Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06000

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,350,598	+		DDA3937_RS05995	0.12	+0.8
1,350,599	-		DDA3937_RS05995	0.12	-0.9
1,350,599	-		DDA3937_RS05995	0.12	+1.2
1,350,648	+		DDA3937_RS05995	0.18	-0.6
1,350,648	+		DDA3937_RS05995	0.18	-0.8
1,350,649	-		DDA3937_RS05995	0.18	+0.9
1,350,824	-		DDA3937_RS05995	0.40	-1.0
1,350,855	+		DDA3937_RS05995	0.44	+1.0
1,350,938	-		DDA3937_RS05995	0.54	+0.5
1,350,966	+		DDA3937_RS05995	0.57	-0.4
1,350,966	+		DDA3937_RS05995	0.57	+0.6
1,350,966	+				+0.2
1,350,967	-		DDA3937_RS05995	0.57	+1.9
1,350,967	-		DDA3937_RS05995	0.57	-2.3
1,350,967	-		DDA3937_RS05995	0.57	-0.9
1,350,967	-		DDA3937_RS05995	0.57	+1.1
1,350,967	-		DDA3937_RS05995	0.57	-0.4
1,350,967	-		DDA3937_RS05995	0.57	+0.5
1,351,152	-		DDA3937_RS05995	0.80	+0.1
1,351,173	+		DDA3937_RS05995	0.82	-1.6
1,351,174	-		DDA3937_RS05995	0.82	+1.2
1,351,174	-		DDA3937_RS05995	0.82	-0.1
1,351,177	+		DDA3937_RS05995	0.83	+2.2
1,351,177	+		DDA3937_RS05995	0.83	-0.3
1,351,330	-				-0.0
1,351,336	+				-0.9
1,351,402	+				+0.4
1,351,403	-				+1.4
1,351,403	-				-1.1
1,351,403	-				+1.3
1,351,407	+				+0.0
1,351,407	+				-1.0
1,351,407	+				+0.3
1,351,408	-				-1.1
1,351,408	-				-0.6
1,351,408	-				+0.0
1,351,409	+				+1.3
1,351,409	+				-0.8
1,351,410	-				+0.1
1,351,410	-				-1.2
1,351,410	-				-1.6
1,351,410	-				+0.7
1,351,433	+				-2.1
1,351,433	+				-2.8
1,351,434	-				-2.6
1,351,434	-				-0.8
1,351,468	-				-0.5
1,351,468	-				+0.9
1,351,493	-				+1.2
1,351,503	+				-0.8
1,351,503	+				-1.9
1,351,510	+				+0.0
1,351,513	-				+1.0
1,351,555	+				+0.6
1,351,555	+				-1.1
1,351,556	-				+1.8
1,351,556	-				-0.0
1,351,582	+				-0.4
1,351,583	-				-0.2
1,351,583	-				-0.8
1,351,636	+				+0.8
1,351,636	+				-0.7
1,351,636	+				-1.0
1,351,637	-				+0.5
1,351,637	-				-0.2
1,351,637	-				-0.7
1,351,637	-				-1.7
1,351,637	-				-0.7
1,351,637	-				+0.6
1,351,663	+				+1.0
1,351,663	+				-0.2
1,351,663	+				-0.4
1,351,663	+				+0.9
1,351,663	+				-0.4
1,351,664	-				-0.2
1,351,664	-				+3.3
1,351,664	-				-0.1
1,351,664	-				-1.6
1,351,675	+		DDA3937_RS06000	0.11	-1.4
1,351,675	+		DDA3937_RS06000	0.11	-0.5
1,351,675	+		DDA3937_RS06000	0.11	-1.1
1,351,675	+		DDA3937_RS06000	0.11	-0.2
1,351,676	-		DDA3937_RS06000	0.11	+1.4
1,351,676	-		DDA3937_RS06000	0.11	+0.3
1,351,676	-		DDA3937_RS06000	0.11	-0.1
1,351,676	-		DDA3937_RS06000	0.11	+0.3
1,351,676	-				+0.9
1,351,676	-		DDA3937_RS06000	0.11	-0.5
1,351,689	-		DDA3937_RS06000	0.12	-0.2
1,351,697	+		DDA3937_RS06000	0.13	-0.7
1,351,725	-		DDA3937_RS06000	0.16	+0.0
1,351,786	+		DDA3937_RS06000	0.22	-1.7
1,351,786	+		DDA3937_RS06000	0.22	-1.4
1,351,786	+		DDA3937_RS06000	0.22	-0.3
1,351,787	-		DDA3937_RS06000	0.22	+0.2
1,351,787	-		DDA3937_RS06000	0.22	+0.7
1,351,787	-		DDA3937_RS06000	0.22	-0.3
1,351,798	-		DDA3937_RS06000	0.23	+0.5
1,351,852	+		DDA3937_RS06000	0.28	-1.3
1,351,853	-		DDA3937_RS06000	0.28	+0.3
1,351,853	-		DDA3937_RS06000	0.28	+0.3
1,351,873	+		DDA3937_RS06000	0.30	+0.1
1,351,873	+				-0.8
1,351,873	+		DDA3937_RS06000	0.30	-0.9
1,351,873	+		DDA3937_RS06000	0.30	+0.2
1,351,873	+		DDA3937_RS06000	0.30	+0.5
1,351,873	+		DDA3937_RS06000	0.30	+1.7
1,351,873	+		DDA3937_RS06000	0.30	-1.0
1,351,874	-		DDA3937_RS06000	0.30	+0.4
1,351,950	-		DDA3937_RS06000	0.38	+1.0
1,352,011	+		DDA3937_RS06000	0.44	+1.2
1,352,011	+		DDA3937_RS06000	0.44	+0.6
1,352,011	+		DDA3937_RS06000	0.44	+1.2
1,352,011	+		DDA3937_RS06000	0.44	-0.9
1,352,011	+		DDA3937_RS06000	0.44	-1.3
1,352,011	+		DDA3937_RS06000	0.44	+2.5
1,352,012	-		DDA3937_RS06000	0.44	-1.1
1,352,012	-		DDA3937_RS06000	0.44	+0.2
1,352,012	-		DDA3937_RS06000	0.44	-1.0
1,352,012	-		DDA3937_RS06000	0.44	-2.3
1,352,012	-		DDA3937_RS06000	0.44	-1.0
1,352,012	-		DDA3937_RS06000	0.44	+0.2
1,352,012	-				-1.1
1,352,012	-		DDA3937_RS06000	0.44	+0.7
1,352,021	+		DDA3937_RS06000	0.45	+0.4
1,352,021	+		DDA3937_RS06000	0.45	+0.6
1,352,021	+		DDA3937_RS06000	0.45	-0.4
1,352,022	-		DDA3937_RS06000	0.45	+0.4
1,352,023	+		DDA3937_RS06000	0.45	-0.9
1,352,023	+		DDA3937_RS06000	0.45	-0.6
1,352,023	+		DDA3937_RS06000	0.45	-0.4
1,352,023	+		DDA3937_RS06000	0.45	+0.0
1,352,023	+		DDA3937_RS06000	0.45	-0.5
1,352,024	-		DDA3937_RS06000	0.45	+0.4
1,352,024	-		DDA3937_RS06000	0.45	-0.2
1,352,024	-		DDA3937_RS06000	0.45	-1.0
1,352,024	-		DDA3937_RS06000	0.45	-0.8
1,352,024	-		DDA3937_RS06000	0.45	+0.2
1,352,051	+		DDA3937_RS06000	0.48	-0.8
1,352,119	+		DDA3937_RS06000	0.55	-1.4
1,352,119	+		DDA3937_RS06000	0.55	+0.9
1,352,120	-		DDA3937_RS06000	0.55	-0.3
1,352,120	-		DDA3937_RS06000	0.55	-1.3
1,352,120	-		DDA3937_RS06000	0.55	-0.1
1,352,122	+		DDA3937_RS06000	0.55	-1.3
1,352,123	-		DDA3937_RS06000	0.55	-0.5
1,352,123	-		DDA3937_RS06000	0.55	-0.5
1,352,141	-		DDA3937_RS06000	0.57	+0.8
1,352,157	-		DDA3937_RS06000	0.58	+0.4
1,352,160	+		DDA3937_RS06000	0.59	+1.0
1,352,160	+		DDA3937_RS06000	0.59	-0.9
1,352,160	+		DDA3937_RS06000	0.59	+1.6
1,352,160	+		DDA3937_RS06000	0.59	+0.1
1,352,160	+		DDA3937_RS06000	0.59	-0.0
1,352,160	+		DDA3937_RS06000	0.59	+0.3
1,352,160	+		DDA3937_RS06000	0.59	-2.0
1,352,160	+		DDA3937_RS06000	0.59	-0.2
1,352,161	-		DDA3937_RS06000	0.59	-0.6
1,352,161	-		DDA3937_RS06000	0.59	+0.7
1,352,161	-		DDA3937_RS06000	0.59	+0.2
1,352,253	+		DDA3937_RS06000	0.68	+0.2
1,352,253	+		DDA3937_RS06000	0.68	-0.8
1,352,253	+		DDA3937_RS06000	0.68	+0.4
1,352,253	+		DDA3937_RS06000	0.68	-0.2
1,352,254	-		DDA3937_RS06000	0.68	-0.3
1,352,447	+		DDA3937_RS06000	0.87	-0.5
1,352,447	+		DDA3937_RS06000	0.87	-1.0
1,352,447	+		DDA3937_RS06000	0.87	-1.7
1,352,447	+		DDA3937_RS06000	0.87	+1.2
1,352,448	-		DDA3937_RS06000	0.87	+1.1
1,352,487	-				+0.0
1,352,489	+				-2.3
1,352,489	+				+0.7
1,352,489	+				+0.2
1,352,489	+				-0.1
1,352,489	+				-0.1
1,352,489	+				-1.1
1,352,490	-				+1.7
1,352,490	-				+0.9
1,352,490	-				-0.0
1,352,490	-				-0.4
1,352,506	-				+0.6
1,352,521	+				-0.6
1,352,567	+				-0.6
1,352,567	+				+1.5
1,352,567	+				-1.6
1,352,567	+				+0.2
1,352,568	-				-0.3
1,352,597	+				+0.5
1,352,605	+				-0.7
1,352,606	-				+0.6
1,352,614	+				+1.2
1,352,677	-				-0.7
1,352,677	-				-0.6
1,352,772	+		DDA3937_RS06005	0.12	+1.0
1,352,773	-		DDA3937_RS06005	0.12	-0.1
1,352,780	+		DDA3937_RS06005	0.12	-0.4
1,352,781	-		DDA3937_RS06005	0.12	+0.6
1,352,887	-		DDA3937_RS06005	0.19	+0.2
1,353,009	-		DDA3937_RS06005	0.27	+1.7
1,353,053	+		DDA3937_RS06005	0.30	+0.2
1,353,053	+		DDA3937_RS06005	0.30	+0.8
1,353,053	+		DDA3937_RS06005	0.30	+0.2
1,353,059	+		DDA3937_RS06005	0.30	+0.0
1,353,059	+				+0.2
1,353,059	+		DDA3937_RS06005	0.30	+0.4
1,353,059	+		DDA3937_RS06005	0.30	+0.5
1,353,060	-		DDA3937_RS06005	0.31	-0.1
1,353,060	-		DDA3937_RS06005	0.31	+0.4
1,353,060	-		DDA3937_RS06005	0.31	+0.6
1,353,060	-		DDA3937_RS06005	0.31	-0.6
1,353,060	-		DDA3937_RS06005	0.31	-0.4
1,353,060	-		DDA3937_RS06005	0.31	-0.7
1,353,060	-		DDA3937_RS06005	0.31	+1.5
1,353,060	-		DDA3937_RS06005	0.31	-0.8
1,353,060	-		DDA3937_RS06005	0.31	+1.9
1,353,060	-		DDA3937_RS06005	0.31	+1.0
1,353,064	-		DDA3937_RS06005	0.31	-1.9
1,353,127	-		DDA3937_RS06005	0.35	+0.3
1,353,163	-		DDA3937_RS06005	0.37	+1.7
1,353,454	+		DDA3937_RS06005	0.56	-0.3
1,353,454	+		DDA3937_RS06005	0.56	+0.9
1,353,455	-		DDA3937_RS06005	0.56	-1.6
1,353,455	-		DDA3937_RS06005	0.56	-0.1
1,353,506	+		DDA3937_RS06005	0.60	-0.6
1,353,506	+		DDA3937_RS06005	0.60	-0.8
1,353,506	+		DDA3937_RS06005	0.60	-0.2
1,353,506	+		DDA3937_RS06005	0.60	+1.2
1,353,507	-		DDA3937_RS06005	0.60	-0.1
1,353,507	-		DDA3937_RS06005	0.60	-0.5
1,353,507	-		DDA3937_RS06005	0.60	-1.0
1,353,507	-		DDA3937_RS06005	0.60	-0.1
1,353,507	-		DDA3937_RS06005	0.60	-1.3