Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12885

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,934,922	+		DDA3937_RS12875	0.87	+0.9
2,934,923	-		DDA3937_RS12875	0.87	-1.0
2,935,004	+				+1.0
2,935,004	+				-0.6
2,935,005	-				-1.3
2,935,005	-				+0.1
2,935,028	+				-0.3
2,935,029	-				+0.8
2,935,106	+		DDA3937_RS12880	0.11	-2.7
2,935,106	+		DDA3937_RS12880	0.11	+0.6
2,935,106	+				+0.0
2,935,107	-		DDA3937_RS12880	0.11	-0.2
2,935,107	-		DDA3937_RS12880	0.11	+0.3
2,935,109	+		DDA3937_RS12880	0.11	+1.6
2,935,109	+		DDA3937_RS12880	0.11	+0.9
2,935,109	+		DDA3937_RS12880	0.11	-0.5
2,935,109	+		DDA3937_RS12880	0.11	-0.3
2,935,110	-		DDA3937_RS12880	0.11	-0.5
2,935,306	+		DDA3937_RS12880	0.36	-0.5
2,935,309	+		DDA3937_RS12880	0.36	-0.5
2,935,310	-		DDA3937_RS12880	0.37	-0.0
2,935,495	+		DDA3937_RS12880	0.60	-0.2
2,935,496	-		DDA3937_RS12880	0.60	+0.5
2,935,833	-				-1.3
2,935,834	+				-1.9
2,935,835	-				+0.0
2,935,877	-				-0.0
2,935,881	+				-0.6
2,935,881	+				+0.3
2,935,881	+				-1.6
2,935,887	+				-0.4
2,936,024	-				-2.3
2,936,117	-				+0.6
2,936,470	+		DDA3937_RS12885	0.21	+0.0
2,936,471	-		DDA3937_RS12885	0.21	+2.0
2,936,471	-		DDA3937_RS12885	0.21	-0.7
2,936,471	-		DDA3937_RS12885	0.21	+4.1
2,936,471	-		DDA3937_RS12885	0.21	+1.4
2,936,527	+		DDA3937_RS12885	0.23	+0.0
2,936,806	+		DDA3937_RS12885	0.34	-1.5
2,936,806	+		DDA3937_RS12885	0.34	-0.3
2,936,806	+				+0.0
2,936,806	+		DDA3937_RS12885	0.34	+1.3
2,936,806	+		DDA3937_RS12885	0.34	+1.3
2,936,806	+		DDA3937_RS12885	0.34	-2.1
2,936,807	-		DDA3937_RS12885	0.34	-2.0
2,936,807	-		DDA3937_RS12885	0.34	+1.4
2,936,807	-		DDA3937_RS12885	0.34	+0.3
2,936,807	-		DDA3937_RS12885	0.34	+1.0
2,936,807	-		DDA3937_RS12885	0.34	+0.5
2,936,899	+				+0.0
2,936,899	+		DDA3937_RS12885	0.38	-1.3
2,936,899	+		DDA3937_RS12885	0.38	+0.6
2,936,900	-		DDA3937_RS12885	0.38	-1.4
2,936,911	-		DDA3937_RS12885	0.38	-0.7
2,936,970	+		DDA3937_RS12885	0.40	+0.1
2,936,970	+		DDA3937_RS12885	0.40	-1.1
2,936,970	+		DDA3937_RS12885	0.40	+0.7
2,936,971	-		DDA3937_RS12885	0.40	+0.2
2,936,971	-		DDA3937_RS12885	0.40	+1.3
2,936,971	-		DDA3937_RS12885	0.40	+2.0
2,936,971	-		DDA3937_RS12885	0.40	-0.2
2,937,061	+		DDA3937_RS12885	0.44	+0.1
2,937,061	+		DDA3937_RS12885	0.44	-0.2
2,937,061	+		DDA3937_RS12885	0.44	-1.5
2,937,061	+		DDA3937_RS12885	0.44	+1.0
2,937,062	-		DDA3937_RS12885	0.44	-3.3
2,937,062	-		DDA3937_RS12885	0.44	+0.6
2,937,062	-		DDA3937_RS12885	0.44	+0.3
2,937,084	-		DDA3937_RS12885	0.45	-1.8
2,937,169	+		DDA3937_RS12885	0.48	+0.9
2,937,170	-		DDA3937_RS12885	0.48	+0.8
2,937,212	-		DDA3937_RS12885	0.50	+0.0
2,937,310	+				+3.8
2,937,310	+		DDA3937_RS12885	0.53	-0.5
2,937,311	-		DDA3937_RS12885	0.53	-0.8
2,937,311	-		DDA3937_RS12885	0.53	-0.5
2,937,362	+		DDA3937_RS12885	0.55	-1.8
2,937,362	+		DDA3937_RS12885	0.55	-1.0
2,937,362	+		DDA3937_RS12885	0.55	-1.8
2,937,363	-		DDA3937_RS12885	0.55	-0.2
2,937,363	-		DDA3937_RS12885	0.55	+0.6
2,937,363	-		DDA3937_RS12885	0.55	+0.3
2,937,363	-		DDA3937_RS12885	0.55	+0.3
2,937,388	+		DDA3937_RS12885	0.56	+0.8
2,937,388	+		DDA3937_RS12885	0.56	-1.1
2,937,401	+		DDA3937_RS12885	0.57	-1.2
2,937,403	+		DDA3937_RS12885	0.57	+0.0
2,937,403	+		DDA3937_RS12885	0.57	-0.9
2,937,403	+		DDA3937_RS12885	0.57	-1.5
2,937,403	+		DDA3937_RS12885	0.57	-1.8
2,937,404	-		DDA3937_RS12885	0.57	+2.0
2,937,404	-		DDA3937_RS12885	0.57	-0.5
2,937,410	+		DDA3937_RS12885	0.57	+1.5
2,937,410	+		DDA3937_RS12885	0.57	+0.4
2,937,411	-		DDA3937_RS12885	0.57	-1.3
2,937,411	-		DDA3937_RS12885	0.57	+0.2
2,937,411	-		DDA3937_RS12885	0.57	-0.9
2,937,411	-		DDA3937_RS12885	0.57	+1.0
2,937,411	-		DDA3937_RS12885	0.57	-0.4
2,937,411	-		DDA3937_RS12885	0.57	+1.2
2,937,501	-		DDA3937_RS12885	0.61	-1.4
2,937,506	+		DDA3937_RS12885	0.61	-0.5
2,937,507	-		DDA3937_RS12885	0.61	+0.6
2,937,582	-		DDA3937_RS12885	0.64	+0.0
2,937,627	-		DDA3937_RS12885	0.65	-1.0
2,937,634	+		DDA3937_RS12885	0.66	-1.0
2,937,668	-		DDA3937_RS12885	0.67	-2.0
2,937,668	-		DDA3937_RS12885	0.67	-1.3
2,937,706	+		DDA3937_RS12885	0.69	+0.4
2,937,706	+		DDA3937_RS12885	0.69	+0.0
2,937,706	+		DDA3937_RS12885	0.69	+0.0
2,937,706	+		DDA3937_RS12885	0.69	-1.4
2,937,706	+		DDA3937_RS12885	0.69	-1.3
2,937,706	+		DDA3937_RS12885	0.69	+0.6
2,937,706	+		DDA3937_RS12885	0.69	-0.1
2,937,706	+		DDA3937_RS12885	0.69	+1.0
2,937,706	+		DDA3937_RS12885	0.69	+1.4
2,937,707	-		DDA3937_RS12885	0.69	-1.0
2,937,707	-		DDA3937_RS12885	0.69	-0.6
2,937,707	-		DDA3937_RS12885	0.69	-1.1
2,937,707	-		DDA3937_RS12885	0.69	-0.5
2,937,707	-		DDA3937_RS12885	0.69	-1.2
2,937,779	+		DDA3937_RS12885	0.71	-1.6
2,937,780	-		DDA3937_RS12885	0.71	-1.5
2,937,780	-		DDA3937_RS12885	0.71	-0.2
2,937,780	-		DDA3937_RS12885	0.71	+2.0
2,937,780	-		DDA3937_RS12885	0.71	-0.0
2,937,780	-		DDA3937_RS12885	0.71	+0.3
2,937,780	-		DDA3937_RS12885	0.71	-1.0
2,937,781	+		DDA3937_RS12885	0.71	-0.5
2,937,781	+		DDA3937_RS12885	0.71	+0.0
2,937,781	+		DDA3937_RS12885	0.71	-0.1
2,937,781	+		DDA3937_RS12885	0.71	-0.5
2,937,781	+		DDA3937_RS12885	0.71	-0.1
2,937,781	+		DDA3937_RS12885	0.71	-1.0
2,937,781	+		DDA3937_RS12885	0.71	+4.9
2,937,781	+		DDA3937_RS12885	0.71	-0.2
2,937,781	+		DDA3937_RS12885	0.71	+0.7
2,937,781	+		DDA3937_RS12885	0.71	+1.9
2,937,781	+		DDA3937_RS12885	0.71	-1.8
2,937,781	+		DDA3937_RS12885	0.71	+4.4
2,937,782	-		DDA3937_RS12885	0.71	+0.5
2,937,782	-		DDA3937_RS12885	0.71	+1.4
2,937,782	-		DDA3937_RS12885	0.71	+0.2
2,937,782	-		DDA3937_RS12885	0.71	-0.6
2,937,782	-		DDA3937_RS12885	0.71	-0.6
2,937,782	-		DDA3937_RS12885	0.71	-1.3
2,937,796	+		DDA3937_RS12885	0.72	+0.0
2,937,796	+		DDA3937_RS12885	0.72	+0.5
2,937,796	+		DDA3937_RS12885	0.72	+0.8
2,937,796	+		DDA3937_RS12885	0.72	-1.5
2,937,797	-		DDA3937_RS12885	0.72	-3.2
2,937,797	-		DDA3937_RS12885	0.72	+0.6
2,937,976	+		DDA3937_RS12885	0.79	+6.3
2,938,069	+		DDA3937_RS12885	0.82	-0.3
2,938,070	-		DDA3937_RS12885	0.82	-2.1
2,938,070	-		DDA3937_RS12885	0.82	+0.1
2,938,138	+		DDA3937_RS12885	0.85	+0.6
2,938,138	+		DDA3937_RS12885	0.85	+1.0
2,938,138	+		DDA3937_RS12885	0.85	+0.8
2,938,139	-		DDA3937_RS12885	0.85	+1.3
2,938,139	-		DDA3937_RS12885	0.85	+0.6
2,938,141	+		DDA3937_RS12885	0.85	+0.2
2,938,141	+		DDA3937_RS12885	0.85	-0.1
2,938,141	+		DDA3937_RS12885	0.85	-1.5
2,938,141	+		DDA3937_RS12885	0.85	-0.1
2,938,141	+		DDA3937_RS12885	0.85	-1.8
2,938,141	+		DDA3937_RS12885	0.85	+1.4
2,938,141	+		DDA3937_RS12885	0.85	-0.3
2,938,141	+		DDA3937_RS12885	0.85	+0.9
2,938,142	-		DDA3937_RS12885	0.85	+1.6
2,938,142	-		DDA3937_RS12885	0.85	+1.0
2,938,142	-				+2.4
2,938,142	-		DDA3937_RS12885	0.85	-0.5
2,938,142	-		DDA3937_RS12885	0.85	-1.8
2,938,202	-		DDA3937_RS12885	0.87	+0.2
2,938,202	-		DDA3937_RS12885	0.87	+0.5
2,938,202	-		DDA3937_RS12885	0.87	-0.4
2,938,202	-		DDA3937_RS12885	0.87	+0.8
2,938,202	-		DDA3937_RS12885	0.87	+0.8
2,938,202	-		DDA3937_RS12885	0.87	+0.0
2,938,202	-		DDA3937_RS12885	0.87	-0.7
2,938,202	-		DDA3937_RS12885	0.87	-1.0
2,938,348	-				+0.7
2,938,475	+				-0.2
2,938,475	+				-1.3
2,938,476	-				-1.5
2,938,476	-				+0.4
2,938,476	-				-1.0
2,938,476	-				+0.2
2,938,476	-				+1.6
2,938,476	-				-1.4
2,938,476	-				-1.0
2,938,476	-				+0.0
2,938,476	-				+0.3
2,938,476	-				+1.6
2,938,476	-				+0.0
2,938,477	+				+0.2
2,938,478	-				+0.9
2,938,478	-				-1.5
2,938,504	+				-2.0
2,938,504	+				+1.2
2,938,537	+				-1.3
2,938,537	+				+1.5
2,938,537	+				+0.3
2,938,537	+				-1.5
2,938,537	+				-2.0
2,938,537	+				+0.0
2,938,538	-				-1.2
2,938,538	-				-2.2
2,938,538	-				-2.8
2,938,538	-				+1.5
2,938,554	+				+0.9
2,938,554	+				-2.8
2,938,554	+				-2.4
2,938,555	-				-0.5
2,938,555	-				-0.6
2,938,555	-				-0.2
2,938,601	-				-1.1
2,938,603	+				-1.0
2,938,603	+				+0.2
2,938,603	+				-1.1
2,938,603	+				+2.0
2,938,604	-				+0.0
2,938,604	-				-1.2
2,938,604	-				-0.1
2,938,604	-				+0.6
2,938,604	-				-1.0
2,938,604	-				-1.0
2,938,604	-				+4.4
2,938,604	-				+0.7
2,938,630	-				-0.1
2,938,691	+				-2.3
2,938,691	+				+0.0
2,938,691	+				+1.3
2,938,691	+				-0.5
2,938,691	+				+0.5
2,938,691	+				+0.5
2,938,692	-				-1.4
2,938,692	-				+2.8
2,938,692	-				+1.6
2,938,692	-				+0.8
2,938,692	-				+1.3
2,938,695	+				-0.2
2,938,695	+				+0.0
2,938,695	+				+0.0
2,938,695	+				-0.5
2,938,695	+				-1.2
2,938,695	+				+1.4
2,938,696	-				-0.2
2,938,696	-				-1.3
2,938,707	+				-1.5
2,938,708	-				+0.5
2,938,708	-				-1.0
2,938,711	+				-1.4
2,938,712	-				-0.0
2,938,712	-				-0.6
2,938,712	-				+0.7
2,938,722	+				+0.4
2,938,722	+				+0.0
2,938,723	-				-2.0
2,938,723	-				-1.6
2,938,723	-				+0.2
2,938,782	-				+1.5
2,938,782	-				+0.5
2,938,782	-				+0.6
2,938,782	-				-1.0
2,938,782	-				-0.5
2,938,782	-				-0.3
2,938,782	-				+0.1
2,938,796	-				-1.2
2,938,813	+				-0.8
2,938,813	+				-2.0
2,938,821	-				+0.3
2,938,848	+				+0.3
2,938,848	+				+0.0
2,938,848	+				+0.0
2,938,849	-				-0.2
2,938,849	-				-0.3
2,938,849	-				+0.2
2,938,849	-				+0.1
2,938,849	-				+0.2
2,938,855	-				-0.8
2,938,855	-				-0.5
2,938,857	+				+0.6
2,938,858	-				-1.0
2,938,858	-				+0.5
2,939,048	+				-1.0
2,939,048	+				-0.4
2,939,048	+				-2.5
2,939,048	+				-0.4
2,939,048	+				-1.3
2,939,048	+				+0.3
2,939,049	-				-1.5
2,939,049	-				+4.4
2,939,049	-				+0.0
2,939,049	-				+0.1
2,939,049	-				-1.0
2,939,049	-				+1.2
2,939,049	-				+0.4
2,939,049	-				+0.1
2,939,049	-				-1.4
2,939,049	-				-0.9
2,939,049	-				+1.6
2,939,058	+				-0.4
2,939,059	-				+0.5
2,939,059	-				-0.4
2,939,059	-				+2.5
2,939,059	-				-0.4
2,939,059	-				+0.2
2,939,118	+				-1.0
2,939,118	+				-1.5
2,939,119	-				-0.3
2,939,119	-				+1.3
2,939,119	-				+0.5
2,939,119	-				+1.1
2,939,119	-				-0.1
2,939,119	-				+2.1
2,939,125	+				-1.0
2,939,125	+				+0.5
2,939,125	+				-0.5
2,939,126	-				+0.0
2,939,126	-				+0.2
2,939,135	+				+0.4
2,939,158	+				+0.5
2,939,158	+				+0.6
2,939,159	-				+0.7
2,939,159	-				-0.1
2,939,159	-				+0.7
2,939,166	+				+0.8
2,939,166	+				-1.9
2,939,167	-				+1.0
2,939,167	-				-0.1
2,939,167	-				-1.1
2,939,210	+				+0.2
2,939,210	+				+0.1
2,939,211	-				+1.1
2,939,211	-				-0.1
2,939,211	-				-0.0
2,939,212	+				-0.4
2,939,212	+				+1.0
2,939,212	+				+1.0
2,939,213	-				+0.2
2,939,213	-				-0.1
2,939,213	-				+0.8
2,939,213	-				-0.3
2,939,237	+				-1.2
2,939,237	+				-2.3
2,939,237	+				-1.0
2,939,237	+				-1.0
2,939,237	+				-0.5
2,939,237	+				+0.1
2,939,238	-				-1.9
2,939,238	-				+1.3
2,939,238	-				+0.3
2,939,246	+				-1.8
2,939,246	+				+0.5
2,939,246	+				-1.0
2,939,247	-				-0.4
2,939,247	-				-0.1
2,939,247	-				-0.8
2,939,247	-				-1.5
2,939,247	-				-2.1
2,939,262	+				+2.0
2,939,263	-				+0.8
2,939,263	-				-0.8
2,939,263	-				+0.5
2,939,263	-				+0.0
2,939,298	+		DDA3937_RS12890	0.12	+0.7
2,939,298	+				+1.0
2,939,299	-		DDA3937_RS12890	0.12	-1.1
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2,939,306	+		DDA3937_RS12890	0.12	-0.4
2,939,306	+		DDA3937_RS12890	0.12	-3.9
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2,939,307	-		DDA3937_RS12890	0.12	-0.6
2,939,307	-		DDA3937_RS12890	0.12	+4.5
2,939,307	-		DDA3937_RS12890	0.12	-0.6
2,939,307	-		DDA3937_RS12890	0.12	-0.2
2,939,307	-		DDA3937_RS12890	0.12	-0.6
2,939,307	-		DDA3937_RS12890	0.12	+1.3
2,939,307	-		DDA3937_RS12890	0.12	+0.2
2,939,315	-		DDA3937_RS12890	0.13	+2.0
2,939,332	-		DDA3937_RS12890	0.14	+0.4
2,939,369	+		DDA3937_RS12890	0.17	+0.7
2,939,369	+		DDA3937_RS12890	0.17	+0.1
2,939,369	+		DDA3937_RS12890	0.17	+1.2
2,939,370	-		DDA3937_RS12890	0.17	+0.8
2,939,370	-		DDA3937_RS12890	0.17	-1.7
2,939,370	-		DDA3937_RS12890	0.17	-1.7
2,939,370	-		DDA3937_RS12890	0.17	-0.0
2,939,376	-		DDA3937_RS12890	0.18	-1.5
2,939,376	-		DDA3937_RS12890	0.18	+2.1
2,939,483	-		DDA3937_RS12890	0.27	+1.0
2,939,488	+		DDA3937_RS12890	0.27	-0.1
2,939,488	+		DDA3937_RS12890	0.27	+0.4