Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00580

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
137,291	+		DDA3937_RS21740	0.80	-0.3
137,291	+		DDA3937_RS21740	0.80	+0.1
137,314	+		DDA3937_RS21740	0.86	+0.2
137,315	-		DDA3937_RS21740	0.87	+0.0
137,315	-		DDA3937_RS21740	0.87	+0.9
137,400	+				-0.8
137,429	+				-1.1
137,429	+				-0.3
137,448	+				+0.3
137,449	-				+0.1
137,677	+		DDA3937_RS00575	0.50	+0.7
137,880	+				+0.3
137,899	+				+1.1
137,900	-				-0.7
137,900	-				+0.6
137,911	+				+0.4
137,912	-				+0.2
137,912	-				+1.2
137,978	+				+0.0
137,978	+				-0.8
137,979	-				+1.4
138,046	+				-2.1
138,046	+				-0.5
138,047	-				+0.1
138,047	-				-0.7
138,047	-				-0.1
138,047	-				+0.5
138,047	-				-0.2
138,047	-				-0.2
138,048	+				+1.1
138,110	-				+0.7
138,145	+				+0.6
138,146	-				-0.1
138,146	-				+0.5
138,162	+				-1.2
138,162	+				-0.1
138,162	+				+0.1
138,162	+				-0.5
138,162	+				-2.2
138,162	+				-0.5
138,162	+				+0.8
138,162	+				-0.4
138,163	-				+3.2
138,163	-				-0.1
138,163	-				-0.7
138,163	-				-0.2
138,163	-				+0.7
138,163	-				+0.3
138,167	+				-0.6
138,167	+				-0.2
138,168	-				-0.2
138,168	-				-2.0
138,194	-				-0.3
138,198	+				+1.0
138,199	-				-1.3
138,230	+				-0.8
138,232	+				-1.4
138,233	-				-2.1
138,233	-				-0.8
138,233	-				-0.3
138,233	-				-1.8
138,362	+		DDA3937_RS00580	0.13	-0.8
138,394	-		DDA3937_RS00580	0.16	-0.8
138,394	-		DDA3937_RS00580	0.16	-0.7
138,443	-		DDA3937_RS00580	0.22	-2.0
138,459	+		DDA3937_RS00580	0.23	-1.8
138,460	-		DDA3937_RS00580	0.23	-1.1
138,564	+		DDA3937_RS00580	0.35	-1.2
138,564	+		DDA3937_RS00580	0.35	-3.4
138,565	-		DDA3937_RS00580	0.35	-1.2
138,612	+		DDA3937_RS00580	0.40	-2.8
138,613	-		DDA3937_RS00580	0.40	-3.4
138,620	+		DDA3937_RS00580	0.41	-1.4
138,621	-		DDA3937_RS00580	0.41	-1.8
138,666	-		DDA3937_RS00580	0.46	-1.3
138,666	-		DDA3937_RS00580	0.46	+2.4
138,669	+		DDA3937_RS00580	0.46	-2.0
138,669	+		DDA3937_RS00580	0.46	-2.3
138,669	+		DDA3937_RS00580	0.46	-3.5
138,670	-		DDA3937_RS00580	0.46	-2.6
138,670	-		DDA3937_RS00580	0.46	-1.5
138,776	+		DDA3937_RS00580	0.57	-2.2
138,777	-		DDA3937_RS00580	0.57	-1.9
138,777	-		DDA3937_RS00580	0.57	-2.4
138,777	-		DDA3937_RS00580	0.57	-1.7
138,777	-		DDA3937_RS00580	0.57	-1.5
138,777	-		DDA3937_RS00580	0.57	-0.1
138,777	-		DDA3937_RS00580	0.57	-2.7
138,777	-		DDA3937_RS00580	0.57	-1.3
138,782	+		DDA3937_RS00580	0.58	-1.7
138,783	-		DDA3937_RS00580	0.58	-1.1
138,783	-		DDA3937_RS00580	0.58	-2.2
138,869	+		DDA3937_RS00580	0.67	-0.4
138,869	+		DDA3937_RS00580	0.67	-0.7
138,870	-		DDA3937_RS00580	0.67	-3.4
138,870	-		DDA3937_RS00580	0.67	-0.5
138,908	+		DDA3937_RS00580	0.71	-1.6
138,908	+		DDA3937_RS00580	0.71	-1.5
138,908	+		DDA3937_RS00580	0.71	-0.5
138,908	+				-0.5
138,909	-		DDA3937_RS00580	0.72	-4.3
138,909	-		DDA3937_RS00580	0.72	-0.3
139,022	+		DDA3937_RS00580	0.84	+3.5
139,022	+		DDA3937_RS00580	0.84	-2.3
139,022	+		DDA3937_RS00580	0.84	-2.7
139,022	+		DDA3937_RS00580	0.84	+0.1
139,022	+		DDA3937_RS00580	0.84	-1.5
139,022	+		DDA3937_RS00580	0.84	+0.0
139,022	+		DDA3937_RS00580	0.84	-0.8
139,022	+		DDA3937_RS00580	0.84	-2.9
139,022	+		DDA3937_RS00580	0.84	-2.2
139,023	-		DDA3937_RS00580	0.84	-3.1
139,023	-		DDA3937_RS00580	0.84	-0.5
139,023	-		DDA3937_RS00580	0.84	-2.1
139,023	-		DDA3937_RS00580	0.84	-2.0
139,023	-		DDA3937_RS00580	0.84	-1.0
139,023	-		DDA3937_RS00580	0.84	-0.7
139,023	-		DDA3937_RS00580	0.84	-1.3
139,023	-		DDA3937_RS00580	0.84	-2.0
139,023	-		DDA3937_RS00580	0.84	-2.1
139,023	-		DDA3937_RS00580	0.84	-1.2
139,023	-		DDA3937_RS00580	0.84	-1.0
139,023	-		DDA3937_RS00580	0.84	-0.8
139,027	+		DDA3937_RS00580	0.84	-2.6
139,027	+		DDA3937_RS00580	0.84	-2.4
139,027	+		DDA3937_RS00580	0.84	-3.1
139,027	+		DDA3937_RS00580	0.84	+0.4
139,027	+		DDA3937_RS00580	0.84	-1.3
139,028	-		DDA3937_RS00580	0.84	-0.1
139,028	-		DDA3937_RS00580	0.84	-0.9
139,028	-		DDA3937_RS00580	0.84	-3.8
139,028	-		DDA3937_RS00580	0.84	-3.0
139,048	+		DDA3937_RS00580	0.86	-1.7
139,064	+		DDA3937_RS00580	0.88	-2.1
139,064	+		DDA3937_RS00580	0.88	-2.8
139,064	+				-0.5
139,064	+		DDA3937_RS00580	0.88	-1.9
139,064	+		DDA3937_RS00580	0.88	-0.8
139,149	+				-1.8
139,187	+				-1.3
139,187	+				-0.1
139,235	+				-3.1
139,236	-				-1.3
139,236	-				+0.4
139,236	-				+0.5
139,308	-				-0.8
139,308	-				-0.9
139,308	-				-1.1
139,308	-				+0.5
139,308	-				-0.4
139,308	-				+0.4
139,328	+				+0.2
139,328	+				-2.3
139,329	-				-2.1
139,329	-				-0.4
139,329	-				-0.2
139,329	-				-2.5
139,336	-				-3.1
139,341	+				-1.1
139,341	+				+0.8
139,341	+				+2.2
139,341	+				-0.7
139,342	-				+0.1
139,342	-				+0.4
139,342	-				+1.0
139,578	-				-0.8
139,578	-				-1.5
139,578	-				-1.2
139,582	+				+0.2
139,582	+				+0.7
139,583	-				-0.2
139,583	-				-0.0
139,583	-				-0.3
139,590	+				+1.3
139,632	+				+0.4
139,633	-				-2.0
139,633	-				+0.3
139,633	-				-1.7
139,703	+				-2.1
139,704	-				-1.0
139,879	+		DDA3937_RS00590	0.28	-0.3
139,880	-		DDA3937_RS00590	0.28	-1.1
139,880	-		DDA3937_RS00590	0.28	+0.6
139,898	+		DDA3937_RS00590	0.30	-1.8
139,898	+		DDA3937_RS00590	0.30	-2.3
139,898	+		DDA3937_RS00590	0.30	-0.2
139,898	+		DDA3937_RS00590	0.30	-0.4
139,899	-		DDA3937_RS00590	0.30	-0.4
139,899	-		DDA3937_RS00590	0.30	-0.4
139,912	-		DDA3937_RS00590	0.31	+0.8
140,028	+		DDA3937_RS00590	0.43	+1.9
140,087	+		DDA3937_RS00590	0.49	+1.2
140,088	-		DDA3937_RS00590	0.49	+0.0
140,088	-		DDA3937_RS00590	0.49	-1.3