Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02520 and DDA3937_RS02525 are separated by 139 nucleotides DDA3937_RS02525 and DDA3937_RS02530 are separated by 234 nucleotides DDA3937_RS02530 and DDA3937_RS02535 overlap by 16 nucleotides
DDA3937_RS02520: DDA3937_RS02520 - alkyl hydroperoxide reductase subunit F, at 557,186 to 558,748
_RS02520
DDA3937_RS02525: DDA3937_RS02525 - DUF1868 domain-containing protein, at 558,888 to 559,718
_RS02525
DDA3937_RS02530: DDA3937_RS02530 - acetyltransferase, at 559,953 to 560,633
_RS02530
DDA3937_RS02535: DDA3937_RS02535 - hydroxyisourate hydrolase, at 560,618 to 560,950
_RS02535
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 557.957 kb on + strand, within DDA3937_RS02520 at 557.958 kb on - strand, within DDA3937_RS02520 at 557.958 kb on - strand, within DDA3937_RS02520 at 558.215 kb on + strand, within DDA3937_RS02520 at 558.215 kb on + strand, within DDA3937_RS02520 at 558.215 kb on + strand, within DDA3937_RS02520 at 558.215 kb on + strand at 558.216 kb on - strand, within DDA3937_RS02520 at 558.216 kb on - strand, within DDA3937_RS02520 at 558.250 kb on + strand, within DDA3937_RS02520 at 558.251 kb on - strand, within DDA3937_RS02520 at 558.469 kb on + strand, within DDA3937_RS02520 at 558.470 kb on + strand, within DDA3937_RS02520 at 558.485 kb on - strand, within DDA3937_RS02520 at 558.633 kb on + strand at 558.665 kb on + strand at 558.666 kb on - strand at 558.726 kb on - strand at 558.807 kb on + strand at 558.808 kb on - strand at 558.808 kb on - strand at 558.953 kb on + strand at 558.954 kb on - strand at 558.954 kb on - strand at 558.954 kb on - strand at 558.954 kb on - strand at 559.015 kb on + strand, within DDA3937_RS02525 at 559.016 kb on - strand, within DDA3937_RS02525 at 559.016 kb on - strand, within DDA3937_RS02525 at 559.045 kb on + strand, within DDA3937_RS02525 at 559.045 kb on + strand, within DDA3937_RS02525 at 559.046 kb on - strand, within DDA3937_RS02525 at 559.094 kb on + strand, within DDA3937_RS02525 at 559.094 kb on + strand, within DDA3937_RS02525 at 559.095 kb on - strand, within DDA3937_RS02525 at 559.108 kb on + strand, within DDA3937_RS02525 at 559.108 kb on + strand, within DDA3937_RS02525 at 559.112 kb on + strand, within DDA3937_RS02525 at 559.112 kb on + strand, within DDA3937_RS02525 at 559.113 kb on - strand, within DDA3937_RS02525 at 559.113 kb on - strand, within DDA3937_RS02525 at 559.250 kb on + strand, within DDA3937_RS02525 at 559.299 kb on - strand, within DDA3937_RS02525 at 559.299 kb on - strand, within DDA3937_RS02525 at 559.365 kb on + strand, within DDA3937_RS02525 at 559.365 kb on + strand, within DDA3937_RS02525 at 559.366 kb on - strand, within DDA3937_RS02525 at 559.411 kb on + strand, within DDA3937_RS02525 at 559.412 kb on - strand, within DDA3937_RS02525 at 559.412 kb on - strand, within DDA3937_RS02525 at 559.499 kb on + strand, within DDA3937_RS02525 at 559.523 kb on + strand, within DDA3937_RS02525 at 559.523 kb on + strand at 559.523 kb on + strand, within DDA3937_RS02525 at 559.524 kb on - strand, within DDA3937_RS02525 at 559.524 kb on - strand, within DDA3937_RS02525 at 559.524 kb on - strand, within DDA3937_RS02525 at 559.664 kb on + strand at 559.665 kb on - strand at 559.665 kb on - strand at 559.669 kb on + strand at 559.670 kb on - strand at 559.689 kb on + strand at 559.689 kb on + strand at 559.690 kb on - strand at 559.690 kb on - strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.718 kb on + strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.719 kb on - strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.745 kb on + strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.746 kb on - strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.749 kb on + strand at 559.750 kb on - strand at 559.750 kb on - strand at 559.750 kb on - strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.755 kb on + strand at 559.756 kb on - strand at 559.756 kb on - strand at 559.756 kb on - strand at 559.772 kb on + strand at 559.772 kb on + strand at 559.824 kb on - strand at 559.953 kb on - strand at 559.953 kb on - strand at 559.953 kb on - strand at 560.011 kb on + strand at 560.011 kb on + strand at 560.012 kb on - strand at 560.025 kb on - strand, within DDA3937_RS02530 at 560.061 kb on - strand, within DDA3937_RS02530 at 560.065 kb on + strand, within DDA3937_RS02530 at 560.065 kb on + strand, within DDA3937_RS02530 at 560.066 kb on - strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.091 kb on + strand, within DDA3937_RS02530 at 560.092 kb on - strand, within DDA3937_RS02530 at 560.092 kb on - strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.097 kb on + strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.098 kb on - strand, within DDA3937_RS02530 at 560.126 kb on + strand, within DDA3937_RS02530 at 560.220 kb on + strand, within DDA3937_RS02530 at 560.231 kb on + strand, within DDA3937_RS02530 at 560.232 kb on - strand, within DDA3937_RS02530 at 560.232 kb on - strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.275 kb on + strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.276 kb on - strand, within DDA3937_RS02530 at 560.298 kb on - strand, within DDA3937_RS02530 at 560.581 kb on - strand at 560.586 kb on + strand at 560.631 kb on + strand at 560.632 kb on - strand at 560.635 kb on + strand at 560.635 kb on + strand at 560.674 kb on - strand, within DDA3937_RS02535 at 560.718 kb on + strand at 560.718 kb on + strand, within DDA3937_RS02535
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 557,957 + DDA3937_RS02520 0.49 -1.8 557,958 - DDA3937_RS02520 0.49 +0.4 557,958 - DDA3937_RS02520 0.49 +0.3 558,215 + DDA3937_RS02520 0.66 -0.2 558,215 + DDA3937_RS02520 0.66 -1.0 558,215 + DDA3937_RS02520 0.66 -2.3 558,215 + -0.2 558,216 - DDA3937_RS02520 0.66 +0.2 558,216 - DDA3937_RS02520 0.66 +0.4 558,250 + DDA3937_RS02520 0.68 +0.9 558,251 - DDA3937_RS02520 0.68 +0.3 558,469 + DDA3937_RS02520 0.82 +1.4 558,470 + DDA3937_RS02520 0.82 +0.5 558,485 - DDA3937_RS02520 0.83 -0.6 558,633 + +0.6 558,665 + -0.4 558,666 - -0.2 558,726 - -0.5 558,807 + -1.6 558,808 - -0.4 558,808 - -1.6 558,953 + -1.8 558,954 - -1.2 558,954 - -0.6 558,954 - +0.3 558,954 - -0.6 559,015 + DDA3937_RS02525 0.15 -2.5 559,016 - DDA3937_RS02525 0.15 -1.8 559,016 - DDA3937_RS02525 0.15 +0.7 559,045 + DDA3937_RS02525 0.19 -0.0 559,045 + DDA3937_RS02525 0.19 -1.5 559,046 - DDA3937_RS02525 0.19 +0.5 559,094 + DDA3937_RS02525 0.25 -1.0 559,094 + DDA3937_RS02525 0.25 -0.3 559,095 - DDA3937_RS02525 0.25 +0.6 559,108 + DDA3937_RS02525 0.26 -2.1 559,108 + DDA3937_RS02525 0.26 +0.2 559,112 + DDA3937_RS02525 0.27 -0.6 559,112 + DDA3937_RS02525 0.27 -0.5 559,113 - DDA3937_RS02525 0.27 -1.7 559,113 - DDA3937_RS02525 0.27 -1.4 559,250 + DDA3937_RS02525 0.44 +1.0 559,299 - DDA3937_RS02525 0.49 -1.2 559,299 - DDA3937_RS02525 0.49 +0.6 559,365 + DDA3937_RS02525 0.57 +0.4 559,365 + DDA3937_RS02525 0.57 -1.5 559,366 - DDA3937_RS02525 0.58 -0.9 559,411 + DDA3937_RS02525 0.63 -0.1 559,412 - DDA3937_RS02525 0.63 -0.2 559,412 - DDA3937_RS02525 0.63 -0.5 559,499 + DDA3937_RS02525 0.74 -0.1 559,523 + DDA3937_RS02525 0.76 +0.4 559,523 + +1.8 559,523 + DDA3937_RS02525 0.76 +0.4 559,524 - DDA3937_RS02525 0.77 -0.0 559,524 - DDA3937_RS02525 0.77 -0.3 559,524 - DDA3937_RS02525 0.77 -2.1 559,664 + -1.9 559,665 - -0.4 559,665 - +1.1 559,669 + -0.3 559,670 - -1.1 559,689 + +1.2 559,689 + +0.1 559,690 - -0.8 559,690 - -0.6 559,718 + -0.0 559,718 + +0.4 559,718 + +0.0 559,718 + -1.3 559,718 + -1.7 559,719 - +1.0 559,719 - -0.3 559,719 - -2.1 559,719 - +0.2 559,719 - +0.1 559,719 - +0.0 559,719 - +0.9 559,719 - -0.1 559,745 + -0.2 559,745 + -1.4 559,745 + -2.2 559,745 + -0.4 559,745 + -0.3 559,746 - +1.3 559,746 - +0.4 559,746 - -0.7 559,746 - -0.0 559,746 - -0.6 559,746 - -2.2 559,746 - -0.3 559,746 - +1.4 559,746 - -1.0 559,749 + +0.9 559,749 + -1.4 559,749 + +0.4 559,749 + -0.7 559,750 - +0.1 559,750 - +1.1 559,750 - +1.7 559,755 + -1.4 559,755 + +0.4 559,755 + +0.0 559,755 + -0.1 559,755 + -0.2 559,755 + -1.4 559,756 - +0.5 559,756 - +1.2 559,756 - -0.1 559,772 + +0.4 559,772 + +2.1 559,824 - +1.0 559,953 - +0.2 559,953 - -0.2 559,953 - -0.2 560,011 + -0.6 560,011 + -1.3 560,012 - +1.4 560,025 - DDA3937_RS02530 0.11 +0.5 560,061 - DDA3937_RS02530 0.16 +1.1 560,065 + DDA3937_RS02530 0.16 +0.4 560,065 + DDA3937_RS02530 0.16 +0.2 560,066 - DDA3937_RS02530 0.17 +1.9 560,091 + DDA3937_RS02530 0.20 -1.6 560,091 + DDA3937_RS02530 0.20 -0.2 560,091 + DDA3937_RS02530 0.20 -0.2 560,091 + DDA3937_RS02530 0.20 +1.6 560,092 - DDA3937_RS02530 0.20 +0.3 560,092 - DDA3937_RS02530 0.20 +0.2 560,097 + DDA3937_RS02530 0.21 +0.1 560,097 + DDA3937_RS02530 0.21 +0.4 560,097 + DDA3937_RS02530 0.21 -0.3 560,097 + DDA3937_RS02530 0.21 -1.2 560,097 + DDA3937_RS02530 0.21 +1.0 560,097 + DDA3937_RS02530 0.21 -0.4 560,097 + DDA3937_RS02530 0.21 +0.6 560,097 + DDA3937_RS02530 0.21 -0.1 560,098 - DDA3937_RS02530 0.21 +0.5 560,098 - DDA3937_RS02530 0.21 +1.8 560,098 - DDA3937_RS02530 0.21 +1.4 560,098 - DDA3937_RS02530 0.21 -1.9 560,098 - DDA3937_RS02530 0.21 -0.6 560,126 + DDA3937_RS02530 0.25 +1.6 560,220 + DDA3937_RS02530 0.39 +0.3 560,231 + DDA3937_RS02530 0.41 +1.6 560,232 - DDA3937_RS02530 0.41 -0.2 560,232 - DDA3937_RS02530 0.41 -0.4 560,275 + DDA3937_RS02530 0.47 -1.4 560,275 + DDA3937_RS02530 0.47 -0.6 560,275 + DDA3937_RS02530 0.47 +2.0 560,276 - DDA3937_RS02530 0.47 -0.4 560,276 - DDA3937_RS02530 0.47 -0.9 560,276 - DDA3937_RS02530 0.47 +0.6 560,298 - DDA3937_RS02530 0.51 +0.3 560,581 - -1.8 560,586 + -1.6 560,631 + +0.4 560,632 - -1.9 560,635 + -0.8 560,635 + -0.5 560,674 - DDA3937_RS02535 0.17 +0.9 560,718 + +0.1 560,718 + DDA3937_RS02535 0.30 -1.0
Or see this region's nucleotide sequence