Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06605

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06600 and DDA3937_RS06605 overlap by 11 nucleotidesDDA3937_RS06605 and DDA3937_RS06610 overlap by 4 nucleotides DDA3937_RS06600: DDA3937_RS06600 - galactose-1-epimerase, at 1,473,882 to 1,474,964 _RS06600 DDA3937_RS06605: DDA3937_RS06605 - galactokinase, at 1,474,954 to 1,476,105 _RS06605 DDA3937_RS06610: DDA3937_RS06610 - galactose-1-phosphate uridylyltransferase, at 1,476,102 to 1,477,154 _RS06610 Position (kb) 1474 1475 1476 1477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1474.045 kb on + strand, within DDA3937_RS06600at 1474.093 kb on + strand, within DDA3937_RS06600at 1474.093 kb on + strand, within DDA3937_RS06600at 1474.093 kb on + strand, within DDA3937_RS06600at 1474.118 kb on + strand, within DDA3937_RS06600at 1474.118 kb on + strand, within DDA3937_RS06600at 1474.118 kb on + strand, within DDA3937_RS06600at 1474.119 kb on - strand, within DDA3937_RS06600at 1474.119 kb on - strand, within DDA3937_RS06600at 1474.119 kb on - strand, within DDA3937_RS06600at 1474.120 kb on + strand, within DDA3937_RS06600at 1474.121 kb on - strand, within DDA3937_RS06600at 1474.121 kb on - strand, within DDA3937_RS06600at 1474.121 kb on - strand, within DDA3937_RS06600at 1474.317 kb on - strand, within DDA3937_RS06600at 1474.317 kb on - strand, within DDA3937_RS06600at 1474.317 kb on - strand, within DDA3937_RS06600at 1474.317 kb on - strand, within DDA3937_RS06600at 1474.328 kb on + strand, within DDA3937_RS06600at 1474.328 kb on + strand, within DDA3937_RS06600at 1474.328 kb on + strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strandat 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.351 kb on + strand, within DDA3937_RS06600at 1474.352 kb on - strand, within DDA3937_RS06600at 1474.352 kb on - strand, within DDA3937_RS06600at 1474.352 kb on - strand, within DDA3937_RS06600at 1474.354 kb on + strand, within DDA3937_RS06600at 1474.355 kb on - strand, within DDA3937_RS06600at 1474.365 kb on + strand, within DDA3937_RS06600at 1474.365 kb on + strand, within DDA3937_RS06600at 1474.366 kb on - strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.418 kb on - strand, within DDA3937_RS06600at 1474.455 kb on + strand, within DDA3937_RS06600at 1474.455 kb on + strand, within DDA3937_RS06600at 1474.469 kb on - strand, within DDA3937_RS06600at 1474.469 kb on - strandat 1474.469 kb on - strand, within DDA3937_RS06600at 1474.567 kb on + strand, within DDA3937_RS06600at 1474.568 kb on - strand, within DDA3937_RS06600at 1474.744 kb on + strand, within DDA3937_RS06600at 1474.745 kb on - strand, within DDA3937_RS06600at 1474.788 kb on + strand, within DDA3937_RS06600at 1474.789 kb on - strand, within DDA3937_RS06600at 1474.789 kb on - strand, within DDA3937_RS06600at 1474.964 kb on + strandat 1474.994 kb on + strandat 1474.994 kb on + strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1475.008 kb on + strandat 1475.089 kb on - strand, within DDA3937_RS06605at 1475.166 kb on + strand, within DDA3937_RS06605at 1475.184 kb on + strand, within DDA3937_RS06605at 1475.438 kb on + strand, within DDA3937_RS06605at 1475.438 kb on + strand, within DDA3937_RS06605at 1475.439 kb on - strand, within DDA3937_RS06605at 1475.439 kb on - strand, within DDA3937_RS06605at 1475.439 kb on - strand, within DDA3937_RS06605at 1475.665 kb on + strand, within DDA3937_RS06605at 1475.673 kb on - strand, within DDA3937_RS06605at 1475.818 kb on + strand, within DDA3937_RS06605at 1475.818 kb on + strand, within DDA3937_RS06605at 1475.818 kb on + strand, within DDA3937_RS06605at 1475.819 kb on - strand, within DDA3937_RS06605at 1475.819 kb on - strand, within DDA3937_RS06605at 1475.822 kb on + strand, within DDA3937_RS06605at 1475.823 kb on - strand, within DDA3937_RS06605at 1475.823 kb on - strand, within DDA3937_RS06605at 1475.823 kb on - strand, within DDA3937_RS06605at 1475.894 kb on + strand, within DDA3937_RS06605at 1475.894 kb on + strand, within DDA3937_RS06605at 1475.895 kb on - strand, within DDA3937_RS06605at 1475.957 kb on + strand, within DDA3937_RS06605at 1475.958 kb on - strand, within DDA3937_RS06605at 1475.958 kb on - strand, within DDA3937_RS06605at 1475.994 kb on - strandat 1475.994 kb on - strandat 1476.037 kb on + strandat 1476.038 kb on - strandat 1476.038 kb on - strandat 1476.097 kb on + strandat 1476.098 kb on - strandat 1476.098 kb on - strandat 1476.134 kb on + strandat 1476.257 kb on - strand, within DDA3937_RS06610at 1476.358 kb on + strand, within DDA3937_RS06610at 1476.416 kb on + strand, within DDA3937_RS06610at 1476.481 kb on + strand, within DDA3937_RS06610at 1476.553 kb on + strand, within DDA3937_RS06610at 1476.553 kb on + strand, within DDA3937_RS06610at 1476.553 kb on + strand, within DDA3937_RS06610at 1476.553 kb on + strand, within DDA3937_RS06610at 1476.553 kb on + strand, within DDA3937_RS06610at 1476.554 kb on - strand, within DDA3937_RS06610at 1476.577 kb on + strand, within DDA3937_RS06610at 1476.578 kb on - strand, within DDA3937_RS06610at 1476.578 kb on - strand, within DDA3937_RS06610at 1476.590 kb on - strand, within DDA3937_RS06610at 1476.765 kb on + strand, within DDA3937_RS06610at 1476.766 kb on - strand, within DDA3937_RS06610

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,474,045 + DDA3937_RS06600 0.15 -0.0
1,474,093 + DDA3937_RS06600 0.19 -0.0
1,474,093 + DDA3937_RS06600 0.19 +1.1
1,474,093 + DDA3937_RS06600 0.19 -0.1
1,474,118 + DDA3937_RS06600 0.22 +0.1
1,474,118 + DDA3937_RS06600 0.22 -0.6
1,474,118 + DDA3937_RS06600 0.22 -0.2
1,474,119 - DDA3937_RS06600 0.22 -0.3
1,474,119 - DDA3937_RS06600 0.22 -0.5
1,474,119 - DDA3937_RS06600 0.22 +0.1
1,474,120 + DDA3937_RS06600 0.22 +0.4
1,474,121 - DDA3937_RS06600 0.22 -0.5
1,474,121 - DDA3937_RS06600 0.22 -0.3
1,474,121 - DDA3937_RS06600 0.22 -0.9
1,474,317 - DDA3937_RS06600 0.40 +2.0
1,474,317 - DDA3937_RS06600 0.40 -0.3
1,474,317 - DDA3937_RS06600 0.40 +0.3
1,474,317 - DDA3937_RS06600 0.40 -0.5
1,474,328 + DDA3937_RS06600 0.41 -0.6
1,474,328 + DDA3937_RS06600 0.41 +0.3
1,474,328 + DDA3937_RS06600 0.41 -0.9
1,474,329 - DDA3937_RS06600 0.41 -0.1
1,474,329 - +1.1
1,474,329 - DDA3937_RS06600 0.41 -1.7
1,474,329 - DDA3937_RS06600 0.41 -0.9
1,474,329 - DDA3937_RS06600 0.41 +0.7
1,474,329 - DDA3937_RS06600 0.41 -0.9
1,474,329 - DDA3937_RS06600 0.41 +0.2
1,474,351 + DDA3937_RS06600 0.43 +0.6
1,474,352 - DDA3937_RS06600 0.43 +0.1
1,474,352 - DDA3937_RS06600 0.43 +0.1
1,474,352 - DDA3937_RS06600 0.43 -1.9
1,474,354 + DDA3937_RS06600 0.44 -0.6
1,474,355 - DDA3937_RS06600 0.44 -1.1
1,474,365 + DDA3937_RS06600 0.45 +0.9
1,474,365 + DDA3937_RS06600 0.45 -2.1
1,474,366 - DDA3937_RS06600 0.45 -1.0
1,474,417 + DDA3937_RS06600 0.49 -0.0
1,474,417 + DDA3937_RS06600 0.49 -0.7
1,474,417 + DDA3937_RS06600 0.49 -0.1
1,474,417 + DDA3937_RS06600 0.49 -0.8
1,474,417 + DDA3937_RS06600 0.49 -0.5
1,474,417 + DDA3937_RS06600 0.49 -0.8
1,474,418 - DDA3937_RS06600 0.49 -1.4
1,474,455 + DDA3937_RS06600 0.53 -0.5
1,474,455 + DDA3937_RS06600 0.53 +0.3
1,474,469 - DDA3937_RS06600 0.54 +0.2
1,474,469 - -0.5
1,474,469 - DDA3937_RS06600 0.54 -0.9
1,474,567 + DDA3937_RS06600 0.63 -0.1
1,474,568 - DDA3937_RS06600 0.63 -1.2
1,474,744 + DDA3937_RS06600 0.80 +0.6
1,474,745 - DDA3937_RS06600 0.80 -2.6
1,474,788 + DDA3937_RS06600 0.84 -0.3
1,474,789 - DDA3937_RS06600 0.84 +1.0
1,474,789 - DDA3937_RS06600 0.84 +0.5
1,474,964 + -1.7
1,474,994 + -0.8
1,474,994 + -2.6
1,474,995 - -0.6
1,474,995 - -0.2
1,474,995 - -1.4
1,474,995 - -1.5
1,474,995 - -0.5
1,474,995 - +0.7
1,475,008 + -0.9
1,475,089 - DDA3937_RS06605 0.12 -0.6
1,475,166 + DDA3937_RS06605 0.18 -1.8
1,475,184 + DDA3937_RS06605 0.20 -2.4
1,475,438 + DDA3937_RS06605 0.42 -1.7
1,475,438 + DDA3937_RS06605 0.42 -2.3
1,475,439 - DDA3937_RS06605 0.42 -0.1
1,475,439 - DDA3937_RS06605 0.42 +0.1
1,475,439 - DDA3937_RS06605 0.42 +1.0
1,475,665 + DDA3937_RS06605 0.62 -1.2
1,475,673 - DDA3937_RS06605 0.62 -0.9
1,475,818 + DDA3937_RS06605 0.75 -1.1
1,475,818 + DDA3937_RS06605 0.75 -0.9
1,475,818 + DDA3937_RS06605 0.75 +3.3
1,475,819 - DDA3937_RS06605 0.75 -0.4
1,475,819 - DDA3937_RS06605 0.75 -0.2
1,475,822 + DDA3937_RS06605 0.75 -1.5
1,475,823 - DDA3937_RS06605 0.75 -2.7
1,475,823 - DDA3937_RS06605 0.75 -3.7
1,475,823 - DDA3937_RS06605 0.75 -0.9
1,475,894 + DDA3937_RS06605 0.82 -1.4
1,475,894 + DDA3937_RS06605 0.82 -0.8
1,475,895 - DDA3937_RS06605 0.82 -2.1
1,475,957 + DDA3937_RS06605 0.87 -1.9
1,475,958 - DDA3937_RS06605 0.87 -1.1
1,475,958 - DDA3937_RS06605 0.87 -0.9
1,475,994 - -0.5
1,475,994 - -1.2
1,476,037 + -1.2
1,476,038 - -0.0
1,476,038 - -1.2
1,476,097 + -1.5
1,476,098 - -0.3
1,476,098 - -0.5
1,476,134 + -2.6
1,476,257 - DDA3937_RS06610 0.15 -1.2
1,476,358 + DDA3937_RS06610 0.24 -0.4
1,476,416 + DDA3937_RS06610 0.30 -0.5
1,476,481 + DDA3937_RS06610 0.36 -1.7
1,476,553 + DDA3937_RS06610 0.43 -1.8
1,476,553 + DDA3937_RS06610 0.43 -1.4
1,476,553 + DDA3937_RS06610 0.43 -1.6
1,476,553 + DDA3937_RS06610 0.43 -3.1
1,476,553 + DDA3937_RS06610 0.43 -0.7
1,476,554 - DDA3937_RS06610 0.43 -2.4
1,476,577 + DDA3937_RS06610 0.45 -1.2
1,476,578 - DDA3937_RS06610 0.45 -2.2
1,476,578 - DDA3937_RS06610 0.45 -1.7
1,476,590 - DDA3937_RS06610 0.46 -1.9
1,476,765 + DDA3937_RS06610 0.63 -3.2
1,476,766 - DDA3937_RS06610 0.63 -1.3

Or see this region's nucleotide sequence