Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15545

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS15530 and DDA3937_RS15535 are separated by 97 nucleotidesDDA3937_RS15535 and DDA3937_RS15540 are separated by 27 nucleotidesDDA3937_RS15540 and DDA3937_RS15545 are separated by 24 nucleotidesDDA3937_RS15545 and DDA3937_RS15550 are separated by 55 nucleotidesDDA3937_RS15550 and DDA3937_RS15555 are separated by 129 nucleotides DDA3937_RS15530: DDA3937_RS15530 - co-chaperone HscB, at 3,557,959 to 3,558,477 _RS15530 DDA3937_RS15535: DDA3937_RS15535 - iron-sulfur cluster assembly protein IscA, at 3,558,575 to 3,558,898 _RS15535 DDA3937_RS15540: DDA3937_RS15540 - Fe-S cluster assembly scaffold IscU, at 3,558,926 to 3,559,309 _RS15540 DDA3937_RS15545: DDA3937_RS15545 - cysteine desulfurase, at 3,559,334 to 3,560,548 _RS15545 DDA3937_RS15550: DDA3937_RS15550 - Fe-S cluster assembly transcriptional regulator IscR, at 3,560,604 to 3,561,098 _RS15550 DDA3937_RS15555: DDA3937_RS15555 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 3,561,228 to 3,561,974 _RS15555 Position (kb) 3559 3560 3561Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3558.781 kb on - strand, within DDA3937_RS15535at 3559.215 kb on - strand, within DDA3937_RS15540at 3559.215 kb on - strand, within DDA3937_RS15540at 3559.278 kb on + strandat 3559.312 kb on + strandat 3559.336 kb on - strandat 3559.540 kb on - strand, within DDA3937_RS15545at 3560.090 kb on + strand, within DDA3937_RS15545at 3560.099 kb on - strand, within DDA3937_RS15545at 3560.565 kb on - strandat 3560.565 kb on - strandat 3560.565 kb on - strandat 3560.638 kb on - strandat 3560.638 kb on - strandat 3561.114 kb on - strandat 3561.158 kb on - strandat 3561.158 kb on - strandat 3561.158 kb on - strandat 3561.158 kb on - strandat 3561.158 kb on - strandat 3561.158 kb on - strandat 3561.158 kb on - strandat 3561.158 kb on - strandat 3561.158 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.162 kb on - strandat 3561.229 kb on + strandat 3561.230 kb on - strandat 3561.294 kb on + strandat 3561.294 kb on + strandat 3561.294 kb on + strandat 3561.294 kb on + strandat 3561.294 kb on + strandat 3561.294 kb on + strandat 3561.295 kb on - strandat 3561.295 kb on - strandat 3561.295 kb on - strandat 3561.295 kb on - strandat 3561.295 kb on - strandat 3561.295 kb on - strandat 3561.296 kb on + strandat 3561.296 kb on + strandat 3561.296 kb on + strandat 3561.296 kb on + strandat 3561.297 kb on - strandat 3561.297 kb on - strandat 3561.297 kb on - strandat 3561.297 kb on - strandat 3561.297 kb on - strandat 3561.297 kb on - strandat 3561.297 kb on - strandat 3561.297 kb on - strandat 3561.297 kb on - strandat 3561.330 kb on - strand, within DDA3937_RS15555at 3561.514 kb on + strand, within DDA3937_RS15555at 3561.515 kb on - strand, within DDA3937_RS15555

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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3,558,781 - DDA3937_RS15535 0.64 +1.8
3,559,215 - DDA3937_RS15540 0.75 -1.7
3,559,215 - DDA3937_RS15540 0.75 -1.6
3,559,278 + +1.6
3,559,312 + -0.3
3,559,336 - +0.0
3,559,540 - DDA3937_RS15545 0.17 +0.0
3,560,090 + DDA3937_RS15545 0.62 -3.1
3,560,099 - DDA3937_RS15545 0.63 -1.2
3,560,565 - +0.1
3,560,565 - +2.7
3,560,565 - +0.2
3,560,638 - +3.5
3,560,638 - +0.1
3,561,114 - -0.3
3,561,158 - -0.4
3,561,158 - -0.5
3,561,158 - +1.6
3,561,158 - -0.5
3,561,158 - -1.0
3,561,158 - +1.1
3,561,158 - +0.1
3,561,158 - +0.7
3,561,158 - -0.9
3,561,162 - +0.3
3,561,162 - -0.1
3,561,162 - +0.9
3,561,162 - -1.2
3,561,162 - -0.3
3,561,162 - +0.2
3,561,162 - -0.6
3,561,162 - -0.2
3,561,162 - -0.6
3,561,162 - +1.0
3,561,162 - +2.4
3,561,162 - -2.8
3,561,162 - -0.2
3,561,162 - +0.2
3,561,162 - +0.0
3,561,162 - -1.8
3,561,229 + -0.4
3,561,230 - +2.5
3,561,294 + +0.1
3,561,294 + -1.3
3,561,294 + +0.4
3,561,294 + -1.5
3,561,294 + -0.3
3,561,294 + -1.4
3,561,295 - -0.3
3,561,295 - -0.4
3,561,295 - -0.1
3,561,295 - +0.1
3,561,295 - +0.4
3,561,295 - -0.5
3,561,296 + -1.0
3,561,296 + -1.0
3,561,296 + -1.3
3,561,296 + +0.2
3,561,297 - -1.2
3,561,297 - -1.4
3,561,297 - +0.1
3,561,297 - +0.1
3,561,297 - +0.5
3,561,297 - -1.9
3,561,297 - -0.7
3,561,297 - -0.3
3,561,297 - +0.7
3,561,330 - DDA3937_RS15555 0.14 -0.4
3,561,514 + DDA3937_RS15555 0.38 +0.9
3,561,515 - DDA3937_RS15555 0.38 -2.0

Or see this region's nucleotide sequence