Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03335

Experiment: Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS03330 and DDA3937_RS03335 are separated by 10 nucleotidesDDA3937_RS03335 and DDA3937_RS03340 are separated by 150 nucleotides DDA3937_RS03330: DDA3937_RS03330 - GMC family oxidoreductase, at 728,009 to 729,604 _RS03330 DDA3937_RS03335: DDA3937_RS03335 - hypothetical protein, at 729,615 to 730,079 _RS03335 DDA3937_RS03340: DDA3937_RS03340 - phosphoesterase, at 730,230 to 731,657 _RS03340 Position (kb) 729 730 731Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 728.652 kb on + strand, within DDA3937_RS03330at 728.652 kb on + strand, within DDA3937_RS03330at 728.652 kb on + strand, within DDA3937_RS03330at 728.652 kb on + strand, within DDA3937_RS03330at 728.653 kb on - strand, within DDA3937_RS03330at 728.653 kb on - strand, within DDA3937_RS03330at 728.653 kb on - strand, within DDA3937_RS03330at 728.663 kb on - strand, within DDA3937_RS03330at 728.663 kb on - strand, within DDA3937_RS03330at 728.815 kb on + strand, within DDA3937_RS03330at 728.890 kb on + strand, within DDA3937_RS03330at 728.924 kb on - strand, within DDA3937_RS03330at 728.970 kb on + strand, within DDA3937_RS03330at 728.971 kb on - strand, within DDA3937_RS03330at 729.052 kb on + strand, within DDA3937_RS03330at 729.052 kb on + strand, within DDA3937_RS03330at 729.052 kb on + strand, within DDA3937_RS03330at 729.052 kb on + strand, within DDA3937_RS03330at 729.052 kb on + strand, within DDA3937_RS03330at 729.052 kb on + strand, within DDA3937_RS03330at 729.053 kb on - strand, within DDA3937_RS03330at 729.053 kb on - strand, within DDA3937_RS03330at 729.053 kb on - strand, within DDA3937_RS03330at 729.053 kb on - strand, within DDA3937_RS03330at 729.053 kb on - strand, within DDA3937_RS03330at 729.053 kb on - strand, within DDA3937_RS03330at 729.147 kb on - strand, within DDA3937_RS03330at 729.183 kb on + strand, within DDA3937_RS03330at 729.183 kb on + strand, within DDA3937_RS03330at 729.183 kb on + strand, within DDA3937_RS03330at 729.184 kb on - strand, within DDA3937_RS03330at 729.184 kb on - strand, within DDA3937_RS03330at 729.184 kb on - strand, within DDA3937_RS03330at 729.184 kb on - strand, within DDA3937_RS03330at 729.202 kb on - strand, within DDA3937_RS03330at 729.204 kb on + strand, within DDA3937_RS03330at 729.204 kb on + strand, within DDA3937_RS03330at 729.204 kb on + strand, within DDA3937_RS03330at 729.204 kb on + strand, within DDA3937_RS03330at 729.205 kb on - strand, within DDA3937_RS03330at 729.205 kb on - strand, within DDA3937_RS03330at 729.205 kb on - strand, within DDA3937_RS03330at 729.205 kb on - strand, within DDA3937_RS03330at 729.205 kb on - strand, within DDA3937_RS03330at 729.205 kb on - strand, within DDA3937_RS03330at 729.223 kb on - strand, within DDA3937_RS03330at 729.284 kb on - strand, within DDA3937_RS03330at 729.327 kb on + strand, within DDA3937_RS03330at 729.327 kb on + strand, within DDA3937_RS03330at 729.327 kb on + strand, within DDA3937_RS03330at 729.328 kb on - strand, within DDA3937_RS03330at 729.328 kb on - strand, within DDA3937_RS03330at 729.420 kb on + strand, within DDA3937_RS03330at 729.421 kb on - strand, within DDA3937_RS03330at 729.421 kb on - strand, within DDA3937_RS03330at 729.421 kb on - strand, within DDA3937_RS03330at 729.421 kb on - strand, within DDA3937_RS03330at 729.433 kb on - strand, within DDA3937_RS03330at 729.456 kb on + strandat 729.457 kb on - strandat 729.474 kb on + strandat 729.474 kb on + strandat 729.474 kb on + strandat 729.475 kb on - strandat 729.475 kb on - strandat 729.475 kb on - strandat 729.534 kb on + strandat 729.534 kb on + strandat 729.584 kb on - strandat 729.584 kb on - strandat 729.587 kb on + strandat 729.588 kb on - strandat 729.593 kb on - strandat 729.593 kb on - strandat 729.668 kb on - strand, within DDA3937_RS03335at 729.676 kb on + strand, within DDA3937_RS03335at 729.677 kb on - strand, within DDA3937_RS03335at 729.717 kb on + strand, within DDA3937_RS03335at 729.717 kb on + strand, within DDA3937_RS03335at 729.759 kb on - strand, within DDA3937_RS03335at 729.820 kb on + strand, within DDA3937_RS03335at 729.820 kb on + strand, within DDA3937_RS03335at 729.821 kb on - strand, within DDA3937_RS03335at 729.821 kb on - strand, within DDA3937_RS03335at 729.881 kb on - strand, within DDA3937_RS03335at 729.881 kb on - strand, within DDA3937_RS03335at 729.883 kb on + strand, within DDA3937_RS03335at 729.883 kb on + strand, within DDA3937_RS03335at 729.884 kb on - strand, within DDA3937_RS03335at 729.892 kb on + strand, within DDA3937_RS03335at 729.892 kb on + strand, within DDA3937_RS03335at 729.893 kb on - strand, within DDA3937_RS03335at 729.906 kb on - strand, within DDA3937_RS03335at 729.908 kb on + strandat 729.909 kb on - strand, within DDA3937_RS03335at 729.931 kb on + strand, within DDA3937_RS03335at 729.932 kb on - strand, within DDA3937_RS03335at 729.932 kb on - strand, within DDA3937_RS03335at 729.932 kb on - strand, within DDA3937_RS03335at 729.946 kb on + strand, within DDA3937_RS03335at 729.947 kb on - strand, within DDA3937_RS03335at 730.019 kb on + strand, within DDA3937_RS03335at 730.019 kb on + strand, within DDA3937_RS03335at 730.019 kb on + strand, within DDA3937_RS03335at 730.020 kb on - strand, within DDA3937_RS03335at 730.020 kb on - strand, within DDA3937_RS03335at 730.020 kb on - strand, within DDA3937_RS03335at 730.020 kb on - strand, within DDA3937_RS03335at 730.026 kb on - strand, within DDA3937_RS03335at 730.049 kb on + strandat 730.054 kb on + strandat 730.055 kb on - strandat 730.055 kb on - strandat 730.055 kb on - strandat 730.055 kb on - strandat 730.055 kb on - strandat 730.055 kb on - strandat 730.079 kb on + strandat 730.079 kb on + strandat 730.079 kb on + strandat 730.079 kb on + strandat 730.079 kb on + strandat 730.079 kb on + strandat 730.079 kb on + strandat 730.079 kb on + strandat 730.079 kb on + strandat 730.079 kb on + strandat 730.080 kb on - strandat 730.080 kb on - strandat 730.080 kb on - strandat 730.080 kb on - strandat 730.080 kb on - strandat 730.080 kb on - strandat 730.193 kb on + strandat 730.193 kb on + strandat 730.193 kb on + strandat 730.193 kb on + strandat 730.193 kb on + strandat 730.194 kb on - strandat 730.194 kb on - strandat 730.270 kb on + strandat 730.271 kb on - strandat 730.271 kb on - strandat 730.271 kb on - strandat 730.271 kb on - strandat 730.476 kb on + strand, within DDA3937_RS03340at 730.476 kb on + strand, within DDA3937_RS03340at 730.476 kb on + strand, within DDA3937_RS03340at 730.476 kb on + strand, within DDA3937_RS03340at 730.476 kb on + strand, within DDA3937_RS03340at 730.477 kb on - strand, within DDA3937_RS03340at 730.477 kb on - strand, within DDA3937_RS03340at 730.477 kb on - strand, within DDA3937_RS03340at 730.599 kb on + strand, within DDA3937_RS03340at 730.676 kb on - strand, within DDA3937_RS03340at 730.753 kb on + strandat 730.753 kb on + strand, within DDA3937_RS03340at 730.753 kb on + strand, within DDA3937_RS03340at 730.753 kb on + strand, within DDA3937_RS03340at 730.754 kb on - strand, within DDA3937_RS03340at 730.754 kb on - strand, within DDA3937_RS03340at 730.757 kb on + strand, within DDA3937_RS03340at 730.757 kb on + strand, within DDA3937_RS03340at 730.758 kb on - strand, within DDA3937_RS03340at 730.804 kb on + strand, within DDA3937_RS03340at 730.804 kb on + strand, within DDA3937_RS03340at 730.804 kb on + strand, within DDA3937_RS03340at 730.805 kb on - strandat 730.805 kb on - strand, within DDA3937_RS03340at 730.805 kb on - strand, within DDA3937_RS03340at 730.807 kb on + strand, within DDA3937_RS03340at 730.807 kb on + strand, within DDA3937_RS03340at 730.807 kb on + strand, within DDA3937_RS03340at 730.807 kb on + strand, within DDA3937_RS03340at 730.900 kb on + strand, within DDA3937_RS03340at 730.901 kb on - strand, within DDA3937_RS03340at 730.901 kb on - strand, within DDA3937_RS03340at 730.901 kb on - strandat 730.901 kb on - strand, within DDA3937_RS03340at 730.901 kb on - strand, within DDA3937_RS03340at 730.901 kb on - strand, within DDA3937_RS03340at 730.962 kb on - strand, within DDA3937_RS03340at 730.962 kb on - strand, within DDA3937_RS03340at 730.962 kb on - strand, within DDA3937_RS03340at 731.018 kb on - strand, within DDA3937_RS03340at 731.018 kb on - strand, within DDA3937_RS03340at 731.018 kb on - strand, within DDA3937_RS03340at 731.023 kb on + strand, within DDA3937_RS03340at 731.023 kb on + strand, within DDA3937_RS03340at 731.023 kb on + strand, within DDA3937_RS03340at 731.024 kb on - strand, within DDA3937_RS03340at 731.024 kb on - strand, within DDA3937_RS03340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Norland
remove
728,652 + DDA3937_RS03330 0.40 +1.5
728,652 + DDA3937_RS03330 0.40 -1.5
728,652 + DDA3937_RS03330 0.40 +0.2
728,652 + DDA3937_RS03330 0.40 -1.7
728,653 - DDA3937_RS03330 0.40 +0.2
728,653 - DDA3937_RS03330 0.40 -0.2
728,653 - DDA3937_RS03330 0.40 -1.4
728,663 - DDA3937_RS03330 0.41 +1.3
728,663 - DDA3937_RS03330 0.41 +0.4
728,815 + DDA3937_RS03330 0.51 -0.9
728,890 + DDA3937_RS03330 0.55 -1.5
728,924 - DDA3937_RS03330 0.57 -1.1
728,970 + DDA3937_RS03330 0.60 -1.2
728,971 - DDA3937_RS03330 0.60 -1.8
729,052 + DDA3937_RS03330 0.65 -0.3
729,052 + DDA3937_RS03330 0.65 -0.0
729,052 + DDA3937_RS03330 0.65 -2.9
729,052 + DDA3937_RS03330 0.65 -1.2
729,052 + DDA3937_RS03330 0.65 +0.0
729,052 + DDA3937_RS03330 0.65 +0.4
729,053 - DDA3937_RS03330 0.65 -0.8
729,053 - DDA3937_RS03330 0.65 -2.6
729,053 - DDA3937_RS03330 0.65 +1.4
729,053 - DDA3937_RS03330 0.65 -2.1
729,053 - DDA3937_RS03330 0.65 -0.6
729,053 - DDA3937_RS03330 0.65 +0.5
729,147 - DDA3937_RS03330 0.71 -1.0
729,183 + DDA3937_RS03330 0.74 +0.9
729,183 + DDA3937_RS03330 0.74 +0.4
729,183 + DDA3937_RS03330 0.74 -1.4
729,184 - DDA3937_RS03330 0.74 -0.2
729,184 - DDA3937_RS03330 0.74 -1.4
729,184 - DDA3937_RS03330 0.74 +1.8
729,184 - DDA3937_RS03330 0.74 -0.2
729,202 - DDA3937_RS03330 0.75 -1.0
729,204 + DDA3937_RS03330 0.75 +0.6
729,204 + DDA3937_RS03330 0.75 +1.6
729,204 + DDA3937_RS03330 0.75 +0.5
729,204 + DDA3937_RS03330 0.75 +0.8
729,205 - DDA3937_RS03330 0.75 -1.4
729,205 - DDA3937_RS03330 0.75 +0.7
729,205 - DDA3937_RS03330 0.75 -1.2
729,205 - DDA3937_RS03330 0.75 -0.8
729,205 - DDA3937_RS03330 0.75 -0.1
729,205 - DDA3937_RS03330 0.75 -0.4
729,223 - DDA3937_RS03330 0.76 -0.5
729,284 - DDA3937_RS03330 0.80 -0.6
729,327 + DDA3937_RS03330 0.83 +0.1
729,327 + DDA3937_RS03330 0.83 +0.5
729,327 + DDA3937_RS03330 0.83 -0.2
729,328 - DDA3937_RS03330 0.83 -0.7
729,328 - DDA3937_RS03330 0.83 -0.1
729,420 + DDA3937_RS03330 0.88 -2.2
729,421 - DDA3937_RS03330 0.88 -0.4
729,421 - DDA3937_RS03330 0.88 -2.1
729,421 - DDA3937_RS03330 0.88 -0.8
729,421 - DDA3937_RS03330 0.88 -0.2
729,433 - DDA3937_RS03330 0.89 -0.8
729,456 + -1.2
729,457 - -0.6
729,474 + -0.1
729,474 + +1.1
729,474 + +0.3
729,475 - +0.5
729,475 - +0.4
729,475 - +2.4
729,534 + -0.1
729,534 + -0.8
729,584 - +2.1
729,584 - -0.2
729,587 + +1.8
729,588 - -1.2
729,593 - -0.6
729,593 - +1.6
729,668 - DDA3937_RS03335 0.11 -0.0
729,676 + DDA3937_RS03335 0.13 -1.1
729,677 - DDA3937_RS03335 0.13 +0.0
729,717 + DDA3937_RS03335 0.22 +0.2
729,717 + DDA3937_RS03335 0.22 +3.4
729,759 - DDA3937_RS03335 0.31 -1.5
729,820 + DDA3937_RS03335 0.44 +0.1
729,820 + DDA3937_RS03335 0.44 -1.5
729,821 - DDA3937_RS03335 0.44 -0.8
729,821 - DDA3937_RS03335 0.44 +0.5
729,881 - DDA3937_RS03335 0.57 -0.5
729,881 - DDA3937_RS03335 0.57 +0.4
729,883 + DDA3937_RS03335 0.58 -0.4
729,883 + DDA3937_RS03335 0.58 +1.0
729,884 - DDA3937_RS03335 0.58 -0.4
729,892 + DDA3937_RS03335 0.60 +0.6
729,892 + DDA3937_RS03335 0.60 -0.2
729,893 - DDA3937_RS03335 0.60 -1.5
729,906 - DDA3937_RS03335 0.63 -0.4
729,908 + -0.6
729,909 - DDA3937_RS03335 0.63 +1.9
729,931 + DDA3937_RS03335 0.68 -1.5
729,932 - DDA3937_RS03335 0.68 +3.6
729,932 - DDA3937_RS03335 0.68 +0.8
729,932 - DDA3937_RS03335 0.68 +0.1
729,946 + DDA3937_RS03335 0.71 -0.2
729,947 - DDA3937_RS03335 0.71 +0.2
730,019 + DDA3937_RS03335 0.87 -0.6
730,019 + DDA3937_RS03335 0.87 -0.3
730,019 + DDA3937_RS03335 0.87 +0.6
730,020 - DDA3937_RS03335 0.87 +0.1
730,020 - DDA3937_RS03335 0.87 -1.2
730,020 - DDA3937_RS03335 0.87 +4.0
730,020 - DDA3937_RS03335 0.87 -0.1
730,026 - DDA3937_RS03335 0.88 -1.5
730,049 + -1.5
730,054 + +0.0
730,055 - +0.9
730,055 - -2.0
730,055 - +0.2
730,055 - -0.6
730,055 - -0.5
730,055 - -1.5
730,079 + -1.6
730,079 + -1.1
730,079 + +1.2
730,079 + -0.9
730,079 + +0.6
730,079 + -0.8
730,079 + +0.4
730,079 + -1.1
730,079 + -1.2
730,079 + -0.1
730,080 - +0.2
730,080 - -1.6
730,080 - -1.2
730,080 - +0.6
730,080 - -1.2
730,080 - -1.5
730,193 + -1.7
730,193 + -1.2
730,193 + -1.6
730,193 + +0.2
730,193 + -1.1
730,194 - -1.6
730,194 - -0.1
730,270 + -1.1
730,271 - +0.2
730,271 - -1.1
730,271 - -1.5
730,271 - +0.7
730,476 + DDA3937_RS03340 0.17 +0.2
730,476 + DDA3937_RS03340 0.17 -0.9
730,476 + DDA3937_RS03340 0.17 -1.2
730,476 + DDA3937_RS03340 0.17 -0.4
730,476 + DDA3937_RS03340 0.17 -1.9
730,477 - DDA3937_RS03340 0.17 +0.6
730,477 - DDA3937_RS03340 0.17 -1.0
730,477 - DDA3937_RS03340 0.17 +0.9
730,599 + DDA3937_RS03340 0.26 -0.6
730,676 - DDA3937_RS03340 0.31 +0.4
730,753 + +1.4
730,753 + DDA3937_RS03340 0.37 +0.8
730,753 + DDA3937_RS03340 0.37 -0.6
730,753 + DDA3937_RS03340 0.37 -0.2
730,754 - DDA3937_RS03340 0.37 -0.4
730,754 - DDA3937_RS03340 0.37 +0.2
730,757 + DDA3937_RS03340 0.37 -1.1
730,757 + DDA3937_RS03340 0.37 -1.8
730,758 - DDA3937_RS03340 0.37 -2.0
730,804 + DDA3937_RS03340 0.40 +0.9
730,804 + DDA3937_RS03340 0.40 -1.1
730,804 + DDA3937_RS03340 0.40 +0.1
730,805 - +0.4
730,805 - DDA3937_RS03340 0.40 -1.2
730,805 - DDA3937_RS03340 0.40 +0.7
730,807 + DDA3937_RS03340 0.40 -1.5
730,807 + DDA3937_RS03340 0.40 +0.5
730,807 + DDA3937_RS03340 0.40 -0.6
730,807 + DDA3937_RS03340 0.40 +2.4
730,900 + DDA3937_RS03340 0.47 -1.0
730,901 - DDA3937_RS03340 0.47 +0.0
730,901 - DDA3937_RS03340 0.47 +0.8
730,901 - -0.2
730,901 - DDA3937_RS03340 0.47 +0.2
730,901 - DDA3937_RS03340 0.47 -0.2
730,901 - DDA3937_RS03340 0.47 -1.1
730,962 - DDA3937_RS03340 0.51 +0.5
730,962 - DDA3937_RS03340 0.51 +0.5
730,962 - DDA3937_RS03340 0.51 +0.1
731,018 - DDA3937_RS03340 0.55 -1.5
731,018 - DDA3937_RS03340 0.55 -0.6
731,018 - DDA3937_RS03340 0.55 -1.0
731,023 + DDA3937_RS03340 0.56 -0.5
731,023 + DDA3937_RS03340 0.56 -0.5
731,023 + DDA3937_RS03340 0.56 +2.1
731,024 - DDA3937_RS03340 0.56 -0.2
731,024 - DDA3937_RS03340 0.56 +0.5

Or see this region's nucleotide sequence