Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10845

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,442,216	+		DDA3937_RS10840	0.26	-1.6
2,442,217	-		DDA3937_RS10840	0.26	-1.1
2,442,260	+		DDA3937_RS10840	0.29	-1.7
2,442,260	+		DDA3937_RS10840	0.29	-1.1
2,442,260	+		DDA3937_RS10840	0.29	-1.0
2,442,260	+		DDA3937_RS10840	0.29	-1.5
2,442,261	-		DDA3937_RS10840	0.29	+2.0
2,442,261	-		DDA3937_RS10840	0.29	+0.6
2,442,261	-		DDA3937_RS10840	0.29	-1.6
2,442,274	+		DDA3937_RS10840	0.30	-0.5
2,442,709	-		DDA3937_RS10840	0.63	-1.2
2,442,964	+		DDA3937_RS10840	0.83	-0.7
2,442,968	+		DDA3937_RS10840	0.83	-1.3
2,442,968	+		DDA3937_RS10840	0.83	-0.1
2,442,968	+		DDA3937_RS10840	0.83	-1.8
2,442,969	-		DDA3937_RS10840	0.83	-1.0
2,442,969	-		DDA3937_RS10840	0.83	-0.4
2,442,969	-		DDA3937_RS10840	0.83	-0.2
2,442,969	-		DDA3937_RS10840	0.83	-0.1
2,442,969	-		DDA3937_RS10840	0.83	+0.5
2,442,969	-		DDA3937_RS10840	0.83	+0.9
2,443,132	+				-1.3
2,443,132	+				-1.6
2,443,133	-				-0.9
2,443,133	-				-1.7
2,443,133	-				-1.1
2,443,190	+				-1.7
2,443,191	-				-1.7
2,443,191	-				-1.9
2,443,217	-				+0.9
2,443,217	-				-0.4
2,443,230	+				-3.4
2,443,251	+				+0.2
2,443,354	+				+0.3
2,443,354	+				-2.4
2,443,355	-				-0.3
2,443,375	+				-0.7
2,443,433	-				-2.8
2,443,433	-				-0.7
2,443,469	+				-0.7
2,443,469	+				+0.3
2,443,470	-				-1.2
2,443,498	-		DDA3937_RS10845	0.10	-1.2
2,443,914	+		DDA3937_RS10845	0.24	+1.0
2,443,915	-		DDA3937_RS10845	0.24	-0.3
2,444,029	+		DDA3937_RS10845	0.28	-0.4
2,444,029	+		DDA3937_RS10845	0.28	+0.6
2,444,029	+		DDA3937_RS10845	0.28	+0.1
2,444,029	+				-0.7
2,444,029	+		DDA3937_RS10845	0.28	-1.4
2,444,029	+		DDA3937_RS10845	0.28	-1.8
2,444,029	+		DDA3937_RS10845	0.28	-2.2
2,444,030	-		DDA3937_RS10845	0.28	-2.4
2,444,030	-		DDA3937_RS10845	0.28	-1.0
2,444,030	-		DDA3937_RS10845	0.28	-0.2
2,444,030	-		DDA3937_RS10845	0.28	-1.5
2,444,030	-		DDA3937_RS10845	0.28	-1.0
2,444,030	-		DDA3937_RS10845	0.28	-1.1
2,444,030	-		DDA3937_RS10845	0.28	-0.2
2,444,030	-		DDA3937_RS10845	0.28	-0.9
2,444,036	+		DDA3937_RS10845	0.28	-0.7
2,444,036	+		DDA3937_RS10845	0.28	-2.8
2,444,037	-		DDA3937_RS10845	0.28	+0.0
2,444,065	+		DDA3937_RS10845	0.29	-1.3
2,444,065	+		DDA3937_RS10845	0.29	-1.0
2,444,066	-		DDA3937_RS10845	0.29	-0.2
2,444,066	-		DDA3937_RS10845	0.29	-1.0
2,444,071	+		DDA3937_RS10845	0.29	+0.7
2,444,071	+		DDA3937_RS10845	0.29	-1.6
2,444,213	+		DDA3937_RS10845	0.34	-2.7
2,444,213	+		DDA3937_RS10845	0.34	-2.0
2,444,213	+		DDA3937_RS10845	0.34	-0.7
2,444,284	+		DDA3937_RS10845	0.36	-0.7
2,444,284	+		DDA3937_RS10845	0.36	+0.2
2,444,284	+		DDA3937_RS10845	0.36	-2.2
2,444,284	+		DDA3937_RS10845	0.36	-2.3
2,444,284	+		DDA3937_RS10845	0.36	-0.9
2,444,284	+		DDA3937_RS10845	0.36	-2.3
2,444,284	+		DDA3937_RS10845	0.36	+0.9
2,444,285	-		DDA3937_RS10845	0.36	-1.4
2,444,285	-		DDA3937_RS10845	0.36	+1.3
2,444,437	+		DDA3937_RS10845	0.42	-0.4
2,444,438	-		DDA3937_RS10845	0.42	-0.5
2,444,555	+		DDA3937_RS10845	0.45	-0.4
2,444,565	+		DDA3937_RS10845	0.46	+0.0
2,444,566	-		DDA3937_RS10845	0.46	-0.7
2,444,566	-		DDA3937_RS10845	0.46	-1.7
2,444,773	+		DDA3937_RS10845	0.53	-0.4
2,444,773	+		DDA3937_RS10845	0.53	-2.1
2,444,773	+		DDA3937_RS10845	0.53	+2.0
2,444,773	+		DDA3937_RS10845	0.53	-1.1
2,444,773	+		DDA3937_RS10845	0.53	+0.9
2,444,773	+		DDA3937_RS10845	0.53	+0.2
2,444,774	-		DDA3937_RS10845	0.53	-0.7
2,444,774	-		DDA3937_RS10845	0.53	-0.6
2,444,779	+		DDA3937_RS10845	0.53	-1.4
2,444,779	+		DDA3937_RS10845	0.53	+0.2
2,444,779	+		DDA3937_RS10845	0.53	+0.3
2,444,779	+		DDA3937_RS10845	0.53	-1.6
2,444,779	+		DDA3937_RS10845	0.53	+1.1
2,444,898	+		DDA3937_RS10845	0.57	-0.7
2,444,941	+		DDA3937_RS10845	0.58	-0.8
2,444,942	-		DDA3937_RS10845	0.58	-2.1
2,445,052	+		DDA3937_RS10845	0.62	-1.1
2,445,052	+		DDA3937_RS10845	0.62	-0.3
2,445,052	+		DDA3937_RS10845	0.62	-2.4
2,445,052	+		DDA3937_RS10845	0.62	-0.1
2,445,052	+		DDA3937_RS10845	0.62	+3.5
2,445,052	+		DDA3937_RS10845	0.62	-0.1
2,445,052	+		DDA3937_RS10845	0.62	-2.3
2,445,052	+				+1.9
2,445,052	+		DDA3937_RS10845	0.62	-0.1
2,445,052	+		DDA3937_RS10845	0.62	+1.2
2,445,052	+		DDA3937_RS10845	0.62	-0.9
2,445,053	-		DDA3937_RS10845	0.62	-2.1
2,445,053	-		DDA3937_RS10845	0.62	-0.8
2,445,053	-		DDA3937_RS10845	0.62	-1.7
2,445,053	-		DDA3937_RS10845	0.62	-0.5
2,445,053	-		DDA3937_RS10845	0.62	-2.3
2,445,053	-		DDA3937_RS10845	0.62	-0.2
2,445,223	+		DDA3937_RS10845	0.68	-0.5
2,445,223	+		DDA3937_RS10845	0.68	-1.9
2,445,223	+		DDA3937_RS10845	0.68	-1.7
2,445,224	-		DDA3937_RS10845	0.68	-0.7
2,445,224	-		DDA3937_RS10845	0.68	-1.6
2,445,224	-		DDA3937_RS10845	0.68	-1.4
2,445,316	+				-1.7
2,445,316	+		DDA3937_RS10845	0.71	-1.8
2,445,481	+		DDA3937_RS10845	0.76	-2.4
2,445,482	-		DDA3937_RS10845	0.76	-0.3
2,445,482	-		DDA3937_RS10845	0.76	+0.1
2,445,482	-		DDA3937_RS10845	0.76	-1.1
2,445,715	+		DDA3937_RS10845	0.84	+1.0
2,445,715	+		DDA3937_RS10845	0.84	-1.1
2,445,715	+		DDA3937_RS10845	0.84	+0.9
2,445,757	+		DDA3937_RS10845	0.86	-0.4
2,445,758	-		DDA3937_RS10845	0.86	-0.8
2,445,758	-		DDA3937_RS10845	0.86	-2.0
2,445,765	+		DDA3937_RS10845	0.86	-1.7
2,445,765	+		DDA3937_RS10845	0.86	-0.2
2,445,765	+		DDA3937_RS10845	0.86	-1.7
2,445,766	-		DDA3937_RS10845	0.86	-3.1
2,445,766	-		DDA3937_RS10845	0.86	+0.5
2,445,805	+		DDA3937_RS10845	0.87	-0.7
2,445,805	+		DDA3937_RS10845	0.87	+0.4
2,445,805	+		DDA3937_RS10845	0.87	-0.0
2,445,808	+		DDA3937_RS10845	0.87	-1.4
2,445,808	+		DDA3937_RS10845	0.87	-0.4
2,445,808	+		DDA3937_RS10845	0.87	-0.6
2,445,809	-		DDA3937_RS10845	0.87	-1.7
2,445,809	-		DDA3937_RS10845	0.87	-0.4
2,445,809	-		DDA3937_RS10845	0.87	+0.0
2,445,809	-		DDA3937_RS10845	0.87	-0.3
2,445,810	+		DDA3937_RS10845	0.87	-1.2
2,445,870	-		DDA3937_RS10845	0.89	+0.2
2,445,934	+				+0.6
2,445,935	-				-0.1
2,445,989	+				-0.8
2,445,990	-				-0.5
2,445,990	-				-0.4
2,445,990	-				-2.7
2,446,067	+				-0.6
2,446,067	+				-0.1
2,446,068	-				-0.7
2,446,068	-				-1.6
2,446,150	+				-0.3
2,446,150	+				-1.3
2,446,151	-				-1.1
2,446,231	+				+2.2
2,446,231	+				-1.0
2,446,232	-				-0.5
2,446,232	-				-2.9
2,446,232	-				+2.7
2,446,232	-				-2.4
2,446,431	+				-0.1
2,446,431	+				+1.5
2,446,431	+				+0.5
2,446,607	-		DDA3937_RS10850	0.17	+0.2
2,446,631	+		DDA3937_RS10850	0.18	+2.3
2,446,631	+		DDA3937_RS10850	0.18	+0.1
2,446,631	+		DDA3937_RS10850	0.18	-0.5
2,446,631	+		DDA3937_RS10850	0.18	+0.9
2,446,634	+		DDA3937_RS10850	0.18	-1.8
2,446,635	-		DDA3937_RS10850	0.18	-2.0
2,446,641	+		DDA3937_RS10850	0.18	-1.8
2,446,641	+		DDA3937_RS10850	0.18	+0.9
2,446,651	+		DDA3937_RS10850	0.19	+0.5
2,446,788	+		DDA3937_RS10850	0.24	+0.3
2,446,789	-		DDA3937_RS10850	0.24	-1.0
2,446,789	-		DDA3937_RS10850	0.24	-2.9
2,446,926	+		DDA3937_RS10850	0.30	-3.2
2,446,926	+		DDA3937_RS10850	0.30	+0.0
2,446,926	+		DDA3937_RS10850	0.30	-0.9
2,446,926	+		DDA3937_RS10850	0.30	-1.8
2,446,927	-		DDA3937_RS10850	0.30	-1.6
2,446,927	-		DDA3937_RS10850	0.30	+1.1
2,446,927	-		DDA3937_RS10850	0.30	-2.1
2,446,987	+		DDA3937_RS10850	0.32	-1.1
2,446,987	+		DDA3937_RS10850	0.32	-1.0
2,446,987	+		DDA3937_RS10850	0.32	-1.3
2,446,988	-		DDA3937_RS10850	0.32	+0.2
2,447,039	+		DDA3937_RS10850	0.34	+0.3
2,447,040	-		DDA3937_RS10850	0.34	-0.5
2,447,040	-		DDA3937_RS10850	0.34	-1.0
2,447,072	+		DDA3937_RS10850	0.36	-0.5
2,447,072	+		DDA3937_RS10850	0.36	-1.7