Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08765

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,977,647	+		DDA3937_RS08755	0.79	-1.4
1,977,647	+		DDA3937_RS08755	0.79	-1.6
1,977,647	+		DDA3937_RS08755	0.79	-1.3
1,977,650	+		DDA3937_RS08755	0.80	+0.3
1,977,650	+		DDA3937_RS08755	0.80	+1.5
1,977,650	+		DDA3937_RS08755	0.80	+0.5
1,977,650	+		DDA3937_RS08755	0.80	-0.2
1,977,650	+		DDA3937_RS08755	0.80	+0.0
1,977,651	-		DDA3937_RS08755	0.80	-0.7
1,977,651	-		DDA3937_RS08755	0.80	-0.9
1,977,651	-		DDA3937_RS08755	0.80	-0.2
1,977,651	-		DDA3937_RS08755	0.80	-2.5
1,977,651	-		DDA3937_RS08755	0.80	-0.9
1,977,651	-		DDA3937_RS08755	0.80	+0.6
1,977,701	+		DDA3937_RS08755	0.82	-0.7
1,977,701	+		DDA3937_RS08755	0.82	-0.5
1,977,702	-		DDA3937_RS08755	0.82	-2.5
1,977,702	-		DDA3937_RS08755	0.82	-0.1
1,977,702	-		DDA3937_RS08755	0.82	-0.9
1,977,714	-		DDA3937_RS08755	0.82	-0.5
1,977,714	-		DDA3937_RS08755	0.82	-0.8
1,977,764	+		DDA3937_RS08755	0.85	-0.7
1,977,765	-		DDA3937_RS08755	0.85	-0.4
1,977,880	-		DDA3937_RS08755	0.90	-0.6
1,977,890	+				-0.4
1,977,891	-				-0.4
1,978,019	+				-1.5
1,978,019	+				-0.9
1,978,020	-				-0.9
1,978,108	+				-1.4
1,978,108	+				-0.3
1,978,108	+				-0.1
1,978,109	-				-0.8
1,978,109	-				-0.6
1,978,109	-				-2.7
1,978,119	-				-0.6
1,978,119	-				+0.3
1,978,119	-				-0.6
1,978,119	-				-0.2
1,978,119	-				-0.3
1,978,122	+				+0.9
1,978,122	+				-2.7
1,978,122	+				-0.3
1,978,122	+				-0.9
1,978,123	-				+0.6
1,978,126	-				-0.4
1,978,126	-				+1.2
1,978,138	+				+0.1
1,978,139	-				-0.0
1,978,139	-				-1.7
1,978,139	-				-0.3
1,978,221	+				+1.0
1,978,258	+				+1.5
1,978,258	+				-2.1
1,978,258	+				-2.4
1,978,258	+				-1.4
1,978,258	+				-1.9
1,978,258	+				-0.4
1,978,259	-				+2.9
1,978,259	-				-1.2
1,978,259	-				-0.1
1,978,259	-				+0.3
1,978,259	-				-0.2
1,978,259	-				-0.4
1,978,259	-				-2.7
1,978,259	-				-0.2
1,978,260	+				+0.7
1,978,261	-				+1.1
1,978,261	-				-1.7
1,978,261	-				+5.1
1,978,261	-				-2.4
1,978,337	-				+2.4
1,978,360	-				+0.8
1,978,360	-				-1.3
1,978,381	+				-0.4
1,978,381	+				-2.4
1,978,382	-				+0.6
1,978,398	+				-0.5
1,978,398	+				+1.8
1,978,398	+				+0.3
1,978,399	-				+1.5
1,978,399	-				+1.1
1,978,412	+				-0.2
1,978,414	+				-0.8
1,978,414	+				-1.0
1,978,414	+				-0.1
1,978,414	+				+0.5
1,978,414	+				-0.1
1,978,415	-				+0.1
1,978,415	-				-1.1
1,978,415	-				+0.2
1,978,415	-				+0.2
1,978,415	-				-1.7
1,978,433	+				-0.5
1,978,434	-				-1.7
1,978,434	-				+0.9
1,978,527	+				+0.4
1,978,527	+				+1.7
1,978,527	+				-1.7
1,978,527	+				+0.7
1,978,528	-				-0.5
1,978,528	-				+0.5
1,978,528	-				-1.4
1,978,528	-				+0.2
1,978,540	+				-2.7
1,978,576	+				+0.8
1,978,650	-				-0.4
1,978,651	+				+0.4
1,978,652	-				+1.0
1,978,682	-				+0.2
1,978,742	+				-0.3
1,978,742	+				+1.6
1,978,742	+				-0.5
1,978,743	-				+0.6
1,978,744	+				-0.5
1,978,744	+				-0.7
1,978,744	+				-2.1
1,978,744	+				-1.7
1,978,745	-				-0.9
1,978,745	-				-1.9
1,978,745	-				-1.5
1,978,796	+				+0.5
1,978,796	+				-0.1
1,978,958	+		DDA3937_RS08765	0.17	-0.1
1,978,958	+		DDA3937_RS08765	0.17	-1.4
1,978,958	+		DDA3937_RS08765	0.17	-0.1
1,978,958	+		DDA3937_RS08765	0.17	+1.1
1,979,026	+		DDA3937_RS08765	0.20	+0.2
1,979,026	+		DDA3937_RS08765	0.20	+0.4
1,979,026	+				+1.9
1,979,027	-		DDA3937_RS08765	0.20	+1.1
1,979,099	+		DDA3937_RS08765	0.23	-0.4
1,979,099	+		DDA3937_RS08765	0.23	+2.2
1,979,100	-		DDA3937_RS08765	0.23	-1.7
1,979,100	-		DDA3937_RS08765	0.23	+0.3
1,979,165	-		DDA3937_RS08765	0.26	-1.4
1,979,165	-		DDA3937_RS08765	0.26	+1.8
1,979,204	+		DDA3937_RS08765	0.28	-1.7
1,979,204	+				-1.4
1,979,204	+		DDA3937_RS08765	0.28	+1.6
1,979,205	-		DDA3937_RS08765	0.28	-0.7
1,979,205	-		DDA3937_RS08765	0.28	+0.1
1,979,205	-		DDA3937_RS08765	0.28	+0.2
1,979,205	-		DDA3937_RS08765	0.28	-0.3
1,979,207	+		DDA3937_RS08765	0.28	-0.9
1,979,665	+		DDA3937_RS08765	0.50	-0.1
1,979,751	+		DDA3937_RS08765	0.54	+0.4
1,979,751	+		DDA3937_RS08765	0.54	-0.9
1,979,752	-		DDA3937_RS08765	0.54	-0.2
1,979,752	-		DDA3937_RS08765	0.54	-0.7
1,979,752	-		DDA3937_RS08765	0.54	-1.4
1,979,752	-				-1.4
1,979,811	+		DDA3937_RS08765	0.57	-1.1
1,979,812	-		DDA3937_RS08765	0.57	-1.8
1,979,812	-		DDA3937_RS08765	0.57	+0.6
1,979,812	-		DDA3937_RS08765	0.57	+0.8
1,979,884	+		DDA3937_RS08765	0.61	+0.2
1,979,900	+		DDA3937_RS08765	0.61	+0.1
1,980,119	-		DDA3937_RS08765	0.72	-0.6
1,980,119	-		DDA3937_RS08765	0.72	+0.0
1,980,148	-		DDA3937_RS08765	0.73	+0.7
1,980,584	-				-0.1
1,980,614	+				-1.0
1,980,614	+				-1.1
1,980,614	+				+0.1
1,980,615	-				-0.4
1,980,710	+				-1.1
1,980,721	+				-0.5
1,980,765	+				+0.2
1,980,766	-				-0.3
1,980,766	-				-1.3
1,980,766	-				+1.2
1,980,837	+				-1.1
1,980,837	+				-0.3
1,980,837	+				-0.9
1,980,837	+				+0.2
1,980,838	-				-1.5
1,980,838	-				-0.5
1,980,838	-				+0.6
1,980,838	-				+0.2
1,980,974	+				-0.4
1,980,975	-				-0.1
1,980,980	+				-0.2
1,981,037	-				-1.1
1,981,044	-		DDA3937_RS08770	0.14	-0.5
1,981,167	+		DDA3937_RS08770	0.24	+0.5
1,981,167	+		DDA3937_RS08770	0.24	-2.4
1,981,168	-		DDA3937_RS08770	0.25	+1.3
1,981,168	-		DDA3937_RS08770	0.25	-0.6
1,981,208	+		DDA3937_RS08770	0.28	-1.6
1,981,208	+		DDA3937_RS08770	0.28	-0.9
1,981,209	-		DDA3937_RS08770	0.28	-0.7
1,981,209	-		DDA3937_RS08770	0.28	-2.5
1,981,260	+		DDA3937_RS08770	0.32	-0.7
1,981,274	+				+0.6
1,981,274	+		DDA3937_RS08770	0.34	-1.1
1,981,274	+		DDA3937_RS08770	0.34	+2.5
1,981,274	+		DDA3937_RS08770	0.34	-0.9
1,981,274	+		DDA3937_RS08770	0.34	-0.3
1,981,275	-		DDA3937_RS08770	0.34	+0.5
1,981,275	-		DDA3937_RS08770	0.34	+2.1
1,981,278	+		DDA3937_RS08770	0.34	-1.1
1,981,278	+		DDA3937_RS08770	0.34	-0.5
1,981,278	+		DDA3937_RS08770	0.34	+1.1
1,981,278	+				+1.2
1,981,279	-		DDA3937_RS08770	0.34	-1.7
1,981,336	-		DDA3937_RS08770	0.39	-1.2
1,981,336	-		DDA3937_RS08770	0.39	-0.0
1,981,383	+		DDA3937_RS08770	0.43	+0.3
1,981,383	+		DDA3937_RS08770	0.43	+0.3
1,981,383	+		DDA3937_RS08770	0.43	+0.9
1,981,389	+		DDA3937_RS08770	0.43	-0.1
1,981,397	-		DDA3937_RS08770	0.44	+0.5
1,981,412	+		DDA3937_RS08770	0.45	-0.3
1,981,412	+		DDA3937_RS08770	0.45	+1.0
1,981,459	+		DDA3937_RS08770	0.49	-0.5
1,981,459	+		DDA3937_RS08770	0.49	-2.0
1,981,459	+		DDA3937_RS08770	0.49	+0.3
1,981,460	-		DDA3937_RS08770	0.50	-1.2
1,981,460	-		DDA3937_RS08770	0.50	+0.1
1,981,460	-		DDA3937_RS08770	0.50	-0.7
1,981,467	+		DDA3937_RS08770	0.50	-0.1
1,981,467	+		DDA3937_RS08770	0.50	-0.2
1,981,494	+		DDA3937_RS08770	0.52	-0.3
1,981,494	+		DDA3937_RS08770	0.52	+0.2
1,981,494	+		DDA3937_RS08770	0.52	-0.9
1,981,494	+				-1.4
1,981,494	+		DDA3937_RS08770	0.52	+0.4
1,981,494	+		DDA3937_RS08770	0.52	-0.9
1,981,495	-		DDA3937_RS08770	0.53	+0.2
1,981,495	-		DDA3937_RS08770	0.53	-1.5
1,981,495	-		DDA3937_RS08770	0.53	+0.6
1,981,495	-		DDA3937_RS08770	0.53	+0.8
1,981,495	-		DDA3937_RS08770	0.53	+2.2
1,981,496	+		DDA3937_RS08770	0.53	-2.7
1,981,497	-		DDA3937_RS08770	0.53	-0.7
1,981,568	+		DDA3937_RS08770	0.59	-1.5
1,981,569	-		DDA3937_RS08770	0.59	-0.5
1,981,569	-		DDA3937_RS08770	0.59	+0.6
1,981,569	-		DDA3937_RS08770	0.59	+0.9