Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21235

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,833,536	-				-0.5
4,833,565	-				+0.4
4,833,597	+				+0.1
4,833,597	+				-0.9
4,833,597	+				-1.3
4,833,597	+				-0.4
4,833,597	+				-0.7
4,833,597	+				-0.8
4,833,598	-				+1.1
4,833,598	-				+1.7
4,833,598	-				-0.6
4,833,598	-				-0.3
4,833,598	-				+1.7
4,833,598	-				+0.7
4,833,598	-				-0.3
4,833,599	+				-0.9
4,833,599	+				-1.3
4,833,600	-				-2.4
4,833,668	-		DDA3937_RS21230	0.15	-0.0
4,833,741	+		DDA3937_RS21230	0.25	+1.2
4,833,754	+		DDA3937_RS21230	0.27	-0.4
4,833,754	+		DDA3937_RS21230	0.27	+0.8
4,833,776	+		DDA3937_RS21230	0.30	-1.3
4,833,860	+		DDA3937_RS21230	0.41	-1.5
4,833,860	+		DDA3937_RS21230	0.41	+0.1
4,833,860	+		DDA3937_RS21230	0.41	+0.1
4,833,861	-		DDA3937_RS21230	0.41	-0.4
4,833,861	-		DDA3937_RS21230	0.41	-0.5
4,833,900	+		DDA3937_RS21230	0.47	-1.1
4,833,900	+		DDA3937_RS21230	0.47	-0.3
4,833,900	+		DDA3937_RS21230	0.47	-0.0
4,833,901	-		DDA3937_RS21230	0.47	+1.4
4,833,901	-		DDA3937_RS21230	0.47	+0.1
4,833,972	-		DDA3937_RS21230	0.57	-1.7
4,834,014	+		DDA3937_RS21230	0.62	-0.1
4,834,162	-		DDA3937_RS21230	0.82	-0.6
4,834,178	+		DDA3937_RS21230	0.85	+1.2
4,834,178	+		DDA3937_RS21230	0.85	+1.1
4,834,179	-		DDA3937_RS21230	0.85	+1.0
4,834,179	-		DDA3937_RS21230	0.85	-1.1
4,834,179	-		DDA3937_RS21230	0.85	-2.4
4,834,274	+				-0.5
4,834,274	+				+0.7
4,834,274	+				-0.8
4,834,275	-				-1.3
4,834,275	-				-0.4
4,834,275	-				-1.5
4,834,290	+				-1.6
4,834,290	+				-0.1
4,834,291	-				+1.7
4,834,296	+				-0.4
4,834,296	+				-0.3
4,834,296	+				+1.7
4,834,296	+				-1.6
4,834,297	-				-0.9
4,834,297	-				-0.2
4,834,297	-				-2.4
4,834,297	-				+3.5
4,834,297	-				-0.9
4,834,428	-				-1.7
4,834,440	+				-1.6
4,834,467	+				-0.7
4,834,467	+				+0.3
4,834,468	-				+0.4
4,834,473	+				-2.0
4,834,473	+				-0.7
4,834,474	-				-1.5
4,834,474	-				-0.6
4,834,497	+				-0.2
4,834,497	+				-1.7
4,834,497	+				+0.2
4,834,522	-				-0.0
4,834,522	-				+0.1
4,834,594	+				-0.4
4,834,594	+				-1.4
4,834,990	+		DDA3937_RS21235	0.36	-0.7
4,835,013	+		DDA3937_RS21235	0.38	-1.1
4,835,014	-		DDA3937_RS21235	0.38	+0.2
4,835,014	-		DDA3937_RS21235	0.38	-0.1
4,835,014	-		DDA3937_RS21235	0.38	-0.2
4,835,255	-		DDA3937_RS21235	0.56	-0.7
4,835,296	+		DDA3937_RS21235	0.59	-0.1
4,835,296	+		DDA3937_RS21235	0.59	-1.0
4,835,296	+		DDA3937_RS21235	0.59	-1.3
4,835,296	+		DDA3937_RS21235	0.59	-0.4
4,835,296	+		DDA3937_RS21235	0.59	+0.3
4,835,296	+		DDA3937_RS21235	0.59	+0.4
4,835,296	+		DDA3937_RS21235	0.59	-0.6
4,835,296	+		DDA3937_RS21235	0.59	-1.3
4,835,297	-		DDA3937_RS21235	0.59	-0.3
4,835,297	-		DDA3937_RS21235	0.59	-1.1
4,835,297	-		DDA3937_RS21235	0.59	+0.1
4,835,297	-		DDA3937_RS21235	0.59	-2.0
4,835,350	-		DDA3937_RS21235	0.63	-1.2
4,835,581	-		DDA3937_RS21235	0.80	+0.9
4,835,612	+		DDA3937_RS21235	0.82	-0.4
4,835,612	+		DDA3937_RS21235	0.82	-0.3
4,835,613	-		DDA3937_RS21235	0.82	-1.6
4,835,632	+		DDA3937_RS21235	0.84	-0.4
4,835,632	+		DDA3937_RS21235	0.84	-1.3
4,835,632	+		DDA3937_RS21235	0.84	-0.7
4,835,632	+		DDA3937_RS21235	0.84	+0.0
4,835,632	+		DDA3937_RS21235	0.84	-1.4
4,835,632	+		DDA3937_RS21235	0.84	-1.3
4,835,632	+		DDA3937_RS21235	0.84	-0.9
4,835,633	-		DDA3937_RS21235	0.84	-0.3
4,835,633	-		DDA3937_RS21235	0.84	+2.0
4,835,633	-		DDA3937_RS21235	0.84	-0.9
4,835,633	-		DDA3937_RS21235	0.84	-1.2
4,835,633	-		DDA3937_RS21235	0.84	+0.1
4,835,633	-		DDA3937_RS21235	0.84	-0.8
4,835,633	-		DDA3937_RS21235	0.84	+0.3
4,835,666	-		DDA3937_RS21235	0.86	+0.6
4,835,666	-		DDA3937_RS21235	0.86	-1.0
4,835,688	+		DDA3937_RS21235	0.88	-0.1
4,835,689	-		DDA3937_RS21235	0.88	-0.6
4,835,689	-		DDA3937_RS21235	0.88	-1.6
4,835,760	-				+1.7
4,835,789	-				+2.4
4,835,848	+				-0.4
4,835,848	+				-0.1
4,835,849	-				-0.5
4,835,906	+				+0.1
4,835,906	+				+0.2
4,835,906	+				+1.4
4,835,907	-				-1.7
4,835,907	-				+0.0
4,835,907	-				-0.1
4,835,930	+				-0.7
4,835,931	-				+2.3
4,835,931	-				+0.7
4,835,944	+				+0.5
4,835,945	-				-0.9
4,835,945	-				-1.2
4,835,956	+				+0.4
4,835,957	-				-1.3
4,835,986	+				+1.5
4,835,987	-				+0.3
4,836,005	+				+0.6
4,836,005	+				-0.9
4,836,005	+				+1.0
4,836,005	+				-2.0
4,836,005	+				-0.3
4,836,005	+				+0.6
4,836,006	-				-0.6
4,836,006	-				-1.5
4,836,006	-				+0.8
4,836,006	-				-0.6
4,836,006	-				-0.3
4,836,040	+		DDA3937_RS21240	0.11	-0.8
4,836,044	-		DDA3937_RS21240	0.11	-0.4
4,836,085	+		DDA3937_RS21240	0.14	-0.5
4,836,085	+		DDA3937_RS21240	0.14	+0.1
4,836,086	-		DDA3937_RS21240	0.14	+2.0
4,836,096	-		DDA3937_RS21240	0.15	+0.3
4,836,174	+		DDA3937_RS21240	0.20	-0.2
4,836,174	+		DDA3937_RS21240	0.20	+0.1
4,836,174	+		DDA3937_RS21240	0.20	-0.5
4,836,175	-		DDA3937_RS21240	0.20	+0.3
4,836,175	-		DDA3937_RS21240	0.20	-1.7
4,836,175	-		DDA3937_RS21240	0.20	+0.1
4,836,175	-		DDA3937_RS21240	0.20	+2.2
4,836,175	-		DDA3937_RS21240	0.20	-0.6
4,836,175	-		DDA3937_RS21240	0.20	-0.6
4,836,175	-		DDA3937_RS21240	0.20	+0.8
4,836,176	+		DDA3937_RS21240	0.20	+1.2
4,836,176	+		DDA3937_RS21240	0.20	+1.4
4,836,177	-		DDA3937_RS21240	0.20	+2.5
4,836,177	-		DDA3937_RS21240	0.20	+0.9
4,836,177	-		DDA3937_RS21240	0.20	-0.9
4,836,227	+		DDA3937_RS21240	0.24	-0.7
4,836,227	+		DDA3937_RS21240	0.24	-0.8
4,836,227	+		DDA3937_RS21240	0.24	-1.1
4,836,341	+		DDA3937_RS21240	0.32	+0.9
4,836,341	+		DDA3937_RS21240	0.32	-0.7
4,836,341	+		DDA3937_RS21240	0.32	-0.5
4,836,341	+		DDA3937_RS21240	0.32	-0.1
4,836,342	-		DDA3937_RS21240	0.32	-1.1
4,836,342	-		DDA3937_RS21240	0.32	-0.9
4,836,373	+		DDA3937_RS21240	0.34	+0.1
4,836,373	+		DDA3937_RS21240	0.34	+0.6
4,836,374	-		DDA3937_RS21240	0.34	-0.7
4,836,374	-		DDA3937_RS21240	0.34	-0.0
4,836,384	-		DDA3937_RS21240	0.35	+0.3
4,836,384	-		DDA3937_RS21240	0.35	+0.5
4,836,521	-		DDA3937_RS21240	0.44	+1.7
4,836,521	-		DDA3937_RS21240	0.44	+1.5
4,836,563	-		DDA3937_RS21240	0.47	+1.3
4,836,565	+		DDA3937_RS21240	0.48	-0.5
4,836,606	+		DDA3937_RS21240	0.50	-1.7
4,836,606	+		DDA3937_RS21240	0.50	+0.8
4,836,628	+		DDA3937_RS21240	0.52	+0.8
4,836,628	+		DDA3937_RS21240	0.52	-1.3