225	-		DDA3937_RS17070	0.85	-1.1
3,889,320	+				+0.4
3,889,437	+				-0.1
3,889,437	+				-2.5
3,889,453	+				-0.1
3,889,482	-				+0.2
3,889,504	+				-0.1
3,889,508	+				-0.9
3,889,508	+				-0.7
3,889,509	-				+0.0
3,889,529	+				+1.0
3,889,529	+				+0.2
3,889,530	-				+0.3
3,889,530	-				+0.3
3,889,530	-				+0.5
3,889,540	-				+0.7
3,889,540	-				-1.0
3,889,569	+				-0.8
3,889,569	+				+2.3
3,889,570	-				+0.3
3,889,570	-				-0.3
3,889,600	+				-0.3
3,889,600	+				-0.3
3,889,600	+				-1.1
3,889,601	-				-1.5
3,889,601	-				-0.2
3,889,601	-				-1.5
3,889,601	-				-0.4
3,889,601	-				-0.6
3,889,601	-				-2.1
3,889,601	-				-0.4
3,889,614	+				+0.3
3,889,614	+				+1.3
3,889,614	+				-1.5
3,889,614	+				-1.5
3,889,614	+				-0.4
3,889,614	+				-0.2
3,889,614	+				-2.2
3,889,614	+				+1.1
3,889,614	+				-0.2
3,889,614	+				+0.1
3,889,614	+				-0.4
3,889,614	+				-0.4
3,889,615	-				-0.1
3,889,615	-				+0.3
3,889,615	-				-0.9
3,889,615	-				+1.1
3,889,615	-				+1.1
3,889,615	-				+1.5
3,889,615	-				-0.8
3,889,615	-				-0.1
3,889,629	+				-0.6
3,889,780	-		DDA3937_RS17075	0.50	-1.3
3,889,939	+				+1.8
3,889,939	+				-1.7
3,889,939	+				+1.5
3,889,939	+				-0.4
3,889,939	+				-1.3
3,889,939	+				+0.7
3,889,939	+				-0.5
3,889,939	+				+0.9
3,889,939	+				+4.1
3,889,940	-				+1.3
3,889,940	-				+0.5
3,889,940	-				-0.3
3,889,970	+				-0.8
3,889,971	-				+1.4
3,890,032	+				-1.0
3,890,033	-				-0.3
3,890,046	-				-0.3
3,890,092	+				-1.3
3,890,092	+				-1.7
3,890,092	+				-0.4
3,890,092	+				-0.5
3,890,092	+				-0.8
3,890,092	+				-0.1
3,890,093	-				-0.3
3,890,093	-				+0.7
3,890,093	-				+0.8
3,890,093	-				-0.7
3,890,096	+				-0.8
3,890,096	+				-0.9
3,890,096	+				-0.4
3,890,096	+				-0.3
3,890,096	+				+0.0
3,890,096	+				+4.1
3,890,097	-				-0.3
3,890,097	-				-0.2
3,890,097	-				+1.3
3,890,097	-				+0.6
3,890,097	-				-1.9
3,890,101	+				+0.7
3,890,101	+				-0.9
3,890,102	-				-0.3
3,890,219	+		DDA3937_RS17080	0.35	-1.9
3,890,247	-		DDA3937_RS17080	0.43	-1.3
3,890,247	-		DDA3937_RS17080	0.43	-0.2
3,890,247	-		DDA3937_RS17080	0.43	-0.9
3,890,314	+		DDA3937_RS17080	0.62	-2.8
3,890,314	+		DDA3937_RS17080	0.62	+0.3
3,890,314	+		DDA3937_RS17080	0.62	-3.0
3,890,314	+		DDA3937_RS17080	0.62	+0.3
3,890,314	+		DDA3937_RS17080	0.62	-2.1
3,890,315	-		DDA3937_RS17080	0.62	-0.1
3,890,315	-		DDA3937_RS17080	0.62	-1.4
3,890,315	-		DDA3937_RS17080	0.62	-0.0
3,890,435	+				+2.3
3,890,439	+				-2.2
3,890,439	+				-0.6
3,890,439	+				-2.3
3,890,439	+				-1.6
3,890,439	+				-1.5
3,890,439	+				+0.5
3,890,440	-				-1.9
3,890,440	-				-0.1
3,890,440	-				-0.2
3,890,441	+				-1.5
3,890,442	-				-0.7
3,890,456	+				-1.8
3,890,456	+				+0.7
3,890,456	+				-2.2
3,890,457	-				+0.1
3,890,457	-				+1.2
3,890,457	-				+0.5
3,890,470	+				-0.2
3,890,470	+				+0.5
3,890,470	+				+1.7
3,890,470	+				-0.9
3,890,476	+				-0.7
3,890,476	+				+0.8
3,890,477	-				-0.3
3,890,477	-				-0.1
3,890,477	-				+0.3
3,890,540	+				-0.0
3,890,541	-				-1.1
3,890,553	+				-0.6
3,890,570	+				-0.2
3,890,571	-				-0.7
3,890,659	+		DDA3937_RS17085	0.24	-0.7
3,890,660	-		DDA3937_RS17085	0.24	-1.1
3,890,660	-		DDA3937_RS17085	0.24	-0.5
3,890,663	+		DDA3937_RS17085	0.25	-0.7
3,890,663	+		DDA3937_RS17085	0.25	-1.3
3,890,696	+		DDA3937_RS17085	0.34	+0.5
3,890,741	+		DDA3937_RS17085	0.46	+1.0
3,890,742	-		DDA3937_RS17085	0.46	-0.1
3,890,742	-		DDA3937_RS17085	0.46	-2.1
3,890,898	-		DDA3937_RS17085	0.89	+0.2
3,890,927	+				-0.7
3,890,927	+				-0.5
3,890,928	-				+0.7
3,890,928	-				+0.0
3,890,931	+				-1.0
3,890,932	-				-0.3
3,890,932	-				-3.2
3,890,932	-				-1.1
3,890,932	-				+0.2
3,890,932	-				+0.6
3,890,932	-				+0.5
3,890,937	+				+0.7
3,890,937	+				-0.7
3,891,013	-				-1.0
3,891,042	+				-0.3
3,891,043	-				+0.3
3,891,045	+				+0.2
3,891,097	+				-0.4
3,891,100	+				-0.5
3,891,100	+				-1.2
3,891,100	+				-0.4
3,891,100	+				-1.2
3,891,100	+				-0.7
3,891,101	-				-0.9
3,891,106	-				+0.6
3,891,106	-				+0.4
3,891,113	+				-0.7
3,891,114	-				-1.8
3,891,121	+				+0.8
3,891,121	+				+0.1
3,891,121	+				-0.1
3,891,122	-				-1.3
3,891,122	-				-1.0
3,891,130	+				-1.5
3,891,130	+				-1.9
3,891,130	+				+0.3
3,891,131	-				-0.3
3,891,131	-				+1.5
3,891,131	-				-0.8
3,891,131	-				-0.1
3,891,131	-				-1.5
3,891,138	+				-0.1
3,891,139	-				-0.2
3,891,139	-				-1.1
3,891,139	-				-1.6
3,891,139	-				+2.7
3,891,139	-				+0.7
3,891,148	-				-1.0
3,891,155	+				+0.1
3,891,155	+				+0.8
3,891,155	+				+0.0
3,891,155	+				+0.4
3,891,155	+				+1.6
3,891,155	+				-1.3
3,891,155	+				-0.3
3,891,155	+				-1.1
3,891,155	+				-0.8
3,891,155	+				-0.2
3,891,155	+				-0.7
3,891,155	+				-0.8
3,891,155	+				-2.5
3,891,156	-				+1.3
3,891,156	-				+0.3
3,891,156	-				+0.4
3,891,173	-				+1.3
3,891,173	-				-0.6
3,891,173	-				-1.1
3,891,173	-				-0.3
3,891,190	-				-1.4
3,891,190	-				-0.3
3,891,190	-				-0.7
3,891,207	-				-2.4
3,891,207	-				+0.3
3,891,207	-				+0.0
3,891,207	-				-1.1
3,891,207	-				-0.9
3,891,207	-				+1.3
3,891,207	-				+0.6
3,891,207	-				+0.1
3,891,223	+				+0.6
3,891,223	+				+1.3
3,891,223	+				+0.1
3,891,223	+				-0.3
3,891,223	+				+0.3
3,891,240	+				-1.3
3,891,258	+				+2.9
3,891,259	-				-0.7
3,891,342	+		DDA3937_RS17090	0.29	-2.4
3,891,343	-		DDA3937_RS17090	0.30	+1.8
3,891,407	+				-0.7
3,891,407	+		DDA3937_RS17090	0.59	-0.1
3,891,408	-		DDA3937_RS17090	0.59	-0.7
3,891,408	-		DDA3937_RS17090	0.59	+0.3
3,891,443	+		DDA3937_RS17090	0.75	-2.7
3,891,443	+		DDA3937_RS17090	0.75	-1.2
3,891,444	-		DDA3937_RS17090	0.75	-2.4