Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS16995 and DDA3937_RS17000 are separated by 320 nucleotides DDA3937_RS17000 and DDA3937_RS17005 are separated by 97 nucleotides
DDA3937_RS16995: DDA3937_RS16995 - TonB-dependent siderophore receptor, at 3,864,253 to 3,866,433
_RS16995
DDA3937_RS17000: DDA3937_RS17000 - phosphopyruvate hydratase, at 3,866,754 to 3,868,052
_RS17000
DDA3937_RS17005: DDA3937_RS17005 - CTP synthase (glutamine hydrolyzing), at 3,868,150 to 3,869,787
_RS17005
Position (kb)
3866
3867
3868
3869 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3865.854 kb on - strand, within DDA3937_RS16995 at 3865.908 kb on + strand, within DDA3937_RS16995 at 3865.909 kb on - strand, within DDA3937_RS16995 at 3865.937 kb on + strand, within DDA3937_RS16995 at 3866.013 kb on + strand, within DDA3937_RS16995 at 3866.014 kb on - strand, within DDA3937_RS16995 at 3866.059 kb on - strand, within DDA3937_RS16995 at 3866.123 kb on + strand, within DDA3937_RS16995 at 3866.123 kb on + strand, within DDA3937_RS16995 at 3866.124 kb on - strand, within DDA3937_RS16995 at 3866.124 kb on - strand, within DDA3937_RS16995 at 3866.195 kb on + strand, within DDA3937_RS16995 at 3866.224 kb on + strand at 3866.306 kb on - strand at 3866.306 kb on - strand at 3866.325 kb on + strand at 3866.325 kb on + strand at 3866.326 kb on - strand at 3866.326 kb on - strand at 3866.364 kb on + strand at 3866.364 kb on + strand at 3866.365 kb on - strand at 3866.365 kb on - strand at 3866.439 kb on + strand at 3866.453 kb on - strand at 3866.453 kb on - strand at 3866.453 kb on - strand at 3866.481 kb on + strand at 3866.496 kb on + strand at 3866.499 kb on - strand at 3866.499 kb on - strand at 3866.558 kb on + strand at 3866.558 kb on + strand at 3866.558 kb on + strand at 3866.559 kb on - strand at 3866.581 kb on - strand at 3866.609 kb on + strand at 3866.610 kb on - strand at 3866.682 kb on + strand at 3866.683 kb on - strand at 3866.717 kb on + strand at 3866.755 kb on + strand at 3867.281 kb on - strand, within DDA3937_RS17000 at 3867.623 kb on - strand, within DDA3937_RS17000 at 3868.068 kb on - strand at 3868.068 kb on - strand at 3868.068 kb on - strand at 3868.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 3,865,854 - DDA3937_RS16995 0.73 +0.1 3,865,908 + DDA3937_RS16995 0.76 -0.6 3,865,909 - DDA3937_RS16995 0.76 +0.5 3,865,937 + DDA3937_RS16995 0.77 -1.2 3,866,013 + DDA3937_RS16995 0.81 +1.3 3,866,014 - DDA3937_RS16995 0.81 -0.3 3,866,059 - DDA3937_RS16995 0.83 +0.8 3,866,123 + DDA3937_RS16995 0.86 -0.7 3,866,123 + DDA3937_RS16995 0.86 -1.2 3,866,124 - DDA3937_RS16995 0.86 +1.3 3,866,124 - DDA3937_RS16995 0.86 -0.7 3,866,195 + DDA3937_RS16995 0.89 +0.1 3,866,224 + -1.1 3,866,306 - +0.4 3,866,306 - +0.8 3,866,325 + -0.4 3,866,325 + +0.5 3,866,326 - -0.9 3,866,326 - +1.3 3,866,364 + +1.0 3,866,364 + -0.2 3,866,365 - -0.5 3,866,365 - +0.5 3,866,439 + -1.9 3,866,453 - -0.3 3,866,453 - -0.9 3,866,453 - -1.2 3,866,481 + -0.5 3,866,496 + +0.7 3,866,499 - +1.3 3,866,499 - -1.2 3,866,558 + -0.6 3,866,558 + -2.3 3,866,558 + +0.5 3,866,559 - -0.4 3,866,581 - +0.3 3,866,609 + -1.3 3,866,610 - +0.2 3,866,682 + -0.9 3,866,683 - -0.3 3,866,717 + +0.9 3,866,755 + -0.6 3,867,281 - DDA3937_RS17000 0.41 +0.1 3,867,623 - DDA3937_RS17000 0.67 -0.9 3,868,068 - -3.2 3,868,068 - +1.3 3,868,068 - +1.1 3,868,075 - -0.2
Or see this region's nucleotide sequence