Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS12995 and DDA3937_RS13000 are separated by 128 nucleotides DDA3937_RS13000 and DDA3937_RS13005 are separated by 293 nucleotides
DDA3937_RS12995: DDA3937_RS12995 - lipoprotein-releasing ABC transporter permease subunit LolC, at 2,963,213 to 2,964,415
_RS12995
DDA3937_RS13000: DDA3937_RS13000 - transcription-repair coupling factor, at 2,964,544 to 2,967,996
_RS13000
DDA3937_RS13005: DDA3937_RS13005 - EAL domain-containing protein, at 2,968,290 to 2,969,795
_RS13005
Position (kb)
2964
2965
2966
2967
2968 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2964.460 kb on - strand at 2964.463 kb on - strand at 2964.470 kb on - strand at 2964.470 kb on - strand at 2964.473 kb on - strand at 2964.476 kb on - strand at 2964.476 kb on - strand at 2964.476 kb on - strand at 2964.567 kb on + strand at 2964.567 kb on + strand at 2964.568 kb on - strand at 2964.568 kb on - strand at 2964.568 kb on - strand at 2964.705 kb on - strand at 2964.840 kb on - strand at 2964.964 kb on - strand, within DDA3937_RS13000 at 2965.280 kb on - strand, within DDA3937_RS13000 at 2965.369 kb on + strand, within DDA3937_RS13000 at 2965.383 kb on + strand, within DDA3937_RS13000 at 2965.383 kb on + strand, within DDA3937_RS13000 at 2965.384 kb on - strand, within DDA3937_RS13000 at 2965.521 kb on + strand at 2965.522 kb on - strand, within DDA3937_RS13000 at 2965.556 kb on + strand, within DDA3937_RS13000 at 2965.816 kb on + strand, within DDA3937_RS13000 at 2965.848 kb on + strand, within DDA3937_RS13000 at 2965.848 kb on + strand, within DDA3937_RS13000 at 2965.848 kb on + strand, within DDA3937_RS13000 at 2965.950 kb on + strand, within DDA3937_RS13000 at 2965.977 kb on - strand, within DDA3937_RS13000 at 2966.024 kb on - strand, within DDA3937_RS13000 at 2966.068 kb on + strand, within DDA3937_RS13000 at 2966.104 kb on + strand, within DDA3937_RS13000 at 2966.105 kb on - strand, within DDA3937_RS13000 at 2966.315 kb on - strand, within DDA3937_RS13000 at 2966.315 kb on - strand, within DDA3937_RS13000 at 2966.699 kb on + strand, within DDA3937_RS13000 at 2966.700 kb on - strand, within DDA3937_RS13000 at 2966.983 kb on + strand, within DDA3937_RS13000 at 2966.983 kb on + strand, within DDA3937_RS13000 at 2966.984 kb on - strand, within DDA3937_RS13000 at 2966.987 kb on - strand, within DDA3937_RS13000 at 2966.993 kb on - strand, within DDA3937_RS13000 at 2967.277 kb on + strand, within DDA3937_RS13000 at 2967.278 kb on - strand, within DDA3937_RS13000 at 2967.283 kb on + strand, within DDA3937_RS13000 at 2967.469 kb on + strand, within DDA3937_RS13000 at 2967.469 kb on + strand, within DDA3937_RS13000 at 2967.470 kb on - strand, within DDA3937_RS13000 at 2967.470 kb on - strand, within DDA3937_RS13000 at 2967.470 kb on - strand, within DDA3937_RS13000 at 2967.470 kb on - strand, within DDA3937_RS13000 at 2967.470 kb on - strand, within DDA3937_RS13000 at 2967.822 kb on + strand at 2967.870 kb on + strand at 2967.949 kb on - strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.981 kb on + strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.982 kb on - strand at 2967.985 kb on + strand at 2967.985 kb on + strand at 2967.985 kb on + strand at 2967.985 kb on + strand at 2967.985 kb on + strand at 2967.985 kb on + strand at 2967.985 kb on + strand at 2967.985 kb on + strand at 2967.985 kb on + strand at 2967.986 kb on - strand at 2967.986 kb on - strand at 2967.986 kb on - strand at 2968.030 kb on + strand at 2968.054 kb on + strand at 2968.054 kb on + strand at 2968.055 kb on - strand at 2968.055 kb on - strand at 2968.055 kb on - strand at 2968.055 kb on - strand at 2968.055 kb on - strand at 2968.055 kb on - strand at 2968.056 kb on + strand at 2968.056 kb on + strand at 2968.056 kb on + strand at 2968.056 kb on + strand at 2968.056 kb on + strand at 2968.056 kb on + strand at 2968.056 kb on + strand at 2968.056 kb on + strand at 2968.056 kb on + strand at 2968.057 kb on - strand at 2968.057 kb on - strand at 2968.057 kb on - strand at 2968.057 kb on - strand at 2968.057 kb on - strand at 2968.057 kb on - strand at 2968.057 kb on - strand at 2968.057 kb on - strand at 2968.067 kb on + strand at 2968.081 kb on + strand at 2968.118 kb on + strand at 2968.197 kb on + strand at 2968.198 kb on - strand at 2968.226 kb on + strand at 2968.227 kb on - strand at 2968.227 kb on - strand at 2968.227 kb on - strand at 2968.261 kb on + strand at 2968.262 kb on - strand at 2968.262 kb on - strand at 2968.264 kb on - strand at 2968.264 kb on - strand at 2968.264 kb on - strand at 2968.264 kb on - strand at 2968.264 kb on - strand at 2968.264 kb on - strand at 2968.264 kb on - strand at 2968.283 kb on + strand at 2968.284 kb on - strand at 2968.296 kb on - strand at 2968.322 kb on - strand at 2968.354 kb on - strand at 2968.357 kb on - strand at 2968.357 kb on - strand at 2968.370 kb on + strand at 2968.370 kb on + strand at 2968.371 kb on - strand at 2968.389 kb on + strand at 2968.427 kb on + strand at 2968.428 kb on - strand at 2968.428 kb on - strand at 2968.514 kb on + strand, within DDA3937_RS13005 at 2968.514 kb on + strand, within DDA3937_RS13005 at 2968.515 kb on - strand, within DDA3937_RS13005 at 2968.515 kb on - strand, within DDA3937_RS13005 at 2968.515 kb on - strand, within DDA3937_RS13005 at 2968.575 kb on + strand, within DDA3937_RS13005 at 2968.575 kb on + strand, within DDA3937_RS13005 at 2968.575 kb on + strand, within DDA3937_RS13005 at 2968.575 kb on + strand, within DDA3937_RS13005 at 2968.575 kb on + strand, within DDA3937_RS13005 at 2968.576 kb on - strand, within DDA3937_RS13005 at 2968.632 kb on - strand, within DDA3937_RS13005 at 2968.688 kb on + strand, within DDA3937_RS13005 at 2968.688 kb on + strand, within DDA3937_RS13005 at 2968.688 kb on + strand, within DDA3937_RS13005 at 2968.688 kb on + strand, within DDA3937_RS13005 at 2968.688 kb on + strand, within DDA3937_RS13005 at 2968.689 kb on - strand at 2968.689 kb on - strand, within DDA3937_RS13005 at 2968.689 kb on - strand, within DDA3937_RS13005 at 2968.692 kb on + strand, within DDA3937_RS13005 at 2968.692 kb on + strand, within DDA3937_RS13005 at 2968.692 kb on + strand, within DDA3937_RS13005 at 2968.692 kb on + strand at 2968.693 kb on - strand, within DDA3937_RS13005 at 2968.693 kb on - strand, within DDA3937_RS13005 at 2968.693 kb on - strand, within DDA3937_RS13005 at 2968.732 kb on + strand, within DDA3937_RS13005 at 2968.732 kb on + strand, within DDA3937_RS13005 at 2968.732 kb on + strand, within DDA3937_RS13005 at 2968.732 kb on + strand, within DDA3937_RS13005 at 2968.732 kb on + strand, within DDA3937_RS13005 at 2968.732 kb on + strand, within DDA3937_RS13005 at 2968.733 kb on - strand, within DDA3937_RS13005 at 2968.733 kb on - strand, within DDA3937_RS13005 at 2968.733 kb on - strand, within DDA3937_RS13005 at 2968.733 kb on - strand, within DDA3937_RS13005 at 2968.733 kb on - strand, within DDA3937_RS13005 at 2968.733 kb on - strand, within DDA3937_RS13005 at 2968.805 kb on + strand, within DDA3937_RS13005 at 2968.826 kb on + strand, within DDA3937_RS13005 at 2968.826 kb on + strand, within DDA3937_RS13005 at 2968.827 kb on - strand, within DDA3937_RS13005 at 2968.841 kb on + strand, within DDA3937_RS13005 at 2968.868 kb on + strand, within DDA3937_RS13005 at 2968.869 kb on - strand, within DDA3937_RS13005 at 2968.872 kb on - strand, within DDA3937_RS13005 at 2968.923 kb on + strand, within DDA3937_RS13005 at 2968.923 kb on + strand, within DDA3937_RS13005 at 2968.923 kb on + strand, within DDA3937_RS13005 at 2968.923 kb on + strand at 2968.923 kb on + strand, within DDA3937_RS13005 at 2968.924 kb on - strand, within DDA3937_RS13005 at 2968.924 kb on - strand, within DDA3937_RS13005
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 2,964,460 - -0.5 2,964,463 - -0.5 2,964,470 - -0.8 2,964,470 - -2.9 2,964,473 - -1.3 2,964,476 - -1.4 2,964,476 - -0.9 2,964,476 - -1.2 2,964,567 + -1.7 2,964,567 + -0.1 2,964,568 - -1.5 2,964,568 - -1.9 2,964,568 - -2.5 2,964,705 - +1.0 2,964,840 - -1.9 2,964,964 - DDA3937_RS13000 0.12 -1.7 2,965,280 - DDA3937_RS13000 0.21 +0.1 2,965,369 + DDA3937_RS13000 0.24 -1.4 2,965,383 + DDA3937_RS13000 0.24 -0.3 2,965,383 + DDA3937_RS13000 0.24 -1.1 2,965,384 - DDA3937_RS13000 0.24 -1.5 2,965,521 + +1.5 2,965,522 - DDA3937_RS13000 0.28 -1.9 2,965,556 + DDA3937_RS13000 0.29 -0.8 2,965,816 + DDA3937_RS13000 0.37 +0.6 2,965,848 + DDA3937_RS13000 0.38 -0.2 2,965,848 + DDA3937_RS13000 0.38 -0.7 2,965,848 + DDA3937_RS13000 0.38 -1.7 2,965,950 + DDA3937_RS13000 0.41 -0.7 2,965,977 - DDA3937_RS13000 0.42 -1.7 2,966,024 - DDA3937_RS13000 0.43 -0.7 2,966,068 + DDA3937_RS13000 0.44 -3.4 2,966,104 + DDA3937_RS13000 0.45 -2.3 2,966,105 - DDA3937_RS13000 0.45 -2.1 2,966,315 - DDA3937_RS13000 0.51 -1.3 2,966,315 - DDA3937_RS13000 0.51 -0.5 2,966,699 + DDA3937_RS13000 0.62 -1.9 2,966,700 - DDA3937_RS13000 0.62 -0.7 2,966,983 + DDA3937_RS13000 0.71 +0.6 2,966,983 + DDA3937_RS13000 0.71 -0.4 2,966,984 - DDA3937_RS13000 0.71 -0.2 2,966,987 - DDA3937_RS13000 0.71 -0.7 2,966,993 - DDA3937_RS13000 0.71 -0.6 2,967,277 + DDA3937_RS13000 0.79 +0.7 2,967,278 - DDA3937_RS13000 0.79 +0.1 2,967,283 + DDA3937_RS13000 0.79 -0.3 2,967,469 + DDA3937_RS13000 0.85 +1.7 2,967,469 + DDA3937_RS13000 0.85 -1.1 2,967,470 - DDA3937_RS13000 0.85 -1.4 2,967,470 - DDA3937_RS13000 0.85 -0.9 2,967,470 - DDA3937_RS13000 0.85 -1.1 2,967,470 - DDA3937_RS13000 0.85 +0.1 2,967,470 - DDA3937_RS13000 0.85 -2.3 2,967,822 + +1.1 2,967,870 + +0.1 2,967,949 - -0.8 2,967,981 + -0.3 2,967,981 + +0.6 2,967,981 + +2.1 2,967,981 + +0.5 2,967,981 + -2.3 2,967,981 + +0.6 2,967,981 + -2.2 2,967,981 + +0.6 2,967,981 + -0.4 2,967,981 + -0.3 2,967,981 + -2.6 2,967,981 + -1.5 2,967,981 + -0.3 2,967,981 + +0.2 2,967,981 + +3.2 2,967,982 - -2.1 2,967,982 - -1.9 2,967,982 - +0.3 2,967,982 - +0.5 2,967,982 - +0.4 2,967,982 - +0.9 2,967,982 - -0.2 2,967,982 - -1.9 2,967,982 - +1.1 2,967,982 - -0.4 2,967,982 - -2.3 2,967,982 - -1.5 2,967,982 - -3.0 2,967,982 - +5.9 2,967,982 - -1.7 2,967,982 - -1.5 2,967,982 - +2.3 2,967,982 - -0.9 2,967,982 - -1.5 2,967,982 - +0.1 2,967,982 - -1.9 2,967,982 - -1.4 2,967,982 - -1.1 2,967,985 + +1.3 2,967,985 + -0.4 2,967,985 + +0.3 2,967,985 + -1.2 2,967,985 + +0.9 2,967,985 + +0.3 2,967,985 + -1.1 2,967,985 + +2.8 2,967,985 + -1.5 2,967,986 - +0.2 2,967,986 - -2.5 2,967,986 - -0.3 2,968,030 + +1.9 2,968,054 + -0.0 2,968,054 + +0.5 2,968,055 - -1.7 2,968,055 - +0.1 2,968,055 - +0.6 2,968,055 - +1.5 2,968,055 - -0.6 2,968,055 - +0.1 2,968,056 + +1.9 2,968,056 + -1.1 2,968,056 + -0.7 2,968,056 + -0.5 2,968,056 + -0.3 2,968,056 + -0.6 2,968,056 + +1.1 2,968,056 + +0.5 2,968,056 + +0.1 2,968,057 - -0.1 2,968,057 - +1.1 2,968,057 - +1.1 2,968,057 - -1.5 2,968,057 - +0.9 2,968,057 - +0.8 2,968,057 - +0.6 2,968,057 - -0.7 2,968,067 + +3.5 2,968,081 + +3.1 2,968,118 + +1.1 2,968,197 + -1.6 2,968,198 - -0.0 2,968,226 + -0.5 2,968,227 - -1.3 2,968,227 - -2.7 2,968,227 - +1.5 2,968,261 + -0.6 2,968,262 - -0.7 2,968,262 - +1.7 2,968,264 - +0.1 2,968,264 - +1.6 2,968,264 - +0.3 2,968,264 - +0.8 2,968,264 - +0.5 2,968,264 - +0.3 2,968,264 - -0.2 2,968,283 + +0.4 2,968,284 - -1.3 2,968,296 - -1.7 2,968,322 - -0.8 2,968,354 - +0.9 2,968,357 - -0.7 2,968,357 - -1.3 2,968,370 + -1.1 2,968,370 + -1.7 2,968,371 - +1.1 2,968,389 + -0.9 2,968,427 + -2.1 2,968,428 - -0.9 2,968,428 - +0.3 2,968,514 + DDA3937_RS13005 0.15 -0.6 2,968,514 + DDA3937_RS13005 0.15 -1.5 2,968,515 - DDA3937_RS13005 0.15 +1.6 2,968,515 - DDA3937_RS13005 0.15 -0.2 2,968,515 - DDA3937_RS13005 0.15 +1.4 2,968,575 + DDA3937_RS13005 0.19 -1.9 2,968,575 + DDA3937_RS13005 0.19 -0.3 2,968,575 + DDA3937_RS13005 0.19 -1.5 2,968,575 + DDA3937_RS13005 0.19 +3.1 2,968,575 + DDA3937_RS13005 0.19 +0.1 2,968,576 - DDA3937_RS13005 0.19 +0.3 2,968,632 - DDA3937_RS13005 0.23 -0.2 2,968,688 + DDA3937_RS13005 0.26 -1.9 2,968,688 + DDA3937_RS13005 0.26 -0.8 2,968,688 + DDA3937_RS13005 0.26 +3.1 2,968,688 + DDA3937_RS13005 0.26 +0.1 2,968,688 + DDA3937_RS13005 0.26 -0.4 2,968,689 - +0.1 2,968,689 - DDA3937_RS13005 0.26 +0.3 2,968,689 - DDA3937_RS13005 0.26 -0.3 2,968,692 + DDA3937_RS13005 0.27 +1.3 2,968,692 + DDA3937_RS13005 0.27 -1.0 2,968,692 + DDA3937_RS13005 0.27 -0.8 2,968,692 + +0.6 2,968,693 - DDA3937_RS13005 0.27 -0.2 2,968,693 - DDA3937_RS13005 0.27 -0.7 2,968,693 - DDA3937_RS13005 0.27 +1.2 2,968,732 + DDA3937_RS13005 0.29 -1.8 2,968,732 + DDA3937_RS13005 0.29 -0.8 2,968,732 + DDA3937_RS13005 0.29 -1.7 2,968,732 + DDA3937_RS13005 0.29 +0.1 2,968,732 + DDA3937_RS13005 0.29 -1.6 2,968,732 + DDA3937_RS13005 0.29 +0.3 2,968,733 - DDA3937_RS13005 0.29 -1.3 2,968,733 - DDA3937_RS13005 0.29 +0.5 2,968,733 - DDA3937_RS13005 0.29 +1.2 2,968,733 - DDA3937_RS13005 0.29 -1.3 2,968,733 - DDA3937_RS13005 0.29 -1.9 2,968,733 - DDA3937_RS13005 0.29 -0.4 2,968,805 + DDA3937_RS13005 0.34 -0.8 2,968,826 + DDA3937_RS13005 0.36 +1.6 2,968,826 + DDA3937_RS13005 0.36 +0.1 2,968,827 - DDA3937_RS13005 0.36 -0.1 2,968,841 + DDA3937_RS13005 0.37 -1.0 2,968,868 + DDA3937_RS13005 0.38 -0.7 2,968,869 - DDA3937_RS13005 0.38 +0.1 2,968,872 - DDA3937_RS13005 0.39 +0.3 2,968,923 + DDA3937_RS13005 0.42 +0.4 2,968,923 + DDA3937_RS13005 0.42 +1.6 2,968,923 + DDA3937_RS13005 0.42 +1.1 2,968,923 + +0.1 2,968,923 + DDA3937_RS13005 0.42 -0.5 2,968,924 - DDA3937_RS13005 0.42 +0.4 2,968,924 - DDA3937_RS13005 0.42 -1.5
Or see this region's nucleotide sequence