Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08480

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,914,577	+		DDA3937_RS08475	0.37	-0.5
1,914,578	-		DDA3937_RS08475	0.37	-0.1
1,914,703	+		DDA3937_RS08475	0.47	-2.9
1,914,704	-		DDA3937_RS08475	0.47	-2.5
1,914,874	-		DDA3937_RS08475	0.61	+0.1
1,915,259	-				+0.5
1,915,335	+				-0.8
1,915,335	+				+0.2
1,915,335	+				-0.1
1,915,335	+				-0.8
1,915,335	+				-1.2
1,915,336	-				+2.0
1,915,346	+				-1.2
1,915,346	+				-0.6
1,915,346	+				-1.6
1,915,346	+				-1.7
1,915,347	-				-0.3
1,915,347	-				-0.9
1,915,347	-				-0.6
1,915,402	+				-0.5
1,915,402	+				-0.1
1,915,402	+				-2.0
1,915,402	+				+0.6
1,915,403	-				+0.1
1,915,403	-				+0.5
1,915,403	-				-0.5
1,915,406	+				-2.4
1,915,406	+				-1.5
1,915,407	-				+0.2
1,915,407	-				+1.0
1,915,407	-				-0.2
1,915,417	+				-0.6
1,915,417	+				-0.7
1,915,433	-				-0.3
1,915,433	-				+0.4
1,915,436	+				-0.9
1,915,436	+				+0.3
1,915,437	-				+0.8
1,915,437	-				-0.4
1,915,437	-				-0.3
1,915,437	-				+0.7
1,915,438	+				+0.4
1,915,438	+				-0.6
1,915,438	+				-0.5
1,915,438	+				+0.5
1,915,438	+				-1.9
1,915,438	+				-0.8
1,915,438	+				+2.0
1,915,438	+				-1.7
1,915,438	+				+0.1
1,915,438	+				+0.2
1,915,439	-				-0.1
1,915,439	-				-1.0
1,915,439	-				+1.7
1,915,439	-				-0.5
1,915,439	-				-0.4
1,915,439	-				+0.0
1,915,439	-				+0.7
1,915,439	-				-0.8
1,915,439	-				-0.3
1,915,449	+				-1.7
1,915,449	+				+0.3
1,915,449	+				-1.4
1,915,532	+				-0.6
1,915,550	+				+0.1
1,915,582	+				-2.0
1,915,582	+				-0.9
1,915,582	+				-2.6
1,915,582	+				+0.7
1,915,582	+				-1.5
1,915,583	-				-3.4
1,915,583	-				-0.5
1,915,583	-				-3.6
1,915,590	+				-1.4
1,915,590	+				+1.0
1,915,590	+				-2.7
1,915,590	+				-2.0
1,915,590	+				-0.0
1,915,600	-				-0.9
1,915,635	-				-1.0
1,915,635	-				-1.6
1,915,847	+		DDA3937_RS08480	0.16	-1.4
1,915,875	+		DDA3937_RS08480	0.18	-1.0
1,915,922	+		DDA3937_RS08480	0.21	+1.6
1,916,137	+				-0.6
1,916,598	+		DDA3937_RS08480	0.60	-0.4
1,916,598	+		DDA3937_RS08480	0.60	-2.5
1,916,598	+		DDA3937_RS08480	0.60	-1.7
1,916,598	+		DDA3937_RS08480	0.60	-0.3
1,916,599	-		DDA3937_RS08480	0.61	-2.0
1,916,599	-		DDA3937_RS08480	0.61	-2.1
1,916,641	-		DDA3937_RS08480	0.63	-3.0
1,916,641	-		DDA3937_RS08480	0.63	-0.7
1,916,641	-		DDA3937_RS08480	0.63	-2.0
1,916,641	-		DDA3937_RS08480	0.63	-0.4
1,916,733	+				-0.6
1,916,733	+		DDA3937_RS08480	0.68	-1.0
1,916,734	-		DDA3937_RS08480	0.68	-2.5
1,916,746	+		DDA3937_RS08480	0.69	-2.1
1,916,792	+		DDA3937_RS08480	0.72	-1.0
1,916,792	+		DDA3937_RS08480	0.72	-0.3
1,916,792	+		DDA3937_RS08480	0.72	-1.9
1,916,797	+		DDA3937_RS08480	0.72	-0.9
1,916,797	+		DDA3937_RS08480	0.72	-1.9
1,916,797	+		DDA3937_RS08480	0.72	-1.9
1,916,797	+		DDA3937_RS08480	0.72	+1.0
1,916,797	+		DDA3937_RS08480	0.72	-4.3
1,916,798	-		DDA3937_RS08480	0.72	-1.0
1,916,798	-		DDA3937_RS08480	0.72	-1.9
1,916,866	+		DDA3937_RS08480	0.76	-1.0
1,916,890	+		DDA3937_RS08480	0.78	-0.0
1,916,891	-				+1.0
1,916,891	-		DDA3937_RS08480	0.78	-2.1
1,916,913	+		DDA3937_RS08480	0.79	-0.9
1,916,914	-		DDA3937_RS08480	0.79	-0.6
1,916,914	-				-0.6
1,916,932	-		DDA3937_RS08480	0.80	-0.3
1,916,958	+		DDA3937_RS08480	0.82	-1.4
1,917,003	+		DDA3937_RS08480	0.84	-1.6
1,917,035	-		DDA3937_RS08480	0.86	-1.0
1,917,043	-		DDA3937_RS08480	0.87	-0.6
1,917,043	-		DDA3937_RS08480	0.87	-1.0
1,917,078	+		DDA3937_RS08480	0.89	-1.2
1,917,233	-				-3.0
1,917,234	+				-0.0
1,917,234	+				-2.4
1,917,234	+				-2.7
1,917,235	-				-3.2
1,917,235	-				-2.6
1,917,235	-				+0.4
1,917,248	-				-2.6
1,917,322	-				-1.4
1,917,338	+				-0.4
1,917,338	+				+8.6
1,917,338	+				+1.4
1,917,339	-				+0.1
1,917,339	-				+1.5
1,917,343	+				-2.2
1,917,354	+				+1.0
1,917,355	-				-0.5
1,917,358	+				-1.3
1,917,358	+				-2.4
1,917,380	-				-0.9
1,917,383	+				+1.0
1,917,383	+				-0.0
1,917,383	+				-0.1
1,917,383	+				-2.4
1,917,383	+				+0.1
1,917,383	+				-0.5
1,917,383	+				+1.3
1,917,384	-				+0.5
1,917,384	-				-0.0
1,917,399	-				-1.1
1,917,407	+				-2.4
1,917,425	+				-0.6
1,917,426	-				-0.4
1,917,426	-				-1.1
1,917,472	+				+0.4
1,917,472	+				-1.8
1,917,473	-				+0.4
1,917,524	-				-0.8
1,917,580	-				+0.6
1,917,895	-		DDA3937_RS08485	0.39	+0.1
1,917,960	-		DDA3937_RS08485	0.46	-0.4
1,917,999	+		DDA3937_RS08485	0.51	-2.9
1,918,000	-		DDA3937_RS08485	0.51	-1.4
1,918,000	-		DDA3937_RS08485	0.51	-1.6
1,918,000	-		DDA3937_RS08485	0.51	-0.5
1,918,061	+		DDA3937_RS08485	0.58	+0.4
1,918,061	+		DDA3937_RS08485	0.58	-0.2
1,918,061	+		DDA3937_RS08485	0.58	-0.1
1,918,061	+		DDA3937_RS08485	0.58	+0.5
1,918,061	+		DDA3937_RS08485	0.58	-1.2
1,918,062	-		DDA3937_RS08485	0.58	-0.9
1,918,062	-		DDA3937_RS08485	0.58	+1.0
1,918,062	-		DDA3937_RS08485	0.58	+0.1
1,918,171	-		DDA3937_RS08485	0.70	-1.4
1,918,184	+		DDA3937_RS08485	0.71	-1.0
1,918,184	+		DDA3937_RS08485	0.71	+0.4
1,918,184	+		DDA3937_RS08485	0.71	-1.0
1,918,185	-		DDA3937_RS08485	0.72	+0.8
1,918,211	-		DDA3937_RS08485	0.74	-2.2
1,918,211	-		DDA3937_RS08485	0.74	+0.7