Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17000

Experiment: Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS16995 and DDA3937_RS17000 are separated by 320 nucleotidesDDA3937_RS17000 and DDA3937_RS17005 are separated by 97 nucleotides DDA3937_RS16995: DDA3937_RS16995 - TonB-dependent siderophore receptor, at 3,864,253 to 3,866,433 _RS16995 DDA3937_RS17000: DDA3937_RS17000 - phosphopyruvate hydratase, at 3,866,754 to 3,868,052 _RS17000 DDA3937_RS17005: DDA3937_RS17005 - CTP synthase (glutamine hydrolyzing), at 3,868,150 to 3,869,787 _RS17005 Position (kb) 3866 3867 3868 3869Strain fitness (log2 ratio) -3 -2 -1 0 1at 3865.854 kb on - strand, within DDA3937_RS16995at 3865.908 kb on + strand, within DDA3937_RS16995at 3865.909 kb on - strand, within DDA3937_RS16995at 3865.937 kb on + strand, within DDA3937_RS16995at 3866.013 kb on + strand, within DDA3937_RS16995at 3866.014 kb on - strand, within DDA3937_RS16995at 3866.059 kb on - strand, within DDA3937_RS16995at 3866.123 kb on + strand, within DDA3937_RS16995at 3866.123 kb on + strand, within DDA3937_RS16995at 3866.124 kb on - strand, within DDA3937_RS16995at 3866.124 kb on - strand, within DDA3937_RS16995at 3866.195 kb on + strand, within DDA3937_RS16995at 3866.224 kb on + strandat 3866.306 kb on - strandat 3866.306 kb on - strandat 3866.325 kb on + strandat 3866.325 kb on + strandat 3866.326 kb on - strandat 3866.326 kb on - strandat 3866.364 kb on + strandat 3866.364 kb on + strandat 3866.365 kb on - strandat 3866.365 kb on - strandat 3866.439 kb on + strandat 3866.453 kb on - strandat 3866.453 kb on - strandat 3866.453 kb on - strandat 3866.481 kb on + strandat 3866.496 kb on + strandat 3866.499 kb on - strandat 3866.499 kb on - strandat 3866.558 kb on + strandat 3866.558 kb on + strandat 3866.558 kb on + strandat 3866.559 kb on - strandat 3866.581 kb on - strandat 3866.609 kb on + strandat 3866.610 kb on - strandat 3866.682 kb on + strandat 3866.683 kb on - strandat 3866.717 kb on + strandat 3866.755 kb on + strandat 3867.281 kb on - strand, within DDA3937_RS17000at 3867.623 kb on - strand, within DDA3937_RS17000at 3868.068 kb on - strandat 3868.068 kb on - strandat 3868.068 kb on - strandat 3868.075 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Norland
remove
3,865,854 - DDA3937_RS16995 0.73 +0.1
3,865,908 + DDA3937_RS16995 0.76 -0.6
3,865,909 - DDA3937_RS16995 0.76 +0.5
3,865,937 + DDA3937_RS16995 0.77 -1.2
3,866,013 + DDA3937_RS16995 0.81 +1.3
3,866,014 - DDA3937_RS16995 0.81 -0.3
3,866,059 - DDA3937_RS16995 0.83 +0.8
3,866,123 + DDA3937_RS16995 0.86 -0.7
3,866,123 + DDA3937_RS16995 0.86 -1.2
3,866,124 - DDA3937_RS16995 0.86 +1.3
3,866,124 - DDA3937_RS16995 0.86 -0.7
3,866,195 + DDA3937_RS16995 0.89 +0.1
3,866,224 + -1.1
3,866,306 - +0.4
3,866,306 - +0.8
3,866,325 + -0.4
3,866,325 + +0.5
3,866,326 - -0.9
3,866,326 - +1.3
3,866,364 + +1.0
3,866,364 + -0.2
3,866,365 - -0.5
3,866,365 - +0.5
3,866,439 + -1.9
3,866,453 - -0.3
3,866,453 - -0.9
3,866,453 - -1.2
3,866,481 + -0.5
3,866,496 + +0.7
3,866,499 - +1.3
3,866,499 - -1.2
3,866,558 + -0.6
3,866,558 + -2.3
3,866,558 + +0.5
3,866,559 - -0.4
3,866,581 - +0.3
3,866,609 + -1.3
3,866,610 - +0.2
3,866,682 + -0.9
3,866,683 - -0.3
3,866,717 + +0.9
3,866,755 + -0.6
3,867,281 - DDA3937_RS17000 0.41 +0.1
3,867,623 - DDA3937_RS17000 0.67 -0.9
3,868,068 - -3.2
3,868,068 - +1.3
3,868,068 - +1.1
3,868,075 - -0.2

Or see this region's nucleotide sequence