Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05030

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05020 and DDA3937_RS05025 are separated by 22 nucleotidesDDA3937_RS05025 and DDA3937_RS05030 are separated by 218 nucleotidesDDA3937_RS05030 and DDA3937_RS05035 overlap by 13 nucleotidesDDA3937_RS05035 and DDA3937_RS05040 are separated by 3 nucleotides DDA3937_RS05020: DDA3937_RS05020 - D-2-hydroxyacid dehydrogenase family protein, at 1,123,865 to 1,124,878 _RS05020 DDA3937_RS05025: DDA3937_RS05025 - GNAT family N-acetyltransferase, at 1,124,901 to 1,125,347 _RS05025 DDA3937_RS05030: DDA3937_RS05030 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 1,125,566 to 1,126,399 _RS05030 DDA3937_RS05035: DDA3937_RS05035 - cysteine desulfurase sulfur acceptor subunit CsdE, at 1,126,387 to 1,126,830 _RS05035 DDA3937_RS05040: DDA3937_RS05040 - cysteine desulfurase CsdA, at 1,126,834 to 1,128,039 _RS05040 Position (kb) 1125 1126 1127Strain fitness (log2 ratio) -2 -1 0 1 2at 1124.690 kb on + strand, within DDA3937_RS05020at 1124.691 kb on - strand, within DDA3937_RS05020at 1124.691 kb on - strand, within DDA3937_RS05020at 1124.701 kb on + strand, within DDA3937_RS05020at 1124.701 kb on + strand, within DDA3937_RS05020at 1124.702 kb on - strand, within DDA3937_RS05020at 1124.702 kb on - strand, within DDA3937_RS05020at 1124.702 kb on - strand, within DDA3937_RS05020at 1124.778 kb on + strandat 1124.778 kb on + strandat 1124.779 kb on - strandat 1124.779 kb on - strandat 1124.779 kb on - strandat 1124.779 kb on - strandat 1124.779 kb on - strandat 1124.799 kb on - strandat 1124.853 kb on + strandat 1124.854 kb on - strandat 1124.854 kb on - strandat 1124.854 kb on - strandat 1124.861 kb on + strandat 1124.861 kb on + strandat 1124.861 kb on + strandat 1124.861 kb on + strandat 1124.861 kb on + strandat 1124.861 kb on + strandat 1124.861 kb on + strandat 1124.862 kb on - strandat 1124.862 kb on - strandat 1124.862 kb on - strandat 1124.862 kb on - strandat 1124.862 kb on - strandat 1124.862 kb on - strandat 1124.862 kb on - strandat 1124.862 kb on - strandat 1124.864 kb on + strandat 1124.865 kb on - strandat 1124.865 kb on - strandat 1124.865 kb on - strandat 1124.903 kb on - strandat 1124.903 kb on - strandat 1124.977 kb on + strand, within DDA3937_RS05025at 1124.978 kb on - strand, within DDA3937_RS05025at 1125.121 kb on + strand, within DDA3937_RS05025at 1125.121 kb on + strand, within DDA3937_RS05025at 1125.122 kb on - strand, within DDA3937_RS05025at 1125.122 kb on - strand, within DDA3937_RS05025at 1125.151 kb on + strand, within DDA3937_RS05025at 1125.152 kb on - strand, within DDA3937_RS05025at 1125.192 kb on - strand, within DDA3937_RS05025at 1125.268 kb on + strand, within DDA3937_RS05025at 1125.268 kb on + strandat 1125.269 kb on - strand, within DDA3937_RS05025at 1125.269 kb on - strand, within DDA3937_RS05025at 1125.282 kb on + strand, within DDA3937_RS05025at 1125.283 kb on - strand, within DDA3937_RS05025at 1125.372 kb on + strandat 1125.373 kb on - strandat 1125.373 kb on - strandat 1125.375 kb on + strandat 1125.376 kb on - strandat 1125.376 kb on - strandat 1125.390 kb on - strandat 1125.432 kb on + strandat 1125.433 kb on - strandat 1125.436 kb on + strandat 1125.436 kb on + strandat 1125.451 kb on - strandat 1125.467 kb on + strandat 1125.467 kb on + strandat 1125.467 kb on + strandat 1125.467 kb on + strandat 1125.467 kb on + strandat 1125.468 kb on - strandat 1125.468 kb on - strandat 1125.468 kb on - strandat 1125.468 kb on - strandat 1125.468 kb on - strandat 1125.468 kb on - strandat 1125.468 kb on - strandat 1125.528 kb on + strandat 1125.571 kb on + strandat 1125.623 kb on + strandat 1125.736 kb on + strand, within DDA3937_RS05030at 1125.772 kb on + strand, within DDA3937_RS05030at 1125.773 kb on - strand, within DDA3937_RS05030at 1125.901 kb on + strand, within DDA3937_RS05030at 1125.901 kb on + strand, within DDA3937_RS05030at 1125.902 kb on - strand, within DDA3937_RS05030at 1126.082 kb on - strand, within DDA3937_RS05030at 1126.082 kb on - strand, within DDA3937_RS05030at 1126.132 kb on + strand, within DDA3937_RS05030at 1126.132 kb on + strand, within DDA3937_RS05030at 1126.132 kb on + strand, within DDA3937_RS05030at 1126.142 kb on - strand, within DDA3937_RS05030at 1126.200 kb on - strand, within DDA3937_RS05030at 1126.200 kb on - strand, within DDA3937_RS05030at 1126.200 kb on - strand, within DDA3937_RS05030at 1126.235 kb on - strand, within DDA3937_RS05030at 1126.251 kb on + strand, within DDA3937_RS05030at 1126.258 kb on + strand, within DDA3937_RS05030at 1126.258 kb on + strand, within DDA3937_RS05030at 1126.258 kb on + strand, within DDA3937_RS05030at 1126.259 kb on - strand, within DDA3937_RS05030at 1126.259 kb on - strand, within DDA3937_RS05030at 1126.490 kb on - strand, within DDA3937_RS05035at 1126.537 kb on + strand, within DDA3937_RS05035at 1126.537 kb on + strandat 1126.538 kb on - strand, within DDA3937_RS05035at 1126.719 kb on + strand, within DDA3937_RS05035at 1126.720 kb on - strand, within DDA3937_RS05035at 1126.847 kb on - strandat 1126.904 kb on + strandat 1126.904 kb on + strandat 1126.904 kb on + strandat 1126.905 kb on - strandat 1126.905 kb on - strandat 1127.139 kb on + strand, within DDA3937_RS05040at 1127.139 kb on + strand, within DDA3937_RS05040at 1127.140 kb on - strand, within DDA3937_RS05040at 1127.140 kb on - strand, within DDA3937_RS05040at 1127.355 kb on + strand, within DDA3937_RS05040at 1127.369 kb on + strand, within DDA3937_RS05040at 1127.369 kb on + strand, within DDA3937_RS05040at 1127.370 kb on - strand, within DDA3937_RS05040at 1127.370 kb on - strand, within DDA3937_RS05040at 1127.393 kb on + strand, within DDA3937_RS05040at 1127.393 kb on + strand, within DDA3937_RS05040at 1127.393 kb on + strand, within DDA3937_RS05040at 1127.393 kb on + strand, within DDA3937_RS05040

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,124,690 + DDA3937_RS05020 0.81 +0.3
1,124,691 - DDA3937_RS05020 0.81 +0.6
1,124,691 - DDA3937_RS05020 0.81 -0.5
1,124,701 + DDA3937_RS05020 0.82 +0.9
1,124,701 + DDA3937_RS05020 0.82 -0.3
1,124,702 - DDA3937_RS05020 0.83 -1.4
1,124,702 - DDA3937_RS05020 0.83 -1.3
1,124,702 - DDA3937_RS05020 0.83 +0.2
1,124,778 + -0.2
1,124,778 + -0.4
1,124,779 - -1.4
1,124,779 - +0.1
1,124,779 - -0.6
1,124,779 - -0.1
1,124,779 - -1.9
1,124,799 - -0.3
1,124,853 + -0.0
1,124,854 - -0.3
1,124,854 - +1.5
1,124,854 - -0.3
1,124,861 + -1.8
1,124,861 + +0.5
1,124,861 + -0.8
1,124,861 + -1.4
1,124,861 + -0.9
1,124,861 + -0.1
1,124,861 + -0.6
1,124,862 - +0.7
1,124,862 - -1.9
1,124,862 - +0.2
1,124,862 - -1.4
1,124,862 - -1.8
1,124,862 - -1.3
1,124,862 - -0.2
1,124,862 - -0.8
1,124,864 + -0.6
1,124,865 - -0.5
1,124,865 - +1.1
1,124,865 - -0.8
1,124,903 - +1.0
1,124,903 - -0.2
1,124,977 + DDA3937_RS05025 0.17 -1.2
1,124,978 - DDA3937_RS05025 0.17 +1.0
1,125,121 + DDA3937_RS05025 0.49 -0.6
1,125,121 + DDA3937_RS05025 0.49 -0.4
1,125,122 - DDA3937_RS05025 0.49 -0.0
1,125,122 - DDA3937_RS05025 0.49 -0.5
1,125,151 + DDA3937_RS05025 0.56 -0.2
1,125,152 - DDA3937_RS05025 0.56 -0.1
1,125,192 - DDA3937_RS05025 0.65 -2.1
1,125,268 + DDA3937_RS05025 0.82 -0.0
1,125,268 + -1.6
1,125,269 - DDA3937_RS05025 0.82 +1.4
1,125,269 - DDA3937_RS05025 0.82 +0.2
1,125,282 + DDA3937_RS05025 0.85 -0.9
1,125,283 - DDA3937_RS05025 0.85 +1.8
1,125,372 + +1.6
1,125,373 - -0.4
1,125,373 - -0.2
1,125,375 + -0.7
1,125,376 - +0.9
1,125,376 - -0.7
1,125,390 - -1.6
1,125,432 + -2.6
1,125,433 - -0.9
1,125,436 + -0.2
1,125,436 + -1.6
1,125,451 - -0.1
1,125,467 + -0.6
1,125,467 + -1.4
1,125,467 + -1.9
1,125,467 + -0.4
1,125,467 + -0.8
1,125,468 - -0.2
1,125,468 - -0.2
1,125,468 - -0.8
1,125,468 - -0.6
1,125,468 - -0.2
1,125,468 - +1.9
1,125,468 - -2.5
1,125,528 + -0.1
1,125,571 + -1.2
1,125,623 + +0.3
1,125,736 + DDA3937_RS05030 0.20 -0.4
1,125,772 + DDA3937_RS05030 0.25 -1.9
1,125,773 - DDA3937_RS05030 0.25 -1.8
1,125,901 + DDA3937_RS05030 0.40 +0.6
1,125,901 + DDA3937_RS05030 0.40 -0.1
1,125,902 - DDA3937_RS05030 0.40 -1.8
1,126,082 - DDA3937_RS05030 0.62 +1.0
1,126,082 - DDA3937_RS05030 0.62 +0.7
1,126,132 + DDA3937_RS05030 0.68 +0.5
1,126,132 + DDA3937_RS05030 0.68 -1.6
1,126,132 + DDA3937_RS05030 0.68 +0.4
1,126,142 - DDA3937_RS05030 0.69 -1.6
1,126,200 - DDA3937_RS05030 0.76 +0.5
1,126,200 - DDA3937_RS05030 0.76 -0.9
1,126,200 - DDA3937_RS05030 0.76 -0.3
1,126,235 - DDA3937_RS05030 0.80 +1.6
1,126,251 + DDA3937_RS05030 0.82 -0.4
1,126,258 + DDA3937_RS05030 0.83 +0.8
1,126,258 + DDA3937_RS05030 0.83 +1.0
1,126,258 + DDA3937_RS05030 0.83 -0.0
1,126,259 - DDA3937_RS05030 0.83 +1.6
1,126,259 - DDA3937_RS05030 0.83 -0.4
1,126,490 - DDA3937_RS05035 0.23 -0.3
1,126,537 + DDA3937_RS05035 0.34 -1.5
1,126,537 + +0.6
1,126,538 - DDA3937_RS05035 0.34 -0.8
1,126,719 + DDA3937_RS05035 0.75 -0.6
1,126,720 - DDA3937_RS05035 0.75 -0.5
1,126,847 - +0.5
1,126,904 + -2.4
1,126,904 + -0.3
1,126,904 + +0.2
1,126,905 - -0.5
1,126,905 - +1.4
1,127,139 + DDA3937_RS05040 0.25 +1.4
1,127,139 + DDA3937_RS05040 0.25 -1.4
1,127,140 - DDA3937_RS05040 0.25 -0.4
1,127,140 - DDA3937_RS05040 0.25 -1.8
1,127,355 + DDA3937_RS05040 0.43 -0.1
1,127,369 + DDA3937_RS05040 0.44 +0.1
1,127,369 + DDA3937_RS05040 0.44 -1.6
1,127,370 - DDA3937_RS05040 0.44 -1.2
1,127,370 - DDA3937_RS05040 0.44 -0.3
1,127,393 + DDA3937_RS05040 0.46 -0.8
1,127,393 + DDA3937_RS05040 0.46 -1.6
1,127,393 + DDA3937_RS05040 0.46 -1.1
1,127,393 + DDA3937_RS05040 0.46 -0.5

Or see this region's nucleotide sequence