Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03095 and DDA3937_RS23000 are separated by 108 nucleotides DDA3937_RS23000 and DDA3937_RS03100 are separated by 12 nucleotides DDA3937_RS03100 and DDA3937_RS03105 are separated by 65 nucleotides
DDA3937_RS03095: DDA3937_RS03095 - lipoprotein NlpI, at 682,752 to 683,636
_RS03095
DDA3937_RS23000: DDA3937_RS23000 - protein YrbN, at 683,745 to 683,804
_RS23000
DDA3937_RS03100: DDA3937_RS03100 - DEAD/DEAH family ATP-dependent RNA helicase, at 683,817 to 685,712
_RS03100
DDA3937_RS03105: DDA3937_RS03105 - LLM class flavin-dependent oxidoreductase, at 685,778 to 686,797
_RS03105
Position (kb) 683
684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.946 kb on - strand, within DDA3937_RS03095 at 682.946 kb on - strand, within DDA3937_RS03095 at 682.947 kb on + strand, within DDA3937_RS03095 at 682.947 kb on + strand, within DDA3937_RS03095 at 682.948 kb on - strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.966 kb on - strand, within DDA3937_RS03095 at 682.966 kb on - strand, within DDA3937_RS03095 at 683.052 kb on + strand, within DDA3937_RS03095 at 683.064 kb on + strand, within DDA3937_RS03095 at 683.065 kb on - strand, within DDA3937_RS03095 at 683.098 kb on - strand at 683.116 kb on + strand, within DDA3937_RS03095 at 683.119 kb on + strand, within DDA3937_RS03095 at 683.136 kb on + strand, within DDA3937_RS03095 at 683.136 kb on + strand, within DDA3937_RS03095 at 683.137 kb on - strand, within DDA3937_RS03095 at 683.173 kb on - strand, within DDA3937_RS03095 at 683.173 kb on - strand, within DDA3937_RS03095 at 683.175 kb on + strand, within DDA3937_RS03095 at 683.213 kb on - strand, within DDA3937_RS03095 at 683.319 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.421 kb on - strand at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.470 kb on + strand, within DDA3937_RS03095 at 683.470 kb on + strand, within DDA3937_RS03095 at 683.474 kb on + strand, within DDA3937_RS03095 at 683.474 kb on + strand, within DDA3937_RS03095 at 683.481 kb on + strand, within DDA3937_RS03095 at 683.482 kb on - strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.593 kb on + strand at 683.593 kb on + strand at 683.593 kb on + strand at 683.614 kb on + strand at 683.614 kb on + strand at 683.615 kb on - strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.635 kb on - strand at 684.775 kb on - strand, within DDA3937_RS03100 at 685.023 kb on + strand, within DDA3937_RS03100 at 685.024 kb on - strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.333 kb on + strand, within DDA3937_RS03100 at 685.347 kb on - strand, within DDA3937_RS03100 at 685.611 kb on - strand at 685.774 kb on + strand at 685.862 kb on + strand at 686.063 kb on - strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.145 kb on + strand, within DDA3937_RS03105 at 686.145 kb on + strand, within DDA3937_RS03105 at 686.146 kb on - strand, within DDA3937_RS03105 at 686.146 kb on - strand at 686.146 kb on - strand, within DDA3937_RS03105 at 686.146 kb on - strand at 686.212 kb on + strand, within DDA3937_RS03105 at 686.212 kb on + strand, within DDA3937_RS03105 at 686.277 kb on + strand, within DDA3937_RS03105 at 686.278 kb on - strand, within DDA3937_RS03105 at 686.337 kb on - strand, within DDA3937_RS03105 at 686.384 kb on + strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.485 kb on + strand, within DDA3937_RS03105 at 686.581 kb on + strand, within DDA3937_RS03105 at 686.604 kb on + strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.623 kb on + strand, within DDA3937_RS03105 at 686.623 kb on + strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 682,945 + DDA3937_RS03095 0.22 +0.0 682,945 + DDA3937_RS03095 0.22 +1.7 682,945 + DDA3937_RS03095 0.22 -1.2 682,946 - DDA3937_RS03095 0.22 -0.1 682,946 - DDA3937_RS03095 0.22 +2.3 682,947 + DDA3937_RS03095 0.22 +1.0 682,947 + DDA3937_RS03095 0.22 +0.7 682,948 - DDA3937_RS03095 0.22 +0.4 682,965 + DDA3937_RS03095 0.24 -1.4 682,965 + DDA3937_RS03095 0.24 +4.0 682,965 + DDA3937_RS03095 0.24 -1.2 682,965 + DDA3937_RS03095 0.24 -0.2 682,965 + DDA3937_RS03095 0.24 -1.6 682,966 - DDA3937_RS03095 0.24 +0.9 682,966 - DDA3937_RS03095 0.24 -0.9 683,052 + DDA3937_RS03095 0.34 +0.3 683,064 + DDA3937_RS03095 0.35 -0.5 683,065 - DDA3937_RS03095 0.35 -0.2 683,098 - -0.2 683,116 + DDA3937_RS03095 0.41 +1.4 683,119 + DDA3937_RS03095 0.41 -0.7 683,136 + DDA3937_RS03095 0.43 +0.9 683,136 + DDA3937_RS03095 0.43 -1.4 683,137 - DDA3937_RS03095 0.44 +0.8 683,173 - DDA3937_RS03095 0.48 -0.2 683,173 - DDA3937_RS03095 0.48 +0.6 683,175 + DDA3937_RS03095 0.48 -0.6 683,213 - DDA3937_RS03095 0.52 +1.7 683,319 + DDA3937_RS03095 0.64 -0.1 683,420 + DDA3937_RS03095 0.75 +0.4 683,420 + DDA3937_RS03095 0.75 -0.5 683,420 + DDA3937_RS03095 0.75 +0.2 683,420 + DDA3937_RS03095 0.75 +1.1 683,421 - +0.4 683,466 + DDA3937_RS03095 0.81 -0.9 683,466 + DDA3937_RS03095 0.81 +1.0 683,466 + DDA3937_RS03095 0.81 -0.4 683,466 + DDA3937_RS03095 0.81 +0.5 683,467 - DDA3937_RS03095 0.81 -0.2 683,467 - DDA3937_RS03095 0.81 -0.9 683,467 - DDA3937_RS03095 0.81 -1.6 683,470 + DDA3937_RS03095 0.81 +0.1 683,470 + DDA3937_RS03095 0.81 -0.4 683,474 + DDA3937_RS03095 0.82 +2.1 683,474 + DDA3937_RS03095 0.82 +0.2 683,481 + DDA3937_RS03095 0.82 +0.8 683,482 - DDA3937_RS03095 0.82 -1.4 683,485 + DDA3937_RS03095 0.83 +0.3 683,485 + DDA3937_RS03095 0.83 +0.4 683,485 + DDA3937_RS03095 0.83 +0.7 683,485 + DDA3937_RS03095 0.83 +0.7 683,485 + DDA3937_RS03095 0.83 +2.8 683,486 - DDA3937_RS03095 0.83 -1.1 683,486 - DDA3937_RS03095 0.83 -0.6 683,486 - DDA3937_RS03095 0.83 +0.6 683,486 - DDA3937_RS03095 0.83 -0.9 683,486 - DDA3937_RS03095 0.83 -1.9 683,486 - DDA3937_RS03095 0.83 -0.4 683,486 - DDA3937_RS03095 0.83 -0.4 683,593 + +1.2 683,593 + +0.1 683,593 + +1.1 683,614 + -1.5 683,614 + -0.0 683,615 - +2.1 683,634 + +1.1 683,634 + -1.0 683,634 + +0.1 683,634 + -1.4 683,634 + +0.7 683,635 - -0.7 684,775 - DDA3937_RS03100 0.51 -1.2 685,023 + DDA3937_RS03100 0.64 -1.9 685,024 - DDA3937_RS03100 0.64 -2.1 685,211 + DDA3937_RS03100 0.74 +0.6 685,211 + DDA3937_RS03100 0.74 -0.0 685,211 + DDA3937_RS03100 0.74 +2.0 685,333 + DDA3937_RS03100 0.80 -1.2 685,347 - DDA3937_RS03100 0.81 -1.2 685,611 - -2.3 685,774 + -1.8 685,862 + -1.2 686,063 - DDA3937_RS03105 0.28 -0.2 686,135 + DDA3937_RS03105 0.35 +0.3 686,135 + DDA3937_RS03105 0.35 +0.8 686,135 + DDA3937_RS03105 0.35 -0.3 686,136 - DDA3937_RS03105 0.35 +0.5 686,136 - DDA3937_RS03105 0.35 -1.3 686,136 - DDA3937_RS03105 0.35 -0.2 686,136 - DDA3937_RS03105 0.35 -1.6 686,136 - DDA3937_RS03105 0.35 -2.5 686,136 - DDA3937_RS03105 0.35 +0.1 686,145 + DDA3937_RS03105 0.36 -2.2 686,145 + DDA3937_RS03105 0.36 -0.4 686,146 - DDA3937_RS03105 0.36 -1.3 686,146 - -0.6 686,146 - DDA3937_RS03105 0.36 +1.3 686,146 - +2.4 686,212 + DDA3937_RS03105 0.43 +0.1 686,212 + DDA3937_RS03105 0.43 -0.9 686,277 + DDA3937_RS03105 0.49 -1.6 686,278 - DDA3937_RS03105 0.49 +0.1 686,337 - DDA3937_RS03105 0.55 +1.7 686,384 + DDA3937_RS03105 0.59 -0.6 686,385 - DDA3937_RS03105 0.60 +1.1 686,385 - DDA3937_RS03105 0.60 -0.9 686,385 - DDA3937_RS03105 0.60 +0.4 686,485 + DDA3937_RS03105 0.69 +0.6 686,581 + DDA3937_RS03105 0.79 -1.8 686,604 + DDA3937_RS03105 0.81 +0.4 686,605 - DDA3937_RS03105 0.81 -0.4 686,605 - DDA3937_RS03105 0.81 +0.2 686,605 - DDA3937_RS03105 0.81 +1.0 686,623 + DDA3937_RS03105 0.83 -0.9 686,623 + DDA3937_RS03105 0.83 -2.1 686,624 - DDA3937_RS03105 0.83 -1.3 686,624 - DDA3937_RS03105 0.83 -0.3 686,624 - DDA3937_RS03105 0.83 +0.2 686,624 - DDA3937_RS03105 0.83 +1.2 686,624 - DDA3937_RS03105 0.83 -0.5 686,624 - DDA3937_RS03105 0.83 -1.2
Or see this region's nucleotide sequence