Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15635

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,580,462	+		DDA3937_RS15630	0.21	+0.4
3,580,673	-		DDA3937_RS15630	0.40	-2.2
3,580,703	+		DDA3937_RS15630	0.43	-0.7
3,580,703	+		DDA3937_RS15630	0.43	+0.6
3,580,703	+		DDA3937_RS15630	0.43	-0.6
3,580,704	-		DDA3937_RS15630	0.43	+1.6
3,580,704	-		DDA3937_RS15630	0.43	-0.7
3,580,730	+		DDA3937_RS15630	0.45	+2.4
3,580,731	-		DDA3937_RS15630	0.45	-0.0
3,580,772	+		DDA3937_RS15630	0.49	+1.0
3,580,772	+		DDA3937_RS15630	0.49	-0.9
3,580,772	+		DDA3937_RS15630	0.49	+1.6
3,580,772	+		DDA3937_RS15630	0.49	+1.8
3,580,772	+		DDA3937_RS15630	0.49	+0.3
3,580,773	-		DDA3937_RS15630	0.49	-1.9
3,580,773	-		DDA3937_RS15630	0.49	-1.2
3,580,773	-		DDA3937_RS15630	0.49	+0.0
3,580,773	-		DDA3937_RS15630	0.49	+1.3
3,580,773	-		DDA3937_RS15630	0.49	+0.7
3,580,831	+		DDA3937_RS15630	0.54	+0.6
3,580,832	-		DDA3937_RS15630	0.54	-0.1
3,580,919	+		DDA3937_RS15630	0.62	+0.4
3,580,955	+		DDA3937_RS15630	0.66	-0.0
3,580,955	+		DDA3937_RS15630	0.66	+0.5
3,580,955	+		DDA3937_RS15630	0.66	+0.9
3,580,956	-		DDA3937_RS15630	0.66	+0.3
3,580,956	-				+1.2
3,580,956	-		DDA3937_RS15630	0.66	+0.4
3,580,956	-		DDA3937_RS15630	0.66	-0.9
3,581,019	-		DDA3937_RS15630	0.71	+0.5
3,581,019	-		DDA3937_RS15630	0.71	+1.0
3,581,019	-		DDA3937_RS15630	0.71	-0.7
3,581,087	-		DDA3937_RS15630	0.78	-0.2
3,581,128	+		DDA3937_RS15630	0.81	-1.4
3,581,128	+		DDA3937_RS15630	0.81	-0.7
3,581,128	+		DDA3937_RS15630	0.81	-0.7
3,581,128	+		DDA3937_RS15630	0.81	-1.2
3,581,128	+		DDA3937_RS15630	0.81	-0.3
3,581,128	+		DDA3937_RS15630	0.81	+2.2
3,581,128	+		DDA3937_RS15630	0.81	+0.8
3,581,128	+		DDA3937_RS15630	0.81	-1.9
3,581,128	+		DDA3937_RS15630	0.81	+3.3
3,581,128	+		DDA3937_RS15630	0.81	+0.1
3,581,128	+		DDA3937_RS15630	0.81	-0.8
3,581,128	+		DDA3937_RS15630	0.81	-0.0
3,581,129	-		DDA3937_RS15630	0.81	-3.4
3,581,129	-		DDA3937_RS15630	0.81	-0.4
3,581,129	-		DDA3937_RS15630	0.81	+0.5
3,581,129	-		DDA3937_RS15630	0.81	-1.2
3,581,129	-		DDA3937_RS15630	0.81	-1.8
3,581,129	-		DDA3937_RS15630	0.81	-0.3
3,581,129	-		DDA3937_RS15630	0.81	-2.4
3,581,129	-		DDA3937_RS15630	0.81	+4.6
3,581,129	-		DDA3937_RS15630	0.81	-0.0
3,581,132	+		DDA3937_RS15630	0.82	-1.8
3,581,132	+		DDA3937_RS15630	0.82	-0.7
3,581,132	+		DDA3937_RS15630	0.82	-2.2
3,581,132	+		DDA3937_RS15630	0.82	+1.5
3,581,132	+		DDA3937_RS15630	0.82	+0.7
3,581,133	-		DDA3937_RS15630	0.82	-0.6
3,581,133	-		DDA3937_RS15630	0.82	-1.0
3,581,133	-		DDA3937_RS15630	0.82	-2.9
3,581,133	-		DDA3937_RS15630	0.82	-2.9
3,581,133	-		DDA3937_RS15630	0.82	-0.1
3,581,133	-		DDA3937_RS15630	0.82	-0.6
3,581,133	-		DDA3937_RS15630	0.82	-1.2
3,581,236	+				-0.8
3,581,237	-				-0.8
3,581,237	-				+0.9
3,581,285	+				+0.3
3,581,302	-				+0.1
3,581,383	-				+0.7
3,581,392	-				+0.3
3,581,392	-				+0.5
3,581,450	+				+0.2
3,581,582	+		DDA3937_RS15635	0.37	+0.2
3,581,583	-		DDA3937_RS15635	0.37	-2.3
3,581,583	-				-0.4
3,581,583	-		DDA3937_RS15635	0.37	-0.4
3,581,583	-		DDA3937_RS15635	0.37	-1.7
3,581,644	+		DDA3937_RS15635	0.55	-1.7
3,581,644	+		DDA3937_RS15635	0.55	+0.2
3,581,645	-		DDA3937_RS15635	0.55	-2.3
3,581,645	-		DDA3937_RS15635	0.55	-1.5
3,581,697	+		DDA3937_RS15635	0.71	-0.7
3,581,748	+		DDA3937_RS15635	0.86	-2.0
3,581,749	-		DDA3937_RS15635	0.86	+1.4
3,581,774	+				-3.3
3,581,775	-				-0.2
3,581,806	+				+0.4
3,581,816	+				+1.3
3,581,816	+				-2.0
3,581,816	+				-1.5
3,581,816	+				+0.8
3,581,817	-				-0.4
3,581,817	-				-0.4
3,581,817	-				-0.2
3,581,817	-				-1.4
3,581,817	-				-0.8
3,581,817	-				-0.4
3,581,817	-				+0.2
3,581,817	-				-1.6
3,581,820	+				+0.5
3,581,820	+				+0.2
3,581,820	+				-0.8
3,581,821	-				+0.4
3,581,821	-				-1.4
3,581,872	-				+1.6
3,581,872	-				+0.3
3,581,876	+				+0.2
3,581,876	+				-2.7
3,581,876	+				-0.7
3,581,877	-				-0.3
3,581,882	+				-0.8
3,581,882	+				-0.8
3,581,883	-				-0.8
3,581,883	-				-1.5
3,581,889	+				-1.3
3,581,931	-				-1.7
3,581,999	-				+0.3
3,581,999	-				-0.8
3,582,011	+				+0.2
3,582,012	-				-1.8
3,582,012	-				-0.7
3,582,012	-				-0.9
3,582,012	-				-0.8
3,582,012	-				-2.4
3,582,060	+		DDA3937_RS15640	0.13	-1.4
3,582,218	-		DDA3937_RS15640	0.25	+0.2
3,582,250	+		DDA3937_RS15640	0.28	+0.8
3,582,277	-		DDA3937_RS15640	0.30	-0.7
3,582,333	-		DDA3937_RS15640	0.34	-0.3
3,582,335	+		DDA3937_RS15640	0.34	+1.5
3,582,336	-		DDA3937_RS15640	0.34	-1.5
3,582,336	-		DDA3937_RS15640	0.34	-0.5
3,582,336	-		DDA3937_RS15640	0.34	-1.3
3,582,336	-		DDA3937_RS15640	0.34	-2.8
3,582,399	+		DDA3937_RS15640	0.39	-2.8
3,582,399	+		DDA3937_RS15640	0.39	+0.7
3,582,400	-		DDA3937_RS15640	0.39	-1.5
3,582,400	-		DDA3937_RS15640	0.39	-0.3
3,582,407	-		DDA3937_RS15640	0.39	-1.6
3,582,407	-		DDA3937_RS15640	0.39	-1.4
3,582,407	-		DDA3937_RS15640	0.39	-0.7
3,582,418	+		DDA3937_RS15640	0.40	-0.8
3,582,418	+		DDA3937_RS15640	0.40	+1.0
3,582,418	+		DDA3937_RS15640	0.40	-1.2
3,582,418	+		DDA3937_RS15640	0.40	-1.4
3,582,418	+		DDA3937_RS15640	0.40	-1.4
3,582,419	-		DDA3937_RS15640	0.40	-2.4
3,582,419	-		DDA3937_RS15640	0.40	-1.5
3,582,419	-		DDA3937_RS15640	0.40	-2.4
3,582,419	-		DDA3937_RS15640	0.40	-2.3
3,582,419	-		DDA3937_RS15640	0.40	-0.6
3,582,419	-		DDA3937_RS15640	0.40	-1.1
3,582,419	-		DDA3937_RS15640	0.40	-0.4
3,582,419	-		DDA3937_RS15640	0.40	-2.5
3,582,419	-		DDA3937_RS15640	0.40	+0.2
3,582,463	+		DDA3937_RS15640	0.43	-2.1
3,582,526	-		DDA3937_RS15640	0.48	-1.6
3,582,601	+		DDA3937_RS15640	0.54	-1.3
3,582,789	+		DDA3937_RS15640	0.68	-0.4